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The map label for this gene is yjiR [H]

Identifier: 34497355

GI number: 34497355

Start: 2065597

End: 2067078

Strand: Reverse

Name: yjiR [H]

Synonym: CV_1900

Alternate gene names: 34497355

Gene position: 2067078-2065597 (Counterclockwise)

Preceding gene: 34497366

Following gene: 34497354

Centisome position: 43.51

GC content: 70.31

Gene sequence:

>1482_bases
ATGATGAACGCTGTGCCCCTCCCCGCCGAAAGCCCGACGATGCAGAACAGCGCCGCCACCCTCTATCAGCAGCTCGCCGA
CGACCTGTCGCTGGCGATCAGCCGCGGCACGCTGCCGCCCGGCTCGCGGCTGCCGTCGGTGCGCCGTGCCGCCCACAGCC
GCCAGCTCAGCCTCAACACCGTGGTCAGCGCCTACCGCGTGCTGGAAGACCGCGGCCTGATCGAGGCGCGGCCGCAGTCG
GGCTACTACGTGCGCGCGCGGCTGCCGTCCCCGGCGCGGCAGGCCGGCACCGAGAGCGGCCCCGCCTCGCCGACCAAGCA
CGCGGTGCTGGACCTGATCGGCACCGTGCTGCAGGCGCAGCAGTCCGAGGGCTTCATCGACCTGGCGCTGGCCTGCCCGC
GCGGCGGCGACTTCTATCCCGGCAACAAGCTGGCCAGGCTGATGGGCCAGATCCTGCGCCGCCAGCCGGGCATGGTCAGC
ACCTACGCGCTGCCGCCGGGCCCGGAACGCTTGCGCACCCAGATCGCCCGCCGCGGCATGGACCTGGGCATGACGCTGCA
GCCGGACAACATCATCCTCACCCACGGCTGCATGGAGGCGCTGCAGCTGGCGCTGCGCGCCGTCACCCGCCACGGCGACG
CGGTGGGGCTGGAATCGCCGACTTATTTCAACCTGCTGCCGCTGCTGGCCAGCCTGGGGCTGAAGGCGGTGGAGATTCCC
ACCGATCCGCAGACGGGCCTGTCGATAGACGCGGTGGAAGTGCTGCTGGAGGAAAAACGCATCCAGGCGCTGGTGGCCAT
GCCCAACGTGCACAATCCGCTGGGCTGCTGCATGCCGCTGGAGAACAAGAAGCGGCTGGCGAAGCTGGTCAACCGGCACC
AGGTGCCGCTGATCGAGGACGCTCTGTACGCCGAACTGCAGTTTTCCGACACCCTGGCGCCGGCGGTGAAGGCATTCGAC
GCCGACGGCTGGGTCATCGTCTGCGCCAGCTATACCAAGACGCTGGCGCCGGATTTCCGCATCGGCTGGATGGAAGGCGG
CCGCTTCGGCGCGGCGCTGCGCAAGCTGAAATTCGCCTCCTCCGTCGCGCAGCCGGCGGTGCTGGCGGAAACGCTGGGCG
CGTTTCTGGAATCGGGCGGCTACGACCACCACCTGCGCACGCTGAAGCGCCGCTACGCCGCGCACGTGGAGAAGGTGCGC
GGGCTGATCGCCCGCCATTTCCCGGCCGGCACCCGCGCCACCCAGCCCCAGGGCGGCTTCCTGATCTGGCTGGAACTGCC
GGAGGGCTGCGACAGCGTGGCGCTGTTCCACGCCGCGATGGCGGAGAAGATCAGCCTGATTCCCGGCCCGCTCAGCTCGC
CCGGCGGCCGCTACCGCAACGCGATGCGCCTGTCCTGCTGCTACCCGCTGGACGAACGCTACCTGGCGGCCCTGGTGCGC
GTCGGCCAGCTCGCCTGCGAACAGTTGGCGCCGAATGGCTGA

Upstream 100 bases:

>100_bases
CCCGGACATGCTAAGCGGACTGTCTTGATGGATACAGATTCAAAAATCCATTATTGATCTGGTTACAGATTAATCTTTTC
AGCAACTGTCACCCTCCACT

Downstream 100 bases:

>100_bases
ACGTTTTTCCCCTGCCCGCGAACAAAACCGTGACCGCTCCGCCCGCTTGACGGTACAATACCGGCTTGCCTCTGGATTTC
AACCGTCCGGCCACCGCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MMNAVPLPAESPTMQNSAATLYQQLADDLSLAISRGTLPPGSRLPSVRRAAHSRQLSLNTVVSAYRVLEDRGLIEARPQS
GYYVRARLPSPARQAGTESGPASPTKHAVLDLIGTVLQAQQSEGFIDLALACPRGGDFYPGNKLARLMGQILRRQPGMVS
TYALPPGPERLRTQIARRGMDLGMTLQPDNIILTHGCMEALQLALRAVTRHGDAVGLESPTYFNLLPLLASLGLKAVEIP
TDPQTGLSIDAVEVLLEEKRIQALVAMPNVHNPLGCCMPLENKKRLAKLVNRHQVPLIEDALYAELQFSDTLAPAVKAFD
ADGWVIVCASYTKTLAPDFRIGWMEGGRFGAALRKLKFASSVAQPAVLAETLGAFLESGGYDHHLRTLKRRYAAHVEKVR
GLIARHFPAGTRATQPQGGFLIWLELPEGCDSVALFHAAMAEKISLIPGPLSSPGGRYRNAMRLSCCYPLDERYLAALVR
VGQLACEQLAPNG

