| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is btuB [H]
Identifier: 34497437
GI number: 34497437
Start: 2159092
End: 2161698
Strand: Direct
Name: btuB [H]
Synonym: CV_1982
Alternate gene names: 34497437
Gene position: 2159092-2161698 (Clockwise)
Preceding gene: 34497436
Following gene: 34497438
Centisome position: 45.44
GC content: 57.69
Gene sequence:
>2607_bases ATGAGAAAGAAACAGCTGGTCGTGGCCTTGGCCATGGCGGGCATAGGCGTCAACGCGCCTATGGCATGGGCCGCGGATGA GGCGGCGTCGGGAGAGTTGGATCGGGTGGAGGTGACCGGCTCCAATATCAAGCGCAGCATCAAGCAGGAAAAGGCGCTGC CGGTGACGATAGTCCGCACCGAGGACATGACCAAGCAAGGCTTCACCACGGTCGAGCAGGTGGTCAACTCATTGGCCAGC AACCAGTCCAATCTGGTTGGCGCGTCTTCCGTGCAATCCGTCAGCGGCGGCGCGTCATATGCCGGCTTGAGAGGTTTTGA TCCGCAATACACCTTGGTGCTGCTGGATGGCCGCCGAGTCGCCAACCAGGCGATTTCCGGCGTCGCAACGGATTTGAACG CCATCCCGCTGTCGGCAATAGACCGGATCGAGGTGTTGCGAGACGGCGCGTCGGCCTTGTACGGCAGTGACGCCATCGGC GGCGTGATGAACTTCATCACCAAGAAAAGCTACCAAGGGTTGACGATTTCCGGCGAGGCGCAGGCGACACAGCACAAAGG CGGCGATTCGGCCAATGTCAGCTTGCTGGGCGGTGTGGGCGATCTTGCGAAGGATGGCTGGAATGCGTACGGCGTACTGT CTTATCAAAAAAACAAGGCGATCAAGACCATAGATCGCGATTTCGCCACCAAGAACCAATCGTTGAGCAGCATCACCTAT CCGGCCAACTTCCTCTATCAGGCAGCGGGCAAGCCCGGGGATGGCAATGTCTACAACGCCGCCATGCCGGGCTGCCGGCC GCCTTACACCACGCCCAGGGATGCAACCAGCTGCGGCGAAAAGACCTGGCTGTTCATGGACCTGACGCCGGAAGTGGAGC AGTTCACCGCCAACGGTAAGCTTAGCAAGCAGTTTGGCGACCATATGCTGACAGCGCAGTATTTGGGCGCCCGCAATATC AGCACCACCCGCATCGGTCCGACGCCGATGCAGTCCATTGCCACGCTGACGGCAGGCGTCAACAAGTACTTCCCTACCGT GCTGCCGGATGGCTCGCCGGTGACGCCGGGCGCCAAGGCGGTGCTGAACCTGCGCAGTGATCCCCTGGGGCCAAGAACCA CCAAGAGCACATCGGATACCCACCGCTTGGCCGTCAATCTGGAAGGCCTGCTCGGTGGCTGGGATTATCGTACCGGCGCC GCTTATTCGTCGAACCAGACCACCATCAATTACAAGAGCGGCTATGTGAATGGCGACAAGATCGAGCAGGCGTTGCTGAA CGACCAGATCAATCCTTTCGGTGATTCGCCCGCCGGCGCGTGGGAGAACGTGGAGTTGAAGGGGGATGGCTGGATATCCA AGTACGAGACGGCATTGGCGGATTTCAAGGCGAGCAAGGAGCTGTTCGCCCTGCCGGCGGGCAATTTGGCGGCGGCATTC GGTGGCGAGCTGCGCCATGAGAAGCTGGACAGCCAGATTCAGGATCTGGCCCAGTACGCGGTGGGGTCCGGCATTGCGGA CTCCAAGTCGACCAAGGGTAGCCGCAATATTTCGGCATTGTACCTTGAGGCCGATGTGCCTGTAATCAAGGGGTTGGACA TACAGCTGGCCGCGCGCTACGACAAGTACAGCGATTTCGGCAAGGCTTTCAATCCCAAGGTGGCATTCAAGTATCAGCCC GCCCCGCAAATTCTGTTCCGTGGTTCCGCCAGCCGGGGATTCCGCGCGCCATCGCTGTTCGATGTCTTCCAGCCGGATGC GAAAACCTATACCAACGGCAACAATCTGAATGACCCGGTTCTTTGTCCAAACGGAACACCCGCCAACGGCGGTGACAAGA CCGATTGCGGCACCACCTTCTTCGCCAAGCAGGGCGGTAATCGCAATCTGGAGCCGGAGCGCGCCAGCTCGCTCACTTTC GGTGTTGTCATCGAGCCGATCAGGGAGATCACAGCCAGCGTCGACTTCTGGTGGACCACCATCAATAAAGTGATAGGCGT ATTGGACAACGACTTGATCTTCAACGATCCGGTCAAGTATGCAAACCGCTTTGTCCGGGTGAATCCGAATGACCCGTATT