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The map label for this gene is rbcR [H]

Identifier: 34497338

GI number: 34497338

Start: 2044454

End: 2045374

Strand: Reverse

Name: rbcR [H]

Synonym: CV_1883

Alternate gene names: 34497338

Gene position: 2045374-2044454 (Counterclockwise)

Preceding gene: 34497344

Following gene: 34497336

Centisome position: 43.05

GC content: 67.43

Gene sequence:

>921_bases
ATGGAGTTCAACGATCAGCGGGTGCGCTACTTCTTTGAAGCCGCGCGCCTGGGCGGCGTGCGCGCGGCGGCGGACAGGAT
GGATATCGCGGCGTCGGCGGTCAGCCGGCAGATCCGCCAGCTGGAAATGGAGCTGGGCGCCACGCTGTTCGAGCGCCACC
GCCGCGGCTTCCAGCCCACCGAGGCCGGCCGGCTGCTGCTGGACTACCACCGCAAGCAGTTGAGCGAACAGGAAGCGGTG
TTGACGGCGCTGCGCGAGCTGAAGGGCATACACCGCGGCCACGTGTCCGTGGTGACCGGCGGCGGCGTGATCAGCGACCT
GATCGACGCCATCCACCCGTTCTCCCAGCGCTATCCGCAGATCACGGTGGGCATCGACATCCGCGGCACCAACGACATCG
TGCGCGCGGTGCTGGAAGATCGGGCCCACATCGGCGTCGTGTTCTATACGGCGCCCAACCCCTTGCTGCGGGTGCATCGC
AGCTCGATCCAGCCGTTATATGCGGTCGCCGCGCCCGATCACCCGCTGGCGCGCGCGGAACGCCCCATCCGCCTGGAAGA
GCTGGCCAGGCACAAGCTGGCGTTGCCGGATGTGAGCTTCGGCGTGCGGCAAATCCTGCGCGACGCGGAAAAGGCCGAAC
AATGCCAGCTGGAACCCGCCATCGTCACCAATTCCTTCCGGGTGATGGTGGAGTACGCGTTGACCGGCCAGGCGGCGACG
GTGCAGCCGCGCTTCTCCGTCCGGCGGGAGCTGGAAAGCGGGCAGTTGCAAGCCATCCCGATTCAACAACGCAATCTGCA
GCAGGCCGAGGTGCACCTGATCACCCATCACGGCCGCAGGCTAAGTCCCGCCGCCGCCAGGCTGCTGGAAACGCTGGCCG
CTTCCATGCCCGCTTTCCGCGACTCGGCCGTCACGCCATAG

Upstream 100 bases:

>100_bases
ATTATGAGCGGCGATTATAAGCAAATGACAAACAGCTCTCCAACATCATAAAATGCTTTCTTTGTTGCCTTTAAGGCAAC
GCAACTAGCCAGGACCGGAC

Downstream 100 bases:

>100_bases
CGCCCAAGCCTGCGCGCGCCAACTCGGCGAAGGCGCGCGCGGCCGCGCTGCGATAGCCGTCGCGTTTCGTCAGCAACGCG
GCCTGGCGGCCCGGCAGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MEFNDQRVRYFFEAARLGGVRAAADRMDIAASAVSRQIRQLEMELGATLFERHRRGFQPTEAGRLLLDYHRKQLSEQEAV
LTALRELKGIHRGHVSVVTGGGVISDLIDAIHPFSQRYPQITVGIDIRGTNDIVRAVLEDRAHIGVVFYTAPNPLLRVHR
SSIQPLYAVAAPDHPLARAERPIRLEELARHKLALPDVSFGVRQILRDAEKAEQCQLEPAIVTNSFRVMVEYALTGQAAT
VQPRFSVRRELESGQLQAIPIQQRNLQQAEVHLITHHGRRLSPAAARLLETLAASMPAFRDSAVTP

Sequences:

>Translated_306_residues
MEFNDQRVRYFFEAARLGGVRAAADRMDIAASAVSRQIRQLEMELGATLFERHRRGFQPTEAGRLLLDYHRKQLSEQEAV
LTALRELKGIHRGHVSVVTGGGVISDLIDAIHPFSQRYPQITVGIDIRGTNDIVRAVLEDRAHIGVVFYTAPNPLLRVHR
SSIQPLYAVAAPDHPLARAERPIRLEELARHKLALPDVSFGVRQILRDAEKAEQCQLEPAIVTNSFRVMVEYALTGQAAT
VQPRFSVRRELESGQLQAIPIQQRNLQQAEVHLITHHGRRLSPAAARLLETLAASMPAFRDSAVTP
>Mature_306_residues
MEFNDQRVRYFFEAARLGGVRAAADRMDIAASAVSRQIRQLEMELGATLFERHRRGFQPTEAGRLLLDYHRKQLSEQEAV
LTALRELKGIHRGHVSVVTGGGVISDLIDAIHPFSQRYPQITVGIDIRGTNDIVRAVLEDRAHIGVVFYTAPNPLLRVHR
SSIQPLYAVAAPDHPLARAERPIRLEELARHKLALPDVSFGVRQILRDAEKAEQCQLEPAIVTNSFRVMVEYALTGQAAT
VQPRFSVRRELESGQLQAIPIQQRNLQQAEVHLITHHGRRLSPAAARLLETLAASMPAFRDSAVTP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=240, Percent_Identity=30, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=187, Percent_Identity=28.3422459893048, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=25.2525252525253, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=291, Percent_Identity=25.4295532646048, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786401, Length=264, Percent_Identity=23.1060606060606, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34224; Mature: 34224

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFNDQRVRYFFEAARLGGVRAAADRMDIAASAVSRQIRQLEMELGATLFERHRRGFQPT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EAGRLLLDYHRKQLSEQEAVLTALRELKGIHRGHVSVVTGGGVISDLIDAIHPFSQRYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHCCCE
ITVGIDIRGTNDIVRAVLEDRAHIGVVFYTAPNPLLRVHRSSIQPLYAVAAPDHPLARAE
EEEEEEECCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHCC
RPIRLEELARHKLALPDVSFGVRQILRDAEKAEQCQLEPAIVTNSFRVMVEYALTGQAAT
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCHHEEEEEEEECCCCEE
VQPRFSVRRELESGQLQAIPIQQRNLQQAEVHLITHHGRRLSPAAARLLETLAASMPAFR
ECHHHHHHHHHCCCCEEEECCHHHCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCC
DSAVTP
CCCCCC
>Mature Secondary Structure
MEFNDQRVRYFFEAARLGGVRAAADRMDIAASAVSRQIRQLEMELGATLFERHRRGFQPT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EAGRLLLDYHRKQLSEQEAVLTALRELKGIHRGHVSVVTGGGVISDLIDAIHPFSQRYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCHHHHCCCE
ITVGIDIRGTNDIVRAVLEDRAHIGVVFYTAPNPLLRVHRSSIQPLYAVAAPDHPLARAE
EEEEEEECCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHCC
RPIRLEELARHKLALPDVSFGVRQILRDAEKAEQCQLEPAIVTNSFRVMVEYALTGQAAT
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCHHEEEEEEEECCCCEE
VQPRFSVRRELESGQLQAIPIQQRNLQQAEVHLITHHGRRLSPAAARLLETLAASMPAFR
ECHHHHHHHHHCCCCEEEECCHHHCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCC
DSAVTP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]