| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is ybjT [C]
Identifier: 34497563
GI number: 34497563
Start: 2299131
End: 2299964
Strand: Direct
Name: ybjT [C]
Synonym: CV_2108
Alternate gene names: 34497563
Gene position: 2299131-2299964 (Clockwise)
Preceding gene: 34497562
Following gene: 34497564
Centisome position: 48.39
GC content: 68.11
Gene sequence:
>834_bases ATGAAGATATTGCTACTGGGCGGCAACGGGTTTATCGGCCGGAGGCTGGCCGCCAGGCTGATCGAGGCGGGACATGAGCT GTCGGCCCCGTCCCGCGTCGAATTGGATCTGGCGCGTCCGAATCAGGACTGGGCGGCTTGGGTGGATGGAGTGGATGCCG TCGCCAATCTGGCCGGCGCGTTCCGGCAGGGGCGAGCCGGCGGGTTCGAAGCCATTCACCATGCCGGCCCATTGCGCCTG GCTGCATTGGCGAGGGCGCATGGCGTCCGGCGTTGGGTGCAGTTGTCGGCCTTGGGCGCCGCAGCGCATGCCGGCGCGCC GTTCCTGTCCAGCAAGGGCAGAGGCGATGCCGCTCTGCTGGATTGTGGCATGGAGGCTGTCGTCGCCCGGCCCTCGTTGA TATACGGCGCGGACGGCGCCAGCAGCCGCTTGTTGTTGCGTCTGGCTCGCCTGCCATTCTGGCTGTTGCCGGAAGGCGGC GGACAACGCATCCAGCCGGTAGCGGCGGCCGACGTGGCCGAGGGGCTGCAGCGCTTGATCGAAGGCGATGCGCGCGGCGT GATCGACTTCGTCGGAGCGGCGGAAGCGTCTCTGGCCGATTATCTGCGGCAATTGAGGCGTTTGCAGGGCGTGGGTGGCG CAGCCTGGTTATGCCCTGTGCCGGCTTGGCTGGCGGCCGGATTGGCCGCCGCTTGCGGATGCTGGCCCGGCAGTCTGTTG AATCGAGACAGCTTGCGCATGCTGCGCCAGGGCTCGACAGCGGACCCGGCCGCTTTCGCCGCGCTGCTTGGCCGCCAGCC GCTGTCGTTCAGGCAATTCGGGGAGGTCGCATGA
Upstream 100 bases:
>100_bases CGCAGCTGTTGGTGCTGGTGCGGCTGGTGTGGCGCCAGGTGGCTTTCAGCCGGCCCAAGGCGGCGGGAACCGCCATCGCC GATCATGCCGGAGCGCCGCA
Downstream 100 bases:
>100_bases AAGTTTCGCGGCGAATGGTGGAGCTGTCCCTGGCCGCGCTGTGGCTGTGGAGCGGCTTGCAGCCGCCGTTGACGGTTTGG AGCGAATCGATCGCCATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; NADH-Ubiquinone Oxidoreductase
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MKILLLGGNGFIGRRLAARLIEAGHELSAPSRVELDLARPNQDWAAWVDGVDAVANLAGAFRQGRAGGFEAIHHAGPLRL AALARAHGVRRWVQLSALGAAAHAGAPFLSSKGRGDAALLDCGMEAVVARPSLIYGADGASSRLLLRLARLPFWLLPEGG GQRIQPVAAADVAEGLQRLIEGDARGVIDFVGAAEASLADYLRQLRRLQGVGGAAWLCPVPAWLAAGLAAACGCWPGSLL NRDSLRMLRQGSTADPAAFAALLGRQPLSFRQFGEVA
Sequences:
>Translated_277_residues MKILLLGGNGFIGRRLAARLIEAGHELSAPSRVELDLARPNQDWAAWVDGVDAVANLAGAFRQGRAGGFEAIHHAGPLRL AALARAHGVRRWVQLSALGAAAHAGAPFLSSKGRGDAALLDCGMEAVVARPSLIYGADGASSRLLLRLARLPFWLLPEGG GQRIQPVAAADVAEGLQRLIEGDARGVIDFVGAAEASLADYLRQLRRLQGVGGAAWLCPVPAWLAAGLAAACGCWPGSLL NRDSLRMLRQGSTADPAAFAALLGRQPLSFRQFGEVA >Mature_277_residues MKILLLGGNGFIGRRLAARLIEAGHELSAPSRVELDLARPNQDWAAWVDGVDAVANLAGAFRQGRAGGFEAIHHAGPLRL AALARAHGVRRWVQLSALGAAAHAGAPFLSSKGRGDAALLDCGMEAVVARPSLIYGADGASSRLLLRLARLPFWLLPEGG GQRIQPVAAADVAEGLQRLIEGDARGVIDFVGAAEASLADYLRQLRRLQGVGGAAWLCPVPAWLAAGLAAACGCWPGSLL NRDSLRMLRQGSTADPAAFAALLGRQPLSFRQFGEVA
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28954; Mature: 28954
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILLLGGNGFIGRRLAARLIEAGHELSAPSRVELDLARPNQDWAAWVDGVDAVANLAGA CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH FRQGRAGGFEAIHHAGPLRLAALARAHGVRRWVQLSALGAAAHAGAPFLSSKGRGDAALL HHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH DCGMEAVVARPSLIYGADGASSRLLLRLARLPFWLLPEGGGQRIQPVAAADVAEGLQRLI HHCHHHHHHCCCEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH EGDARGVIDFVGAAEASLADYLRQLRRLQGVGGAAWLCPVPAWLAAGLAAACGCWPGSLL CCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHC NRDSLRMLRQGSTADPAAFAALLGRQPLSFRQFGEVA CHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCC >Mature Secondary Structure MKILLLGGNGFIGRRLAARLIEAGHELSAPSRVELDLARPNQDWAAWVDGVDAVANLAGA CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH FRQGRAGGFEAIHHAGPLRLAALARAHGVRRWVQLSALGAAAHAGAPFLSSKGRGDAALL HHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH DCGMEAVVARPSLIYGADGASSRLLLRLARLPFWLLPEGGGQRIQPVAAADVAEGLQRLI HHCHHHHHHCCCEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH EGDARGVIDFVGAAEASLADYLRQLRRLQGVGGAAWLCPVPAWLAAGLAAACGCWPGSLL CCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHC NRDSLRMLRQGSTADPAAFAALLGRQPLSFRQFGEVA CHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA