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The map label for this gene is 34497544

Identifier: 34497544

GI number: 34497544

Start: 2275515

End: 2277203

Strand: Direct

Name: 34497544

Synonym: CV_2089

Alternate gene names: NA

Gene position: 2275515-2277203 (Clockwise)

Preceding gene: 34497543

Following gene: 34497551

Centisome position: 47.89

GC content: 67.61

Gene sequence:

>1689_bases
CTGGAAAGCCAGCTCGCCGCCTGCGCGCGCGAGGTGTTCGCGGTGGACGGCGTCGACCCGCTGCGCGCGCTCAGCGCCTT
CATGGCCAAGTACGAACGCGCCAGGGTGCGCTGCACCATCGCGCTGGACCGGGTGGCCGCCGCGCGCAGCCGGCAAAGCG
CCGACAAGGCTGCCGCCAAGACCCGCGACGCGGTCAACCTGTCGCGCTACCCGGAGTCCTTCGCCACCGCCTACGCGATG
CAGCGCCACTTCATCGCGGTGCTGGGGCCGACCAATTCCGGCAAGACCCACGCGGCGATGGAGCATCTGCAAAAGGCCAA
GAGCGGCGTCTACCTGGCGCCGCTGCGCTTGCTGGCGCTGGAAAACTACACCCGGCTGCAACAGGCCGGCGTCGCCGTCA
GCCTGATCACCGGCGAGCAGCGCAAGCTGCATCCGGACGCCACCCACGTTGCCAGCACGGTGGAAATGCTGAATCCCGAG
CGGCAGGTGGAAGTGGCGGTGATAGACGAGATTCAATTGCTGGACGACCCGGACCGCGGCGCGGCCTGGACCGCGGCCGT
GTGCGGCGTGCCGGCGCAGACGATTTATCTCGTCGGCGCGCCGGAGTCGCGCGAGGCGATCGAGTCGCTGGTGGCGCGCG
TCGGCGGCACGCTGGAAGTGCGCACGCTGGAGCGCAAGACCGCGCTGCAGATGGACAAGGCGCCGTTGCTGTCGCTGAAG
AACCTGAAGCCGGGCGATGTGCTGATCGCCTTCTCGCGGCGCGAGGTGCTGAACTGGCGCGACAAGGTGATCGAGCAGGG
GCTGAGCGTGTCGGCCATCTACGGCAACTTGTCGCCGGAAGTGCGCCAGGCGCAGGCCGAGCGCTTCGTCGCCGGCGAAA
CCCAGGTGGTGGTGGCCACCGACGCCATTGGCATGGGGCTGAACACGCCGGCGCGGCGCATCATCTTCACCACCGCCAGC
AAGTGGGACGGCTACGCCGAGGGCGTCATCGCCGCGCCGCTGGCCAAGCAGATCGCCGGCCGCGCCGGCCGCTTCGGCAA
GCACGAGACCGGCTATGTCGCCGGTTTCGACGGCCTCACCCACAAGACCATAGGCGCGCTGCTCAGGCAGAAGCCCGAGG
CGCTGCCGAACAACGGCTTTTTCGTCGCGCCCAGCCTCAAGTATCTGGAAGCGATTTCCCAGGCCACCGGCGAGATCAGG
CTCAAGCAGTTGCTTAGCCTGTTCACCAAGCATATCAATGTGCACGACGAGTTTTTCCTGCCGGCCAATCTGTCGGATCA
GATGGAAAAGGCGGAGTGGCTGGACGCGCTGCCGCTGAGCCTGGCCGACCGCTACACTTTCAGCCTGTGCCCGATTTCGA
CCAAGATCCCGATGCTGGAAAACGCGCTGCACGATTGGGCCGAGCAGCGCGCGCGCGGCAAGGCCGCTCCGCTGCTCAGG
ATGATGGGGACTGGCGGCCGCAACGAGCTGCAATACCTCGAGGACAGCTGCAAGTTGTACGCTGCCTATGCCTGGCTGGG
CTACCGAATGCCGGAAACCTTCCCCGACGGCGAAATGGCCCAGATGCTGATGCTGTCGACCTCGGAGCGCATAGACGGAC
TGCTGCAGGTGCAGAACGCCCAGAAGCGCAAGGGCAGGCGCGGGAGCGAACCGGCGCGCCGCGGGGCCGGCGGCGGGCGG
CGGCGTTGA

Upstream 100 bases:

>100_bases
CGAGGGCTTCCTCGGCAAGAGCGGCAAATGGCGCAAGCTGGATGCGGAGGCCCGGCTGGATCTGGTCAAGGAACGCTGGA
ACGAGGCCGCGCGGCAAAAG

Downstream 100 bases:

>100_bases
CGCGGATGACAAACCGGCGCGCCGCCGCGCGCATGTCGCGGCGGCCGTTCGACATGCTGGCAGCCAGTTTCTGTCGTCGC
CAGCAATGAAAAGCCCCGCC

Product: ATP-dependent RNA helicase

Products: NA

Alternate protein names: Helicase Domain Protein; Helicase; Helicase-Like; Helicase Conserved C-Terminal Domain Protein; ATP-Dependent Helicase; ATP-Dependent RNA Helicase; ATP-Dependent DNA Helicase; ATP-Dependent DNA Helicase Protein; MgpS ATP-Dependent Helicase; RNA Helicase; Superfamily II DNA/RNA Helicase; Helicase-Like Protein; Superfamily II DNA And RNA Helicase; ATP-Dependent RNA And DNA Helicase; ATP Dependent RNA Helicase; Adenosinetriphosphatase; RNA Helicase RhrA; ATP-Dependent Helicase MgpS; ATP-Dependent RNA Helicase Superfamily II; Helicase C-Terminal Domain Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; DNA Helicase; ATP-Dependent DNA And RNA Helicase Protein

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MESQLAACAREVFAVDGVDPLRALSAFMAKYERARVRCTIALDRVAAARSRQSADKAAAKTRDAVNLSRYPESFATAYAM
QRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLALENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPE
RQVEVAVIDEIQLLDDPDRGAAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLLSLK
NLKPGDVLIAFSRREVLNWRDKVIEQGLSVSAIYGNLSPEVRQAQAERFVAGETQVVVATDAIGMGLNTPARRIIFTTAS
KWDGYAEGVIAAPLAKQIAGRAGRFGKHETGYVAGFDGLTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIR
LKQLLSLFTKHINVHDEFFLPANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENALHDWAEQRARGKAAPLLR
MMGTGGRNELQYLEDSCKLYAAYAWLGYRMPETFPDGEMAQMLMLSTSERIDGLLQVQNAQKRKGRRGSEPARRGAGGGR
RR

Sequences:

>Translated_562_residues
MESQLAACAREVFAVDGVDPLRALSAFMAKYERARVRCTIALDRVAAARSRQSADKAAAKTRDAVNLSRYPESFATAYAM
QRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLALENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPE
RQVEVAVIDEIQLLDDPDRGAAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLLSLK
NLKPGDVLIAFSRREVLNWRDKVIEQGLSVSAIYGNLSPEVRQAQAERFVAGETQVVVATDAIGMGLNTPARRIIFTTAS
KWDGYAEGVIAAPLAKQIAGRAGRFGKHETGYVAGFDGLTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIR
LKQLLSLFTKHINVHDEFFLPANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENALHDWAEQRARGKAAPLLR
MMGTGGRNELQYLEDSCKLYAAYAWLGYRMPETFPDGEMAQMLMLSTSERIDGLLQVQNAQKRKGRRGSEPARRGAGGGR
RR
>Mature_562_residues
MESQLAACAREVFAVDGVDPLRALSAFMAKYERARVRCTIALDRVAAARSRQSADKAAAKTRDAVNLSRYPESFATAYAM
QRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLALENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPE
RQVEVAVIDEIQLLDDPDRGAAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLLSLK
NLKPGDVLIAFSRREVLNWRDKVIEQGLSVSAIYGNLSPEVRQAQAERFVAGETQVVVATDAIGMGLNTPARRIIFTTAS
KWDGYAEGVIAAPLAKQIAGRAGRFGKHETGYVAGFDGLTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIR
LKQLLSLFTKHINVHDEFFLPANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENALHDWAEQRARGKAAPLLR
MMGTGGRNELQYLEDSCKLYAAYAWLGYRMPETFPDGEMAQMLMLSTSERIDGLLQVQNAQKRKGRRGSEPARRGAGGGR
RR

Specific function: Unknown

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI31543667, Length=506, Percent_Identity=34.7826086956522, Blast_Score=261, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI115532784, Length=489, Percent_Identity=35.9918200408998, Blast_Score=280, Evalue=2e-75,
Organism=Caenorhabditis elegans, GI115532782, Length=489, Percent_Identity=35.9918200408998, Blast_Score=280, Evalue=2e-75,
Organism=Saccharomyces cerevisiae, GI6325228, Length=546, Percent_Identity=31.5018315018315, Blast_Score=201, Evalue=2e-52,
Organism=Drosophila melanogaster, GI221329989, Length=464, Percent_Identity=35.5603448275862, Blast_Score=263, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61637; Mature: 61637

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQLAACAREVFAVDGVDPLRALSAFMAKYERARVRCTIALDRVAAARSRQSADKAAAK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH
TRDAVNLSRYPESFATAYAMQRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLAL
HHHHHHHHHCCHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHH
ENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPERQVEVAVIDEIQLLDDPDRG
HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHEEEEEEEEEHCCCCCCCC
AAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLLSLK
CCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCCC
NLKPGDVLIAFSRREVLNWRDKVIEQGLSVSAIYGNLSPEVRQAQAERFVAGETQVVVAT
CCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
DAIGMGLNTPARRIIFTTASKWDGYAEGVIAAPLAKQIAGRAGRFGKHETGYVAGFDGLT
CCCCCCCCCCCCEEEEEECCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCH
HKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIRLKQLLSLFTKHINVHDEFFL
HHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
PANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENALHDWAEQRARGKAAPLLR
CCCCHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
MMGTGGRNELQYLEDSCKLYAAYAWLGYRMPETFPDGEMAQMLMLSTSERIDGLLQVQNA
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
QKRKGRRGSEPARRGAGGGRRR
HHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MESQLAACAREVFAVDGVDPLRALSAFMAKYERARVRCTIALDRVAAARSRQSADKAAAK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH
TRDAVNLSRYPESFATAYAMQRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLAL
HHHHHHHHHCCHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHH
ENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPERQVEVAVIDEIQLLDDPDRG
HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHEEEEEEEEEHCCCCCCCC
AAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLLSLK
CCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCCC
NLKPGDVLIAFSRREVLNWRDKVIEQGLSVSAIYGNLSPEVRQAQAERFVAGETQVVVAT
CCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
DAIGMGLNTPARRIIFTTASKWDGYAEGVIAAPLAKQIAGRAGRFGKHETGYVAGFDGLT
CCCCCCCCCCCCEEEEEECCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCH
HKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIRLKQLLSLFTKHINVHDEFFL
HHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
PANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENALHDWAEQRARGKAAPLLR
CCCCHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
MMGTGGRNELQYLEDSCKLYAAYAWLGYRMPETFPDGEMAQMLMLSTSERIDGLLQVQNA
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCH
QKRKGRRGSEPARRGAGGGRRR
HHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA