| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497583
Identifier: 34497583
GI number: 34497583
Start: 2314601
End: 2316031
Strand: Reverse
Name: 34497583
Synonym: CV_2128
Alternate gene names: NA
Gene position: 2316031-2314601 (Counterclockwise)
Preceding gene: 34497584
Following gene: 34497582
Centisome position: 48.75
GC content: 67.23
Gene sequence:
>1431_bases ATGGCGGCAAACTACCTGCATGGCGTCGAAACCATTGAAGTGGAGCGCGGCCCGCGCCCGGTGCGCACCGTCAAGTCCGC GGTGATCGGCCTGATCGGCACCGCGCCGGCTGGCGCGGTCAATGTGGCCACCCTGACTTTGTCGGAGAAGGATGCGGCGG CCTTTGGCCCGCAGCTGACCGGCTTCACCATTCCGCAGGCCCTGGACGCGATTTACGACCACGGCGCCGGCACCGTCATT GTGATCAACGTGCTGGACCCGGCGCTGCACAAGAGCCCGGCCAAGGACGAGGCCGTGACCTTGGACCCGGCCACCGGCCG CGGCAGGCTGGCGCGCGGCGCCATCAGCGGGCTGACGCTGAAAAGCGCCGATGGCGGCACCGTGTATACCGAGGGCGCCG ACTACACCGTCGACGCCCTGGCCGGCGTGGTGACGCGGCTGGCAGCCGGCAGGATCGCGGTGGGCGCCACGCTCAAGGCA AGCTACGACTACGCCGATCCGGCCAAGGTGACCGCCGCCGACATCATCGGCGCCGTCAATGCGGCCGGCGTGCGCACCGG ACTGAAGGCGCTGAAGGACACCTACAATCTGTTCGGCTTCTTCGCCAAGCTGCTGATCGCGCCCGGCTTCTGCACCCAGA ACTCGGTGGCGGCCGAGCTGATCGCCATGGCGGACCAGCTGGACGCGGTGGCCTACGTCGATGCGCCCATCGGCACGACC TTCGCCCAGGCGCTGGCCGGCCGCGGCCCGGCTGGCACCATCAACTTCAACACCTCCAGCGACCGCGTCCGCCTGTGCTA CCCGCATGTGAAGGTGTATGACTCGGCAACCAACGCCGAGCGCCTGGAGCCGCTGTCCGCCCGCGCGGCCGGCCTGCGCG CCAAGGTGGACAACGACAAGGGCTTCTGGTGGTCCAGCTCCAACCAGGAGCTGGCCAGCGTCATCGGCGTGGAGCGCCAA TTGTCGGCGATGATCGACGACCCGAATTGCGAGGTGAACCTGCTCAATGAACAGGGCATCACCACCGTGTTCAGCAGCTA CGGCTCGGGCTTCCGCCTGTGGGGCAACCGCACCGCGGCCTGGCCGACCGTCAGCCACATGCGCAACTTCGAGAACGTGC GCCGCACCGGCGACGTGATCAATGAGTCGATCCGCTACTTCAGCCAGCAGTTCATCGACATGCCGCTGAACCAGGCCACC ATCGACGCGCTGGTGGAATCGGTGAACGGCTACGGTCGGAAGCTGATTGGCGACGGCGCGCTGCTGGGCTTCAAGGCCTG GTTCGACCCGGCCCGCAACCCGGCCACCGAGCTGTCCGCCGGCCATCTGCTGATCAGCTACAAGTACACAGTGCCGCCGC CGCTGGAGCGCCTGACCTTTGAGACCGAGATCACCTCGGAATACCTGCTCAGCCTGAAGGGAGGTAACTGA
Upstream 100 bases:
>100_bases CTGCTGGCGCTGCAGTACTTGGTACCGGCCCAGGAGCCGACCAAGACCAAGGCCGCGCGCGCGACTGGCGATGACGCGCC CACCGAGAAAGGAGCCTGAC
Downstream 100 bases:
>100_bases CCATGGCCGGCAAGATTGAAATCAACCGCATCACCAACGCCAACATCTACATCAACGGCAACTCGCTCTTGGGTCGCGCC GAGGAAATCAAGCTGCCGGA
Product: bacteriophage tail sheath protein
Products: NA
Alternate protein names: Phage Tail Sheath Protein; Bacteriophage Tail Sheath Protein; Phage Tail Sheath Protein FI; Phage Tail Sheath Protein; Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Phage-Related Tail Protein; Phage TAIL SHEATH PROTEIN; Phage Tail Sheath-Like Protein; Prophage; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Tail Sheath Protein Bacteriophage; Bacteriophage Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein GPFI; Phage Tail Sheath Protein FI-Like Protein; Pyocin R2_PP Tail Sheath Protein GpFI; Pyocin R2_PP Tail Sheath Protein; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein; Bacteriophage Contractile Tail Sheath Protein
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MAANYLHGVETIEVERGPRPVRTVKSAVIGLIGTAPAGAVNVATLTLSEKDAAAFGPQLTGFTIPQALDAIYDHGAGTVI VINVLDPALHKSPAKDEAVTLDPATGRGRLARGAISGLTLKSADGGTVYTEGADYTVDALAGVVTRLAAGRIAVGATLKA SYDYADPAKVTAADIIGAVNAAGVRTGLKALKDTYNLFGFFAKLLIAPGFCTQNSVAAELIAMADQLDAVAYVDAPIGTT FAQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDSATNAERLEPLSARAAGLRAKVDNDKGFWWSSSNQELASVIGVERQ LSAMIDDPNCEVNLLNEQGITTVFSSYGSGFRLWGNRTAAWPTVSHMRNFENVRRTGDVINESIRYFSQQFIDMPLNQAT IDALVESVNGYGRKLIGDGALLGFKAWFDPARNPATELSAGHLLISYKYTVPPPLERLTFETEITSEYLLSLKGGN
Sequences:
>Translated_476_residues MAANYLHGVETIEVERGPRPVRTVKSAVIGLIGTAPAGAVNVATLTLSEKDAAAFGPQLTGFTIPQALDAIYDHGAGTVI VINVLDPALHKSPAKDEAVTLDPATGRGRLARGAISGLTLKSADGGTVYTEGADYTVDALAGVVTRLAAGRIAVGATLKA SYDYADPAKVTAADIIGAVNAAGVRTGLKALKDTYNLFGFFAKLLIAPGFCTQNSVAAELIAMADQLDAVAYVDAPIGTT FAQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDSATNAERLEPLSARAAGLRAKVDNDKGFWWSSSNQELASVIGVERQ LSAMIDDPNCEVNLLNEQGITTVFSSYGSGFRLWGNRTAAWPTVSHMRNFENVRRTGDVINESIRYFSQQFIDMPLNQAT IDALVESVNGYGRKLIGDGALLGFKAWFDPARNPATELSAGHLLISYKYTVPPPLERLTFETEITSEYLLSLKGGN >Mature_475_residues AANYLHGVETIEVERGPRPVRTVKSAVIGLIGTAPAGAVNVATLTLSEKDAAAFGPQLTGFTIPQALDAIYDHGAGTVIV INVLDPALHKSPAKDEAVTLDPATGRGRLARGAISGLTLKSADGGTVYTEGADYTVDALAGVVTRLAAGRIAVGATLKAS YDYADPAKVTAADIIGAVNAAGVRTGLKALKDTYNLFGFFAKLLIAPGFCTQNSVAAELIAMADQLDAVAYVDAPIGTTF AQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDSATNAERLEPLSARAAGLRAKVDNDKGFWWSSSNQELASVIGVERQL SAMIDDPNCEVNLLNEQGITTVFSSYGSGFRLWGNRTAAWPTVSHMRNFENVRRTGDVINESIRYFSQQFIDMPLNQATI DALVESVNGYGRKLIGDGALLGFKAWFDPARNPATELSAGHLLISYKYTVPPPLERLTFETEITSEYLLSLKGGN
Specific function: Unknown
COG id: COG3497
COG function: function code R; Phage tail sheath protein FI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50492; Mature: 50360
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAANYLHGVETIEVERGPRPVRTVKSAVIGLIGTAPAGAVNVATLTLSEKDAAAFGPQLT CCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCC GFTIPQALDAIYDHGAGTVIVINVLDPALHKSPAKDEAVTLDPATGRGRLARGAISGLTL CCCHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCEE KSADGGTVYTEGADYTVDALAGVVTRLAAGRIAVGATLKASYDYADPAKVTAADIIGAVN ECCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHHHHHH AAGVRTGLKALKDTYNLFGFFAKLLIAPGFCTQNSVAAELIAMADQLDAVAYVDAPIGTT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCHHH FAQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDSATNAERLEPLSARAAGLRAKVDNDK HHHHHCCCCCCCEEEECCCCCEEEEEECCEEEEECCCCHHHHCCHHHHHCCCEEEECCCC GFWWSSSNQELASVIGVERQLSAMIDDPNCEVNLLNEQGITTVFSSYGSGFRLWGNRTAA CCEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCC WPTVSHMRNFENVRRTGDVINESIRYFSQQFIDMPLNQATIDALVESVNGYGRKLIGDGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCC LLGFKAWFDPARNPATELSAGHLLISYKYTVPPPLERLTFETEITSEYLLSLKGGN EEEHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHEEHHHHCCCCEEEECCCC >Mature Secondary Structure AANYLHGVETIEVERGPRPVRTVKSAVIGLIGTAPAGAVNVATLTLSEKDAAAFGPQLT CCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCC GFTIPQALDAIYDHGAGTVIVINVLDPALHKSPAKDEAVTLDPATGRGRLARGAISGLTL CCCHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCEE KSADGGTVYTEGADYTVDALAGVVTRLAAGRIAVGATLKASYDYADPAKVTAADIIGAVN ECCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHHHHHH AAGVRTGLKALKDTYNLFGFFAKLLIAPGFCTQNSVAAELIAMADQLDAVAYVDAPIGTT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCHHH FAQALAGRGPAGTINFNTSSDRVRLCYPHVKVYDSATNAERLEPLSARAAGLRAKVDNDK HHHHHCCCCCCCEEEECCCCCEEEEEECCEEEEECCCCHHHHCCHHHHHCCCEEEECCCC GFWWSSSNQELASVIGVERQLSAMIDDPNCEVNLLNEQGITTVFSSYGSGFRLWGNRTAA CCEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCEEEECCCCCC WPTVSHMRNFENVRRTGDVINESIRYFSQQFIDMPLNQATIDALVESVNGYGRKLIGDGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCC LLGFKAWFDPARNPATELSAGHLLISYKYTVPPPLERLTFETEITSEYLLSLKGGN EEEHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHEEHHHHCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA