| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is dinG [H]
Identifier: 34497446
GI number: 34497446
Start: 2169184
End: 2171307
Strand: Reverse
Name: dinG [H]
Synonym: CV_1991
Alternate gene names: 34497446
Gene position: 2171307-2169184 (Counterclockwise)
Preceding gene: 34497452
Following gene: 34497445
Centisome position: 45.7
GC content: 66.2
Gene sequence:
>2124_bases ATGCTGACCGACGCCGAAAAAGACTCAATCCGCGACCATTACCGCGCCATTTCCGACCGCCTGCCGGGCTTTCGTCCGCG CGCCGCGCAACGCCGCATGCTGGCTGAAATCGCCAATGCTTTGTCGCGCGCCCAGGAGAAGGTCGGCGACGACTGGCCGG AGCGCGAAGGCGAAAGCATCGCCGTGATCGAAGGCCCCACCGGCGTCGGCAAGAGCCTGGCCTATTTGCTGGCTGGCGGC GTGATGGCGCGCTCGCGCGGCAAGAAGCTGGTGGTCACCAGCGCCACCGTGGCGCTGCAGGAACAACTGGTCAACCGCGA CCTGCCCTTCGTCGTCGAAAACAGCGGTCTGCCGCTGACCTTCGCGCTGGCCAAGGGCCGCGGCCGCTACCTGTGCCCAT ACCGCCTGTACGGCCTCACCGCCCAGCACGCGCAGCAAAGCCTGCTGCAGCCGGACCCGATGATGGCGCTGTGGGACCAC AAGCCGGAACAGGCGGAGCTGGACGCGCTGAGCGCGATGGCCGACGCCTTCCACTACCGCAAATGGAACGGCGACCGCGA CAGCTGGGACAGCGTGGTGGAAGACGGCCTGTGGGCGCGCGTCACCAACGACCGCCACGGCTGTTTGAAAACCGCCTGCC CCAACCGCGTCGAATGCCCGTTCTACCTGGCGCGCGACACGCTGGAGAACGTCGACGTGGTGGTGGCCAACCACGACCTG ATGCTGGCCGACGTCTCCATGGGCGGCGGCGTCATCCTGCCCGCCCCCGAGGAAAGCTTCTACTGCATAGACGAGGCGCA CCACCTGGCGAAAAAAGCCGTCAACCAGTTCGCCGCCGAGCATTCGCTGGGACAGGCGCTGGGCTGGCTGGACAAGGTGG GCGCGGTGGTCGTCCACGCCGAGGCGCACACCGGCAAGGCCGAGCTCGCCAGCAGCGCGATCGACTCCGCCGCCGCCTGC GTGGAAACGCTGACCGAATGGCAATGGTTGCTGGGCAGCGAAGAAGCGCTGGCCGCCAGCAGCGACAATCTGGAGCCGTC CTGGCTGATCGAGGACGGCATCCTGCCCGAGCGGCTGAAGGCCTCGGCCGCCAATATGGCCATCTCGGCCCGCGCGCTGT CAAAGCAGCTGGACGATATGGGCAACGCGCTGTCCGAGGCGCGCAAGGACAAGAGCGGCGACGTGGATCTGGACAAGACC GCCACCGAGCTGGGCTTTCTGATCGGCCGCGCCGAACAATTGATGGCGGTATGGGACCTGTTCGATACCGAAACGCCGGA AAACGCGCCGCCGATCGCCAAATGGATCACCCGCCGCGCCGAAGGCAAGGGCGACTACCTGTTCTCGGCATCGCCGGTCA GCGCCGCCGCCAGTCTGGCGGCCACGCTGTGGCGCCGCGCCGCCGGCGCCATCCTGACCTCGGCCACGCTGCGCTCGCTG GGCGATTTCGAGCTGCTGCTGTCGCAAACCGGCCTGAAATGGCTGCCCAAGGTCAGCTGCATGGCGCTGGAGTCGCCGTT CAACTTCGACGAGCAAGGCGAACTGTACTTGCCGCCGCTGCTGGCCAGCCCCAAGGATCCCGGCGGCCATACCCGCGAGA TCGTGGAGTGGCTGCCCAAGCTGATCGACCTGAAAGAGCCGGTGGGCACCCTGGTGCTGTTCTCCTCGCGCAAGCAGATG CAGGAAGTGGGCGCAGGCCTGCCCGCCGAGCTGCGCGACAGGCTGCTGATCCAGGGCGACATCCCCAAGCGCACGCTGCT GGACACCCACCATCAGCGCCTGAAGGATCAGCAGGCCAGCGTGATTTTCGGTCTGGACTCGTTTTCGGAAGGGCTGGATT TGCCCGGCGAAAGCTGCGTGCACGTGATCATCGCCAAGCTGCCCTTCGCCATGCCTGACGATCCGGTCGGCAAAACCCTG TCGCGCTGGATAGAAAAGCGCGGCGGCAATCCCTTCATCGAACTGACGGTGCCGGAGGCCTCGATCAAGCTGGTGCAGGC CGTGGGCCGCCTGATCAGAACCGAGCGCGATTACGGCCGCGTGACCATTCTGGATAACCGCTTGACGCGACAGAGTTACG GCAAAAAGCTGCTGGCCTCGCTGCCGCCATTCAAGCGCATATGA
Upstream 100 bases:
>100_bases GCTGTTCTATATTTTTTTGTTTGCCGCCTATCCTATCCACATCTTGCGCCCGCCGTCATTATGCAGGCGCACAACGGTCT CATGCGGTACAATCGCCGCC
Downstream 100 bases:
>100_bases TTTTCAGGTATGATCACGAAACTTTCGCATAAGTAAAAGTCGTCGGCCTAGAAAAAACGTCTTAGCACGGACAACAAAAC AGGCTACACCAAAAGCAAAC
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MLTDAEKDSIRDHYRAISDRLPGFRPRAAQRRMLAEIANALSRAQEKVGDDWPEREGESIAVIEGPTGVGKSLAYLLAGG VMARSRGKKLVVTSATVALQEQLVNRDLPFVVENSGLPLTFALAKGRGRYLCPYRLYGLTAQHAQQSLLQPDPMMALWDH KPEQAELDALSAMADAFHYRKWNGDRDSWDSVVEDGLWARVTNDRHGCLKTACPNRVECPFYLARDTLENVDVVVANHDL MLADVSMGGGVILPAPEESFYCIDEAHHLAKKAVNQFAAEHSLGQALGWLDKVGAVVVHAEAHTGKAELASSAIDSAAAC VETLTEWQWLLGSEEALAASSDNLEPSWLIEDGILPERLKASAANMAISARALSKQLDDMGNALSEARKDKSGDVDLDKT ATELGFLIGRAEQLMAVWDLFDTETPENAPPIAKWITRRAEGKGDYLFSASPVSAAASLAATLWRRAAGAILTSATLRSL GDFELLLSQTGLKWLPKVSCMALESPFNFDEQGELYLPPLLASPKDPGGHTREIVEWLPKLIDLKEPVGTLVLFSSRKQM QEVGAGLPAELRDRLLIQGDIPKRTLLDTHHQRLKDQQASVIFGLDSFSEGLDLPGESCVHVIIAKLPFAMPDDPVGKTL SRWIEKRGGNPFIELTVPEASIKLVQAVGRLIRTERDYGRVTILDNRLTRQSYGKKLLASLPPFKRI
Sequences:
>Translated_707_residues MLTDAEKDSIRDHYRAISDRLPGFRPRAAQRRMLAEIANALSRAQEKVGDDWPEREGESIAVIEGPTGVGKSLAYLLAGG VMARSRGKKLVVTSATVALQEQLVNRDLPFVVENSGLPLTFALAKGRGRYLCPYRLYGLTAQHAQQSLLQPDPMMALWDH KPEQAELDALSAMADAFHYRKWNGDRDSWDSVVEDGLWARVTNDRHGCLKTACPNRVECPFYLARDTLENVDVVVANHDL MLADVSMGGGVILPAPEESFYCIDEAHHLAKKAVNQFAAEHSLGQALGWLDKVGAVVVHAEAHTGKAELASSAIDSAAAC VETLTEWQWLLGSEEALAASSDNLEPSWLIEDGILPERLKASAANMAISARALSKQLDDMGNALSEARKDKSGDVDLDKT ATELGFLIGRAEQLMAVWDLFDTETPENAPPIAKWITRRAEGKGDYLFSASPVSAAASLAATLWRRAAGAILTSATLRSL GDFELLLSQTGLKWLPKVSCMALESPFNFDEQGELYLPPLLASPKDPGGHTREIVEWLPKLIDLKEPVGTLVLFSSRKQM QEVGAGLPAELRDRLLIQGDIPKRTLLDTHHQRLKDQQASVIFGLDSFSEGLDLPGESCVHVIIAKLPFAMPDDPVGKTL SRWIEKRGGNPFIELTVPEASIKLVQAVGRLIRTERDYGRVTILDNRLTRQSYGKKLLASLPPFKRI >Mature_707_residues MLTDAEKDSIRDHYRAISDRLPGFRPRAAQRRMLAEIANALSRAQEKVGDDWPEREGESIAVIEGPTGVGKSLAYLLAGG VMARSRGKKLVVTSATVALQEQLVNRDLPFVVENSGLPLTFALAKGRGRYLCPYRLYGLTAQHAQQSLLQPDPMMALWDH KPEQAELDALSAMADAFHYRKWNGDRDSWDSVVEDGLWARVTNDRHGCLKTACPNRVECPFYLARDTLENVDVVVANHDL MLADVSMGGGVILPAPEESFYCIDEAHHLAKKAVNQFAAEHSLGQALGWLDKVGAVVVHAEAHTGKAELASSAIDSAAAC VETLTEWQWLLGSEEALAASSDNLEPSWLIEDGILPERLKASAANMAISARALSKQLDDMGNALSEARKDKSGDVDLDKT ATELGFLIGRAEQLMAVWDLFDTETPENAPPIAKWITRRAEGKGDYLFSASPVSAAASLAATLWRRAAGAILTSATLRSL GDFELLLSQTGLKWLPKVSCMALESPFNFDEQGELYLPPLLASPKDPGGHTREIVEWLPKLIDLKEPVGTLVLFSSRKQM QEVGAGLPAELRDRLLIQGDIPKRTLLDTHHQRLKDQQASVIFGLDSFSEGLDLPGESCVHVIIAKLPFAMPDDPVGKTL SRWIEKRGGNPFIELTVPEASIKLVQAVGRLIRTERDYGRVTILDNRLTRQSYGKKLLASLPPFKRI
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=723, Percent_Identity=34.9930843706777, Blast_Score=338, Evalue=1e-93, Organism=Escherichia coli, GI1788110, Length=701, Percent_Identity=30.2425106990014, Blast_Score=209, Evalue=3e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77549; Mature: 77549
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDAEKDSIRDHYRAISDRLPGFRPRAAQRRMLAEIANALSRAQEKVGDDWPEREGESI CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE AVIEGPTGVGKSLAYLLAGGVMARSRGKKLVVTSATVALQEQLVNRDLPFVVENSGLPLT EEEECCCCCHHHHHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEECCCCCCEE FALAKGRGRYLCPYRLYGLTAQHAQQSLLQPDPMMALWDHKPEQAELDALSAMADAFHYR EEEECCCCCEECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH KWNGDRDSWDSVVEDGLWARVTNDRHGCLKTACPNRVECPFYLARDTLENVDVVVANHDL CCCCCCHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCE MLADVSMGGGVILPAPEESFYCIDEAHHLAKKAVNQFAAEHSLGQALGWLDKVGAVVVHA EEEEECCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE EAHTGKAELASSAIDSAAACVETLTEWQWLLGSEEALAASSDNLEPSWLIEDGILPERLK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCCHHHHH ASAANMAISARALSKQLDDMGNALSEARKDKSGDVDLDKTATELGFLIGRAEQLMAVWDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FDTETPENAPPIAKWITRRAEGKGDYLFSASPVSAAASLAATLWRRAAGAILTSATLRSL HCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDFELLLSQTGLKWLPKVSCMALESPFNFDEQGELYLPPLLASPKDPGGHTREIVEWLPK CHHHHHHHHCCCHHCCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH LIDLKEPVGTLVLFSSRKQMQEVGAGLPAELRDRLLIQGDIPKRTLLDTHHQRLKDQQAS HHCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCE VIFGLDSFSEGLDLPGESCVHVIIAKLPFAMPDDPVGKTLSRWIEKRGGNPFIELTVPEA EEEECHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHH SIKLVQAVGRLIRTERDYGRVTILDNRLTRQSYGKKLLASLPPFKRI HHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLTDAEKDSIRDHYRAISDRLPGFRPRAAQRRMLAEIANALSRAQEKVGDDWPEREGESI CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE AVIEGPTGVGKSLAYLLAGGVMARSRGKKLVVTSATVALQEQLVNRDLPFVVENSGLPLT EEEECCCCCHHHHHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEECCCCCCEE FALAKGRGRYLCPYRLYGLTAQHAQQSLLQPDPMMALWDHKPEQAELDALSAMADAFHYR EEEECCCCCEECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH KWNGDRDSWDSVVEDGLWARVTNDRHGCLKTACPNRVECPFYLARDTLENVDVVVANHDL CCCCCCHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCE MLADVSMGGGVILPAPEESFYCIDEAHHLAKKAVNQFAAEHSLGQALGWLDKVGAVVVHA EEEEECCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE EAHTGKAELASSAIDSAAACVETLTEWQWLLGSEEALAASSDNLEPSWLIEDGILPERLK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEECCCCCHHHHH ASAANMAISARALSKQLDDMGNALSEARKDKSGDVDLDKTATELGFLIGRAEQLMAVWDL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FDTETPENAPPIAKWITRRAEGKGDYLFSASPVSAAASLAATLWRRAAGAILTSATLRSL HCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDFELLLSQTGLKWLPKVSCMALESPFNFDEQGELYLPPLLASPKDPGGHTREIVEWLPK CHHHHHHHHCCCHHCCCCHHEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH LIDLKEPVGTLVLFSSRKQMQEVGAGLPAELRDRLLIQGDIPKRTLLDTHHQRLKDQQAS HHCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCE VIFGLDSFSEGLDLPGESCVHVIIAKLPFAMPDDPVGKTLSRWIEKRGGNPFIELTVPEA EEEECHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHH SIKLVQAVGRLIRTERDYGRVTILDNRLTRQSYGKKLLASLPPFKRI HHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]