CCAAGCTTGACTACGTTTCCACTCCGACCGAGAACTTGGGCAATCTGAGCGCGGCGGGTTTGGATACCTCGTTCTCCTGG CGGCTGCCCAGAAGCCGCCTTGGCAATTTCACCATCAATCTGGACGGAACCTATACCTCCAAGTTCGTCCAGCAGGTGGA GGCGGGAGGGATCTATTACTCACGTTTGAGCCAATGGAACAATGGCTTGCAACCAGTAGTTCGCTGGAAACATTCGCTGG GCCTCAACTGGTCTCTGGGAAATTGGAGCGCATTGTTGGCCCAGAACTATGTTTCCGGTTACACCGACTACAAGGCAACG CATAGCGTCAAGCCGTATTCCAACTGGAACCTGTCATCTACCTATCTATGGCAGAAGAAGTTGAGCGTGACGGCGGGGGT GAAGAATCTGTTTGACCAGGAGCCGCCTTTCAGCAATCAGAACAAATTCTTCCAGAAAGGATTTGATCCGATTCTGGCCG ATCCTGTCGGTCGAGCCTTTTTCTTGAAAGCGTCATACAAACTCTAG
Upstream 100 bases:
>100_bases TTCAGAGTCATGCCCATGGGATGGTCGTGGCTCGAATGCCGTCACGCCAGCCGTAGAACTGGCGGATGGAATACGGATAA GAGCAAAGGAGAGTTCCGTG
Downstream 100 bases:
>100_bases TTTTGGCTATTGTATTTAGTCCACAGCTATAGCATTCTGTCATGACGGCGCATGTCCTTATGCGTTGAGAATGCGGCGCG GGAGGCGATCCCGCCCCGCC
Product: tonB dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MRKKQLVVALAMAGIGVNAPMAWAADEAASGELDRVEVTGSNIKRSIKQEKALPVTIVRTEDMTKQGFTTVEQVVNSLAS NQSNLVGASSVQSVSGGASYAGLRGFDPQYTLVLLDGRRVANQAISGVATDLNAIPLSAIDRIEVLRDGASALYGSDAIG GVMNFITKKSYQGLTISGEAQATQHKGGDSANVSLLGGVGDLAKDGWNAYGVLSYQKNKAIKTIDRDFATKNQSLSSITY PANFLYQAAGKPGDGNVYNAAMPGCRPPYTTPRDATSCGEKTWLFMDLTPEVEQFTANGKLSKQFGDHMLTAQYLGARNI STTRIGPTPMQSIATLTAGVNKYFPTVLPDGSPVTPGAKAVLNLRSDPLGPRTTKSTSDTHRLAVNLEGLLGGWDYRTGA AYSSNQTTINYKSGYVNGDKIEQALLNDQINPFGDSPAGAWENVELKGDGWISKYETALADFKASKELFALPAGNLAAAF GGELRHEKLDSQIQDLAQYAVGSGIADSKSTKGSRNISALYLEADVPVIKGLDIQLAARYDKYSDFGKAFNPKVAFKYQP APQILFRGSASRGFRAPSLFDVFQPDAKTYTNGNNLNDPVLCPNGTPANGGDKTDCGTTFFAKQGGNRNLEPERASSLTF GVVIEPIREITASVDFWWTTINKVIGVLDNDLIFNDPVKYANRFVRVNPNDPYSKLDYVSTPTENLGNLSAAGLDTSFSW RLPRSRLGNFTINLDGTYTSKFVQQVEAGGIYYSRLSQWNNGLQPVVRWKHSLGLNWSLGNWSALLAQNYVSGYTDYKAT HSVKPYSNWNLSSTYLWQKKLSVTAGVKNLFDQEPPFSNQNKFFQKGFDPILADPVGRAFFLKASYKL
Sequences:
>Translated_868_residues MRKKQLVVALAMAGIGVNAPMAWAADEAASGELDRVEVTGSNIKRSIKQEKALPVTIVRTEDMTKQGFTTVEQVVNSLAS NQSNLVGASSVQSVSGGASYAGLRGFDPQYTLVLLDGRRVANQAISGVATDLNAIPLSAIDRIEVLRDGASALYGSDAIG GVMNFITKKSYQGLTISGEAQATQHKGGDSANVSLLGGVGDLAKDGWNAYGVLSYQKNKAIKTIDRDFATKNQSLSSITY PANFLYQAAGKPGDGNVYNAAMPGCRPPYTTPRDATSCGEKTWLFMDLTPEVEQFTANGKLSKQFGDHMLTAQYLGARNI STTRIGPTPMQSIATLTAGVNKYFPTVLPDGSPVTPGAKAVLNLRSDPLGPRTTKSTSDTHRLAVNLEGLLGGWDYRTGA AYSSNQTTINYKSGYVNGDKIEQALLNDQINPFGDSPAGAWENVELKGDGWISKYETALADFKASKELFALPAGNLAAAF GGELRHEKLDSQIQDLAQYAVGSGIADSKSTKGSRNISALYLEADVPVIKGLDIQLAARYDKYSDFGKAFNPKVAFKYQP APQILFRGSASRGFRAPSLFDVFQPDAKTYTNGNNLNDPVLCPNGTPANGGDKTDCGTTFFAKQGGNRNLEPERASSLTF GVVIEPIREITASVDFWWTTINKVIGVLDNDLIFNDPVKYANRFVRVNPNDPYSKLDYVSTPTENLGNLSAAGLDTSFSW