Sequences:

>Translated_493_residues
MMNAVPLPAESPTMQNSAATLYQQLADDLSLAISRGTLPPGSRLPSVRRAAHSRQLSLNTVVSAYRVLEDRGLIEARPQS
GYYVRARLPSPARQAGTESGPASPTKHAVLDLIGTVLQAQQSEGFIDLALACPRGGDFYPGNKLARLMGQILRRQPGMVS
TYALPPGPERLRTQIARRGMDLGMTLQPDNIILTHGCMEALQLALRAVTRHGDAVGLESPTYFNLLPLLASLGLKAVEIP
TDPQTGLSIDAVEVLLEEKRIQALVAMPNVHNPLGCCMPLENKKRLAKLVNRHQVPLIEDALYAELQFSDTLAPAVKAFD
ADGWVIVCASYTKTLAPDFRIGWMEGGRFGAALRKLKFASSVAQPAVLAETLGAFLESGGYDHHLRTLKRRYAAHVEKVR
GLIARHFPAGTRATQPQGGFLIWLELPEGCDSVALFHAAMAEKISLIPGPLSSPGGRYRNAMRLSCCYPLDERYLAALVR
VGQLACEQLAPNG
>Mature_493_residues
MMNAVPLPAESPTMQNSAATLYQQLADDLSLAISRGTLPPGSRLPSVRRAAHSRQLSLNTVVSAYRVLEDRGLIEARPQS
GYYVRARLPSPARQAGTESGPASPTKHAVLDLIGTVLQAQQSEGFIDLALACPRGGDFYPGNKLARLMGQILRRQPGMVS
TYALPPGPERLRTQIARRGMDLGMTLQPDNIILTHGCMEALQLALRAVTRHGDAVGLESPTYFNLLPLLASLGLKAVEIP
TDPQTGLSIDAVEVLLEEKRIQALVAMPNVHNPLGCCMPLENKKRLAKLVNRHQVPLIEDALYAELQFSDTLAPAVKAFD
ADGWVIVCASYTKTLAPDFRIGWMEGGRFGAALRKLKFASSVAQPAVLAETLGAFLESGGYDHHLRTLKRRYAAHVEKVR
GLIARHFPAGTRATQPQGGFLIWLELPEGCDSVALFHAAMAEKISLIPGPLSSPGGRYRNAMRLSCCYPLDERYLAALVR
VGQLACEQLAPNG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=284, Percent_Identity=22.887323943662, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33469970, Length=284, Percent_Identity=22.887323943662, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=34.8387096774194, Blast_Score=288, Evalue=4e-79,
Organism=Escherichia coli, GI1787710, Length=473, Percent_Identity=35.9408033826639, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53412; Mature: 53412

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNAVPLPAESPTMQNSAATLYQQLADDLSLAISRGTLPPGSRLPSVRRAAHSRQLSLNT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHH
VVSAYRVLEDRGLIEARPQSGYYVRARLPSPARQAGTESGPASPTKHAVLDLIGTVLQAQ
HHHHHHHHHHCCCEEECCCCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
QSEGFIDLALACPRGGDFYPGNKLARLMGQILRRQPGMVSTYALPPGPERLRTQIARRGM
CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
DLGMTLQPDNIILTHGCMEALQLALRAVTRHGDAVGLESPTYFNLLPLLASLGLKAVEIP
CCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
TDPQTGLSIDAVEVLLEEKRIQALVAMPNVHNPLGCCMPLENKKRLAKLVNRHQVPLIED
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
ALYAELQFSDTLAPAVKAFDADGWVIVCASYTKTLAPDFRIGWMEGGRFGAALRKLKFAS
HHHHHHCCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
SVAQPAVLAETLGAFLESGGYDHHLRTLKRRYAAHVEKVRGLIARHFPAGTRATQPQGGF
HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
LIWLELPEGCDSVALFHAAMAEKISLIPGPLSSPGGRYRNAMRLSCCYPLDERYLAALVR
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEECCCHHHHHHHHHH
VGQLACEQLAPNG
HHHHHHHHHCCCC
>Mature Secondary Structure
MMNAVPLPAESPTMQNSAATLYQQLADDLSLAISRGTLPPGSRLPSVRRAAHSRQLSLNT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHH
VVSAYRVLEDRGLIEARPQSGYYVRARLPSPARQAGTESGPASPTKHAVLDLIGTVLQAQ
HHHHHHHHHHCCCEEECCCCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
QSEGFIDLALACPRGGDFYPGNKLARLMGQILRRQPGMVSTYALPPGPERLRTQIARRGM
CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCC
DLGMTLQPDNIILTHGCMEALQLALRAVTRHGDAVGLESPTYFNLLPLLASLGLKAVEIP
CCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
TDPQTGLSIDAVEVLLEEKRIQALVAMPNVHNPLGCCMPLENKKRLAKLVNRHQVPLIED
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
ALYAELQFSDTLAPAVKAFDADGWVIVCASYTKTLAPDFRIGWMEGGRFGAALRKLKFAS
HHHHHHCCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
SVAQPAVLAETLGAFLESGGYDHHLRTLKRRYAAHVEKVRGLIARHFPAGTRATQPQGGF
HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
LIWLELPEGCDSVALFHAAMAEKISLIPGPLSSPGGRYRNAMRLSCCYPLDERYLAALVR
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEEECCCHHHHHHHHHH
VGQLACEQLAPNG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]