| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is nrdD [H]
Identifier: 34497867
GI number: 34497867
Start: 2597622
End: 2599760
Strand: Direct
Name: nrdD [H]
Synonym: CV_2412
Alternate gene names: 34497867
Gene position: 2597622-2599760 (Clockwise)
Preceding gene: 34497865
Following gene: 34497868
Centisome position: 54.67
GC content: 63.72
Gene sequence:
>2139_bases ATGCTGCAAGTGAGCAAGCGCGACGGCGCGGTAGTGGGATTCGATATCGGCAAGATTGCCAATGCCTGCCAGCGGGCGGC CATGGCGGCCGGGCATGCGGAGCCGGCCAGGCTGGCATTGGAAATCGCGTCCCAGGTGGAGCGCGAATGCCGACAGCTGG CCCGCGATGGCCGGCTGGACATTCCGGCGATCCAGAAGCGGGTGGAGGACGCGCTGATGCAGCGCTATCCGGAAGTCGCG CGGGTTTACATCGAATACCGCCATGATCGCGACAACGTCCGCGCCCGCGGCTCCGAGCTGCATGCCAAGCTGATGGGCCT GGTGCACAAGACCGACAGGGAGGCCACCACCGAAAACGCCAACAAGGACGCCAACGTTTTCCCGGTGATGCGCGACCTGA TGGCCGGCATCGTGTCCAAACAGTTCGCCGGCAATTTCCTGCCCAAGGACATCTTGAGCGCGCACAACGATGGCGACATC CATTTCCACGACCTGGATTATTCGCCGTTCCTGCCGTTCACCAACTGCTGCCTGGTGGATCTGAAAGGCATGCTGGAGCA GGGCTTCCGCCTGGGCAACGCCCAGATCGAAAGCCCCAGATCGATAGGCGTCGCTTGCGCCGTCACCGCGCAGATCATCG CCCAGGTGGCCAGCCACCAGTACGGCGGCACCACCATCCCCAATATCGACCAGACGCTGGCGCCCTATGTGCTGAAAAGC TATCGCAAGAATCTGGACGTGGCGCAGCAGTACGGCATCGCCGAGCCGGAACGCTACGCGCGCGAGCGCACGGAAAAGGA GTGCTACGACGGCATCCAGGCCTGCGAATACGAGATCAACACCCTGTTCAGCTCCAACGGCCAGCAGCCCTTCGTCACCT TTTCCTTCGGCATGGGCATGGCCTGGGAAGAGCGCATCATCCAGCAGGCCATCCTCAGGGTGCGCATCAAAGGCCTGGGC AAGGAGGGCATCACGCCGGTCTTTCCCAAGCTGGTGATGTTCATCGACAAGGGCGTCAACCTGCGGCCGGAAGATCCCAA TTACGACATCAAGCAGCTGGCGCTGGAGTGCACCTCCAAGCGCATGTATCCGGACATCATCTCCGCCGAGCTGAACCGGC GCATCACCGGCTCCGCGACGCCGGTCTCGCCGATGGGCTGCCGCAGCTTCCTGCCGGTCTGGAGGGATGAGGCGGGCAGG GAGGTGCTGGACGGCCGCAACAACCTGGGCGTGGTCAGTCTCAATCTCCCGCGCATCGCCATCGAGGCGAAAGGCGATGC GCAGGCGTTCTGGACACTGTTGGATGCGCGTCTAGGCCTGTGCTTTCGCGCCTTGATGCTGCGCATCGAGCGGCTGCGCG GCGTCAAGGCCAATGTGGCGCCGATTCTCTACACCGAGGGCGCGTTCGGCATGCGGCTGAAGCCGGACGAGGACATCATG ACGCTGTTCGAGGGCGGCCGCGCCTCGATTTCGCTGGGCTATATCGGTCTGCACGAAGTCGGCACGCTGCTGTTCGGCGC GCATCCCGCGGACAGCGAGGCCGCGAGGGACTTCCTGCGCGGCGTGGTCGCCAGGATGAGCGCGGCGACGGCGCAGTGGC GGCGCGAAACCGGGTTTGGATTCTCGCTGTATTCCACGCCCAGCGAATCGTTGTGCCACCGCTTCTGCAAGCTGGACCGC GAGCGCTTCGGCGACATCCCCGAGATGACGGACAAGGGCTATTACACCAACTCCTTCCATCTGGACGTGTTCCGCAAGGT CAACCCGTTTGAAAAGATCGACTTCGAGGCCGGCTATGCCGAGCTGGCCAGCGGCGGCCACATCACTTACGTCGAGCTGC CGAACATGAAGCACAATCTGCAGGCGCTGGAGCGCATATGGGATTACGCGCTGGAACGGGTGCCTTATTTCGGCAGCAAC ACGCCGGTGGACTCTTGCGGCGCCTGCGGATTCATGGGCGAGGCGAAGGCGGACACGGAAGGTTTCTGCTGCCCGCAGTG CGGCAACCGCGACAGCGCCTCGCTGTCGGTGACGCGCCGGGTATGCGGCTATCTGGGCAGCCCCAACTCGCGCCCGTTCA ATGCCGGCAAGCAGAAGGAAGTGATGCGCCGGGTCAAGCACTTCGGCGGAGAGCATTGA
Upstream 100 bases:
>100_bases CCCTGCCAAATCGCCTACAGTATTGGCGGTTTCAGGGCCTGCCGGGCGCAGGCGTGTTCTATACGGCCGCAAGGGCCACG AGTCGGGAGAGAACCAGGCG
Downstream 100 bases:
>100_bases GCGCGGGATGAATTACGATCGCTATTACACCTGCGATCTGGTCAACGGCGAGGGCGTGCGGGTCACGCTCTTCGTCACCG GTTGCGCCCACGCCTGCGAC
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MLQVSKRDGAVVGFDIGKIANACQRAAMAAGHAEPARLALEIASQVERECRQLARDGRLDIPAIQKRVEDALMQRYPEVA RVYIEYRHDRDNVRARGSELHAKLMGLVHKTDREATTENANKDANVFPVMRDLMAGIVSKQFAGNFLPKDILSAHNDGDI HFHDLDYSPFLPFTNCCLVDLKGMLEQGFRLGNAQIESPRSIGVACAVTAQIIAQVASHQYGGTTIPNIDQTLAPYVLKS YRKNLDVAQQYGIAEPERYARERTEKECYDGIQACEYEINTLFSSNGQQPFVTFSFGMGMAWEERIIQQAILRVRIKGLG KEGITPVFPKLVMFIDKGVNLRPEDPNYDIKQLALECTSKRMYPDIISAELNRRITGSATPVSPMGCRSFLPVWRDEAGR EVLDGRNNLGVVSLNLPRIAIEAKGDAQAFWTLLDARLGLCFRALMLRIERLRGVKANVAPILYTEGAFGMRLKPDEDIM TLFEGGRASISLGYIGLHEVGTLLFGAHPADSEAARDFLRGVVARMSAATAQWRRETGFGFSLYSTPSESLCHRFCKLDR ERFGDIPEMTDKGYYTNSFHLDVFRKVNPFEKIDFEAGYAELASGGHITYVELPNMKHNLQALERIWDYALERVPYFGSN TPVDSCGACGFMGEAKADTEGFCCPQCGNRDSASLSVTRRVCGYLGSPNSRPFNAGKQKEVMRRVKHFGGEH
Sequences:
>Translated_712_residues MLQVSKRDGAVVGFDIGKIANACQRAAMAAGHAEPARLALEIASQVERECRQLARDGRLDIPAIQKRVEDALMQRYPEVA RVYIEYRHDRDNVRARGSELHAKLMGLVHKTDREATTENANKDANVFPVMRDLMAGIVSKQFAGNFLPKDILSAHNDGDI HFHDLDYSPFLPFTNCCLVDLKGMLEQGFRLGNAQIESPRSIGVACAVTAQIIAQVASHQYGGTTIPNIDQTLAPYVLKS YRKNLDVAQQYGIAEPERYARERTEKECYDGIQACEYEINTLFSSNGQQPFVTFSFGMGMAWEERIIQQAILRVRIKGLG KEGITPVFPKLVMFIDKGVNLRPEDPNYDIKQLALECTSKRMYPDIISAELNRRITGSATPVSPMGCRSFLPVWRDEAGR EVLDGRNNLGVVSLNLPRIAIEAKGDAQAFWTLLDARLGLCFRALMLRIERLRGVKANVAPILYTEGAFGMRLKPDEDIM TLFEGGRASISLGYIGLHEVGTLLFGAHPADSEAARDFLRGVVARMSAATAQWRRETGFGFSLYSTPSESLCHRFCKLDR ERFGDIPEMTDKGYYTNSFHLDVFRKVNPFEKIDFEAGYAELASGGHITYVELPNMKHNLQALERIWDYALERVPYFGSN TPVDSCGACGFMGEAKADTEGFCCPQCGNRDSASLSVTRRVCGYLGSPNSRPFNAGKQKEVMRRVKHFGGEH >Mature_712_residues MLQVSKRDGAVVGFDIGKIANACQRAAMAAGHAEPARLALEIASQVERECRQLARDGRLDIPAIQKRVEDALMQRYPEVA RVYIEYRHDRDNVRARGSELHAKLMGLVHKTDREATTENANKDANVFPVMRDLMAGIVSKQFAGNFLPKDILSAHNDGDI HFHDLDYSPFLPFTNCCLVDLKGMLEQGFRLGNAQIESPRSIGVACAVTAQIIAQVASHQYGGTTIPNIDQTLAPYVLKS YRKNLDVAQQYGIAEPERYARERTEKECYDGIQACEYEINTLFSSNGQQPFVTFSFGMGMAWEERIIQQAILRVRIKGLG KEGITPVFPKLVMFIDKGVNLRPEDPNYDIKQLALECTSKRMYPDIISAELNRRITGSATPVSPMGCRSFLPVWRDEAGR EVLDGRNNLGVVSLNLPRIAIEAKGDAQAFWTLLDARLGLCFRALMLRIERLRGVKANVAPILYTEGAFGMRLKPDEDIM TLFEGGRASISLGYIGLHEVGTLLFGAHPADSEAARDFLRGVVARMSAATAQWRRETGFGFSLYSTPSESLCHRFCKLDR ERFGDIPEMTDKGYYTNSFHLDVFRKVNPFEKIDFEAGYAELASGGHITYVELPNMKHNLQALERIWDYALERVPYFGSN TPVDSCGACGFMGEAKADTEGFCCPQCGNRDSASLSVTRRVCGYLGSPNSRPFNAGKQKEVMRRVKHFGGEH
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=710, Percent_Identity=58.4507042253521, Blast_Score=845, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 79407; Mature: 79407
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQVSKRDGAVVGFDIGKIANACQRAAMAAGHAEPARLALEIASQVERECRQLARDGRLD CCEECCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC IPAIQKRVEDALMQRYPEVARVYIEYRHDRDNVRARGSELHAKLMGLVHKTDREATTENA CHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHCCCHHHHCCC NKDANVFPVMRDLMAGIVSKQFAGNFLPKDILSAHNDGDIHFHDLDYSPFLPFTNCCLVD CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH LKGMLEQGFRLGNAQIESPRSIGVACAVTAQIIAQVASHQYGGTTIPNIDQTLAPYVLKS HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH YRKNLDVAQQYGIAEPERYARERTEKECYDGIQACEYEINTLFSSNGQQPFVTFSFGMGM HHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC AWEERIIQQAILRVRIKGLGKEGITPVFPKLVMFIDKGVNLRPEDPNYDIKQLALECTSK HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC RMYPDIISAELNRRITGSATPVSPMGCRSFLPVWRDEAGREVLDGRNNLGVVSLNLPRIA CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCHHHHHHCCHHHHCCCCCCEEEEECCCEEE IEAKGDAQAFWTLLDARLGLCFRALMLRIERLRGVKANVAPILYTEGAFGMRLKPDEDIM EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHH TLFEGGRASISLGYIGLHEVGTLLFGAHPADSEAARDFLRGVVARMSAATAQWRRETGFG HHHCCCCCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FSLYSTPSESLCHRFCKLDRERFGDIPEMTDKGYYTNSFHLDVFRKVNPFEKIDFEAGYA EEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHCCCHHHHCCCCCHH ELASGGHITYVELPNMKHNLQALERIWDYALERVPYFGSNTPVDSCGACGFMGEAKADTE HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC GFCCPQCGNRDSASLSVTRRVCGYLGSPNSRPFNAGKQKEVMRRVKHFGGEH CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MLQVSKRDGAVVGFDIGKIANACQRAAMAAGHAEPARLALEIASQVERECRQLARDGRLD CCEECCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC IPAIQKRVEDALMQRYPEVARVYIEYRHDRDNVRARGSELHAKLMGLVHKTDREATTENA CHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHCCCHHHHCCC NKDANVFPVMRDLMAGIVSKQFAGNFLPKDILSAHNDGDIHFHDLDYSPFLPFTNCCLVD CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH LKGMLEQGFRLGNAQIESPRSIGVACAVTAQIIAQVASHQYGGTTIPNIDQTLAPYVLKS HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH YRKNLDVAQQYGIAEPERYARERTEKECYDGIQACEYEINTLFSSNGQQPFVTFSFGMGM HHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC AWEERIIQQAILRVRIKGLGKEGITPVFPKLVMFIDKGVNLRPEDPNYDIKQLALECTSK HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC RMYPDIISAELNRRITGSATPVSPMGCRSFLPVWRDEAGREVLDGRNNLGVVSLNLPRIA CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCHHHHHHCCHHHHCCCCCCEEEEECCCEEE IEAKGDAQAFWTLLDARLGLCFRALMLRIERLRGVKANVAPILYTEGAFGMRLKPDEDIM EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHH TLFEGGRASISLGYIGLHEVGTLLFGAHPADSEAARDFLRGVVARMSAATAQWRRETGFG HHHCCCCCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FSLYSTPSESLCHRFCKLDRERFGDIPEMTDKGYYTNSFHLDVFRKVNPFEKIDFEAGYA EEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHCCCHHHHCCCCCHH ELASGGHITYVELPNMKHNLQALERIWDYALERVPYFGSNTPVDSCGACGFMGEAKADTE HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC GFCCPQCGNRDSASLSVTRRVCGYLGSPNSRPFNAGKQKEVMRRVKHFGGEH CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]