RLPRSRLGNFTINLDGTYTSKFVQQVEAGGIYYSRLSQWNNGLQPVVRWKHSLGLNWSLGNWSALLAQNYVSGYTDYKAT HSVKPYSNWNLSSTYLWQKKLSVTAGVKNLFDQEPPFSNQNKFFQKGFDPILADPVGRAFFLKASYKL >Mature_868_residues MRKKQLVVALAMAGIGVNAPMAWAADEAASGELDRVEVTGSNIKRSIKQEKALPVTIVRTEDMTKQGFTTVEQVVNSLAS NQSNLVGASSVQSVSGGASYAGLRGFDPQYTLVLLDGRRVANQAISGVATDLNAIPLSAIDRIEVLRDGASALYGSDAIG GVMNFITKKSYQGLTISGEAQATQHKGGDSANVSLLGGVGDLAKDGWNAYGVLSYQKNKAIKTIDRDFATKNQSLSSITY PANFLYQAAGKPGDGNVYNAAMPGCRPPYTTPRDATSCGEKTWLFMDLTPEVEQFTANGKLSKQFGDHMLTAQYLGARNI STTRIGPTPMQSIATLTAGVNKYFPTVLPDGSPVTPGAKAVLNLRSDPLGPRTTKSTSDTHRLAVNLEGLLGGWDYRTGA AYSSNQTTINYKSGYVNGDKIEQALLNDQINPFGDSPAGAWENVELKGDGWISKYETALADFKASKELFALPAGNLAAAF GGELRHEKLDSQIQDLAQYAVGSGIADSKSTKGSRNISALYLEADVPVIKGLDIQLAARYDKYSDFGKAFNPKVAFKYQP APQILFRGSASRGFRAPSLFDVFQPDAKTYTNGNNLNDPVLCPNGTPANGGDKTDCGTTFFAKQGGNRNLEPERASSLTF GVVIEPIREITASVDFWWTTINKVIGVLDNDLIFNDPVKYANRFVRVNPNDPYSKLDYVSTPTENLGNLSAAGLDTSFSW RLPRSRLGNFTINLDGTYTSKFVQQVEAGGIYYSRLSQWNNGLQPVVRWKHSLGLNWSLGNWSALLAQNYVSGYTDYKAT HSVKPYSNWNLSSTYLWQKKLSVTAGVKNLFDQEPPFSNQNKFFQKGFDPILADPVGRAFFLKASYKL
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=192, Percent_Identity=31.7708333333333, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1790405, Length=236, Percent_Identity=30.9322033898305, Blast_Score=81, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94017; Mature: 94017
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKKQLVVALAMAGIGVNAPMAWAADEAASGELDRVEVTGSNIKRSIKQEKALPVTIVRT CCCHHEEEEEEHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEC EDMTKQGFTTVEQVVNSLASNQSNLVGASSVQSVSGGASYAGLRGFDPQYTLVLLDGRRV CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHH ANQAISGVATDLNAIPLSAIDRIEVLRDGASALYGSDAIGGVMNFITKKSYQGLTISGEA HHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCEEECCCC QATQHKGGDSANVSLLGGVGDLAKDGWNAYGVLSYQKNKAIKTIDRDFATKNQSLSSITY CHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEC PANFLYQAAGKPGDGNVYNAAMPGCRPPYTTPRDATSCGEKTWLFMDLTPEVEQFTANGK CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC LSKQFGDHMLTAQYLGARNISTTRIGPTPMQSIATLTAGVNKYFPTVLPDGSPVTPGAKA HHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH VLNLRSDPLGPRTTKSTSDTHRLAVNLEGLLGGWDYRTGAAYSSNQTTINYKSGYVNGDK HEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEECCCCCEEEECCCCCCHHH IEQALLNDQINPFGDSPAGAWENVELKGDGWISKYETALADFKASKELFALPAGNLAAAF HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHH GGELRHEKLDSQIQDLAQYAVGSGIADSKSTKGSRNISALYLEADVPVIKGLDIQLAARY CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCEEEEECC DKYSDFGKAFNPKVAFKYQPAPQILFRGSASRGFRAPSLFDVFQPDAKTYTNGNNLNDPV CHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCE LCPNGTPANGGDKTDCGTTFFAKQGGNRNLEPERASSLTFGVVIEPIREITASVDFWWTT ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCEEEHHHHHHHHHHHCCHHHHHHH INKVIGVLDNDLIFNDPVKYANRFVRVNPNDPYSKLDYVSTPTENLGNLSAAGLDTSFSW HHHHHHHHCCCCEECCCHHHCCCEEEECCCCCHHHCCCCCCCCHHHCCCEECCCCCCCEE RLPRSRLGNFTINLDGTYTSKFVQQVEAGGIYYSRLSQWNNGLQPVVRWKHSLGLNWSLG CCCHHHCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCEECCC NWSALLAQNYVSGYTDYKATHSVKPYSNWNLSSTYLWQKKLSVTAGVKNLFDQEPPFSNQ CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCC NKFFQKGFDPILADPVGRAFFLKASYKL CHHHHHCCCCHHCCCCCCEEEEEEECCC >Mature Secondary Structure MRKKQLVVALAMAGIGVNAPMAWAADEAASGELDRVEVTGSNIKRSIKQEKALPVTIVRT CCCHHEEEEEEHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEC EDMTKQGFTTVEQVVNSLASNQSNLVGASSVQSVSGGASYAGLRGFDPQYTLVLLDGRRV CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHH ANQAISGVATDLNAIPLSAIDRIEVLRDGASALYGSDAIGGVMNFITKKSYQGLTISGEA HHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCEEECCCC QATQHKGGDSANVSLLGGVGDLAKDGWNAYGVLSYQKNKAIKTIDRDFATKNQSLSSITY CHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEC PANFLYQAAGKPGDGNVYNAAMPGCRPPYTTPRDATSCGEKTWLFMDLTPEVEQFTANGK CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC LSKQFGDHMLTAQYLGARNISTTRIGPTPMQSIATLTAGVNKYFPTVLPDGSPVTPGAKA HHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH VLNLRSDPLGPRTTKSTSDTHRLAVNLEGLLGGWDYRTGAAYSSNQTTINYKSGYVNGDK HEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEECCCCCEEEECCCCCCHHH IEQALLNDQINPFGDSPAGAWENVELKGDGWISKYETALADFKASKELFALPAGNLAAAF HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHH GGELRHEKLDSQIQDLAQYAVGSGIADSKSTKGSRNISALYLEADVPVIKGLDIQLAARY CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEEECCCEEEEECC DKYSDFGKAFNPKVAFKYQPAPQILFRGSASRGFRAPSLFDVFQPDAKTYTNGNNLNDPV CHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCE LCPNGTPANGGDKTDCGTTFFAKQGGNRNLEPERASSLTFGVVIEPIREITASVDFWWTT ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCEEEHHHHHHHHHHHCCHHHHHHH INKVIGVLDNDLIFNDPVKYANRFVRVNPNDPYSKLDYVSTPTENLGNLSAAGLDTSFSW HHHHHHHHCCCCEECCCHHHCCCEEEECCCCCHHHCCCCCCCCHHHCCCEECCCCCCCEE RLPRSRLGNFTINLDGTYTSKFVQQVEAGGIYYSRLSQWNNGLQPVVRWKHSLGLNWSLG CCCHHHCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCEECCC NWSALLAQNYVSGYTDYKATHSVKPYSNWNLSSTYLWQKKLSVTAGVKNLFDQEPPFSNQ CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCC NKFFQKGFDPILADPVGRAFFLKASYKL CHHHHHCCCCHHCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA