| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yejO [H]
Identifier: 34497333
GI number: 34497333
Start: 2039099
End: 2041672
Strand: Direct
Name: yejO [H]
Synonym: CV_1878
Alternate gene names: 34497333
Gene position: 2039099-2041672 (Clockwise)
Preceding gene: 34497332
Following gene: 34497334
Centisome position: 42.92
GC content: 67.95
Gene sequence:
>2574_bases ATGCGTACCCAAGCAGTCTCCAGGCCATTTCCATCCAGACCGGCCGGCATCATGTTTTTCGCGCTGTGCGGCGCCGGGGC CGGGCTGGCCTGCGCCGGCGCCGTCGGCGCGCCGCTGCGGACGCAGCAGGCGATGCAGACAACCATCGCCGGCGATCATG CCGGCGATTACGCGGAAGTGCTGGACGGGGCGTTGACGATTGCGCCTGGCGCCGCGCTCGGCGCGGATGGGCTGGGGACC TCCTTGCGGCAAAGCGGCGGCTATTCCGTCGTCGGCAGCGGCGCGCAATTGACCGGCGGTATTGAAATGACCGGCCATGC CGCCACGCGATTGGGCGTGGGGGCCGGTCCGCAGGCCAAAAGCTATCGCCTGGCGATGGCCGATGGTTCGGCGGCTCATC TGGACAATATCTGGCTGCGCAGCCTGCCGGATGGCGCCACTTCCGCGAACGGAGGCACCGCGCTGGATCTGCGGGACCAC GCGGCGGCGACGATGGGCGCCAACACGCGCATCCAGGCGACCGTTCCGTTGTCGGACGGAATGGAGCTGGTCGCGCATGC CTCCGCCATCGTGGATGGCTCCCGCATCGAGGGCACCATGTCGGGCGCGCAAGCGGCCGGGGCGGCGTTGCTGTCACTGC ATCGAGCGACTTTGATCGGCGGCGCGCAGGGACTGGTCGCGTCGCAACAAAGCCTGGTGACGGTATCGGGGGGGCAGATC GCCTCGCTCGGCACGACGTCGAATCCGCATGGCGATGTCGACAGCGTAGGCCTGTTCGCGATATCCGGCGGCCCGGCCGA CGCGCCGCTGAGCGTGGACGTTTCCGGCCATGCGGTGATCCAGGCCAAGGGCGCTCGCAGCGCGGGCCTGTTGGCCGAGG CCATCGATGCGCCTATCGAGGTTTCCGTCAGGGATTCCGTCATCCAGGGCGATCATGACGGCATCGTCGTCAATATGAAC CCTGTCTTGTCGGGTGGGGCGAAACTGGCCACGCTGGACGTGGCCGGCACCCAGGTTGTTTCCGGCGATGGCGCGGCCAT CCGGCTGGGGCGCGGCGCCAAGGCCGCCATCGCATTGAGTCGCAACGCTTCGGTGAATCCGGCGAGCGGCGTGGCGCTGC TGACGGGCGCGGGCAGCGAAGCGTCGGTCACGGTGGAGAACGCCGCGGTGAACGGGCGGGCGGTGAATCAGGGCGGGACC AGCCGTATCGCGTTGGGCGCCAACGGCGTTTGGCGCGGCGGCATGAGCGGTGTGGACAGTCTCACCGTCAACGCCGGCGG GCTGTGGGCGCTGGACGGTTCGTCCGATGTCGGCCAACTGGCCATGAACGGCGGGACGGTCAATCTGAATGGCGGATCCC AGGCGCATGTCTTGTCCGCGCGGACCTTGTCAGGGCACGGCAATTTCCTGCTGAAAACCGATCTGGCCGGCTATGCCGGC GACCAGCTGGCGGTCAGCGGCCTGGCAACCGGCAGCCATGTGCTGACCGTGGCCGATACCGGCAGGGCGGTCGCCGATCC CAAAAGCCTGCAAGTGGTGCGCACCGGGGGCGGCGACGCCGGTTTCTCGCTGGCCAACGGCGCGGTGGATTTGGGCGTCT ATCGTTATCGGCTGCAGCGGGACGGCTTCAACTGGAATCTGGTGCCGCTGACGACGGGCCGCTACAGCGCGTCGGCCACG TCGGTGTTGAACCTGATTTCCGCGTCTCCGGTCGTCTGGTACGGACAGGAGCGGACGTTGAGGAGCCGACTGGGCGAGCT GCGCTTCGATCGGGATCGCGGCGGCGCGTGGGTCCGGCCGTATGCCGGCGATTACCGGATCCTCGGCGTGACCGGCGCCG CCTTCCAGCAGCGGCAGAGCGGAATCGCGCTGGGCGCGGACCAGGCCTTGCCGCTGGGAGGCGGCAAGGCCTACGTCGGC GGAGTGTTCAATTACAGCCATGCCGAGCTGGACGATCATGCCGGCGCCAGCGGCGCGGTCGACGCCTATTCCGTCGGCCT GTACGGCGTGTGGCTGGCGCAGAACGGCGCCTATCTGCACGGGCTGGCGAGCTTGAACCGATATCAGAACCAGGGACAGG CCACGATGAGCAACGGCGTAAGGGCCAAGGGAAGTTATCGCCAGAATGGAGTCGGGGCCTCGCTGGAGGCGGGGCGGCGG TTCGCGCTGCCGCGCGACTGGTTCGTTCAGCCGTATGCTCAGCTTGCCGGCGTGAGGATGAACGGCGCCACTGTCGCGCT GGACAACGGCATGCTCGCGCAGGCCGATCATGCGGATTCCATCCAGGGAAGCGTGGGCGCCAGCCTGGGCAGGGGGATGC ATGCCGCGAAGGGCGGCGTGGCGGAGCCCTATGTGCGGCTGGCTGTGACCCATGAGTTCGTGAAGAACAATAGCGTGCGG GTGAACGGGCAGCCGTTCGACGCCAATTTGAACGGTTCCAGGGTGGAAATCGGCGCCGGCGTGTCGGCGGAGATCGGGAA GCGGCTGAGCGGGCACCTCGATTACGCCTATGCGAAAGGCCCCCGCCTGGAGAAGCCCTTCATGCTGGACGCCGGCATCC GTTACCAATGGTAG
Upstream 100 bases:
>100_bases CCCGCTCGCGCATCCATTTTCTTTGCGATGCCGCCGGAGGAGTGTTCCGGCTCATCGCGTGGCGGCATTCCAAATTTCCA ATTATTGAAGGGCGATTTCA
Downstream 100 bases:
>100_bases CCCGGAGGCGGCGCGCGGCAGGGGGGAGTCCTTTCGCCGCATGGGCGGCTAGGATTGTTCCCGAATGCCGCGCGCCGGAC CGGGCGGCTGGCCGCTCATG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 857; Mature: 857
Protein sequence:
>857_residues MRTQAVSRPFPSRPAGIMFFALCGAGAGLACAGAVGAPLRTQQAMQTTIAGDHAGDYAEVLDGALTIAPGAALGADGLGT SLRQSGGYSVVGSGAQLTGGIEMTGHAATRLGVGAGPQAKSYRLAMADGSAAHLDNIWLRSLPDGATSANGGTALDLRDH AAATMGANTRIQATVPLSDGMELVAHASAIVDGSRIEGTMSGAQAAGAALLSLHRATLIGGAQGLVASQQSLVTVSGGQI ASLGTTSNPHGDVDSVGLFAISGGPADAPLSVDVSGHAVIQAKGARSAGLLAEAIDAPIEVSVRDSVIQGDHDGIVVNMN PVLSGGAKLATLDVAGTQVVSGDGAAIRLGRGAKAAIALSRNASVNPASGVALLTGAGSEASVTVENAAVNGRAVNQGGT SRIALGANGVWRGGMSGVDSLTVNAGGLWALDGSSDVGQLAMNGGTVNLNGGSQAHVLSARTLSGHGNFLLKTDLAGYAG DQLAVSGLATGSHVLTVADTGRAVADPKSLQVVRTGGGDAGFSLANGAVDLGVYRYRLQRDGFNWNLVPLTTGRYSASAT SVLNLISASPVVWYGQERTLRSRLGELRFDRDRGGAWVRPYAGDYRILGVTGAAFQQRQSGIALGADQALPLGGGKAYVG GVFNYSHAELDDHAGASGAVDAYSVGLYGVWLAQNGAYLHGLASLNRYQNQGQATMSNGVRAKGSYRQNGVGASLEAGRR FALPRDWFVQPYAQLAGVRMNGATVALDNGMLAQADHADSIQGSVGASLGRGMHAAKGGVAEPYVRLAVTHEFVKNNSVR VNGQPFDANLNGSRVEIGAGVSAEIGKRLSGHLDYAYAKGPRLEKPFMLDAGIRYQW
Sequences:
>Translated_857_residues MRTQAVSRPFPSRPAGIMFFALCGAGAGLACAGAVGAPLRTQQAMQTTIAGDHAGDYAEVLDGALTIAPGAALGADGLGT SLRQSGGYSVVGSGAQLTGGIEMTGHAATRLGVGAGPQAKSYRLAMADGSAAHLDNIWLRSLPDGATSANGGTALDLRDH AAATMGANTRIQATVPLSDGMELVAHASAIVDGSRIEGTMSGAQAAGAALLSLHRATLIGGAQGLVASQQSLVTVSGGQI ASLGTTSNPHGDVDSVGLFAISGGPADAPLSVDVSGHAVIQAKGARSAGLLAEAIDAPIEVSVRDSVIQGDHDGIVVNMN PVLSGGAKLATLDVAGTQVVSGDGAAIRLGRGAKAAIALSRNASVNPASGVALLTGAGSEASVTVENAAVNGRAVNQGGT SRIALGANGVWRGGMSGVDSLTVNAGGLWALDGSSDVGQLAMNGGTVNLNGGSQAHVLSARTLSGHGNFLLKTDLAGYAG DQLAVSGLATGSHVLTVADTGRAVADPKSLQVVRTGGGDAGFSLANGAVDLGVYRYRLQRDGFNWNLVPLTTGRYSASAT SVLNLISASPVVWYGQERTLRSRLGELRFDRDRGGAWVRPYAGDYRILGVTGAAFQQRQSGIALGADQALPLGGGKAYVG GVFNYSHAELDDHAGASGAVDAYSVGLYGVWLAQNGAYLHGLASLNRYQNQGQATMSNGVRAKGSYRQNGVGASLEAGRR FALPRDWFVQPYAQLAGVRMNGATVALDNGMLAQADHADSIQGSVGASLGRGMHAAKGGVAEPYVRLAVTHEFVKNNSVR VNGQPFDANLNGSRVEIGAGVSAEIGKRLSGHLDYAYAKGPRLEKPFMLDAGIRYQW >Mature_857_residues MRTQAVSRPFPSRPAGIMFFALCGAGAGLACAGAVGAPLRTQQAMQTTIAGDHAGDYAEVLDGALTIAPGAALGADGLGT SLRQSGGYSVVGSGAQLTGGIEMTGHAATRLGVGAGPQAKSYRLAMADGSAAHLDNIWLRSLPDGATSANGGTALDLRDH AAATMGANTRIQATVPLSDGMELVAHASAIVDGSRIEGTMSGAQAAGAALLSLHRATLIGGAQGLVASQQSLVTVSGGQI ASLGTTSNPHGDVDSVGLFAISGGPADAPLSVDVSGHAVIQAKGARSAGLLAEAIDAPIEVSVRDSVIQGDHDGIVVNMN PVLSGGAKLATLDVAGTQVVSGDGAAIRLGRGAKAAIALSRNASVNPASGVALLTGAGSEASVTVENAAVNGRAVNQGGT SRIALGANGVWRGGMSGVDSLTVNAGGLWALDGSSDVGQLAMNGGTVNLNGGSQAHVLSARTLSGHGNFLLKTDLAGYAG DQLAVSGLATGSHVLTVADTGRAVADPKSLQVVRTGGGDAGFSLANGAVDLGVYRYRLQRDGFNWNLVPLTTGRYSASAT SVLNLISASPVVWYGQERTLRSRLGELRFDRDRGGAWVRPYAGDYRILGVTGAAFQQRQSGIALGADQALPLGGGKAYVG GVFNYSHAELDDHAGASGAVDAYSVGLYGVWLAQNGAYLHGLASLNRYQNQGQATMSNGVRAKGSYRQNGVGASLEAGRR FALPRDWFVQPYAQLAGVRMNGATVALDNGMLAQADHADSIQGSVGASLGRGMHAAKGGVAEPYVRLAVTHEFVKNNSVR VNGQPFDANLNGSRVEIGAGVSAEIGKRLSGHLDYAYAKGPRLEKPFMLDAGIRYQW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI87082145, Length=471, Percent_Identity=32.2717622080679, Blast_Score=222, Evalue=9e-59, Organism=Escherichia coli, GI1787452, Length=733, Percent_Identity=25.5115961800819, Blast_Score=151, Evalue=2e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 - InterPro: IPR004899 - InterPro: IPR003991 [H]
Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]
EC number: NA
Molecular weight: Translated: 86665; Mature: 86665
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTQAVSRPFPSRPAGIMFFALCGAGAGLACAGAVGAPLRTQQAMQTTIAGDHAGDYAEV CCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHH LDGALTIAPGAALGADGLGTSLRQSGGYSVVGSGAQLTGGIEMTGHAATRLGVGAGPQAK HCCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCEEECCEEECCCHHHEECCCCCCCCC SYRLAMADGSAAHLDNIWLRSLPDGATSANGGTALDLRDHAAATMGANTRIQATVPLSDG CEEEEEECCCCHHHCCHHHHCCCCCCCCCCCCEEEEEHHCHHHHCCCCCEEEEEEECCCC MELVAHASAIVDGSRIEGTMSGAQAAGAALLSLHRATLIGGAQGLVASQQSLVTVSGGQI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEECCCEE ASLGTTSNPHGDVDSVGLFAISGGPADAPLSVDVSGHAVIQAKGARSAGLLAEAIDAPIE EECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHCCCEE VSVRDSVIQGDHDGIVVNMNPVLSGGAKLATLDVAGTQVVSGDGAAIRLGRGAKAAIALS EEEECCEEECCCCCEEEECCCCCCCCCEEEEEEECCCEEECCCCCEEEECCCCEEEEEEE RNASVNPASGVALLTGAGSEASVTVENAAVNGRAVNQGGTSRIALGANGVWRGGMSGVDS CCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEECCCCCEEEEECCCCCCCCCCCCCCE LTVNAGGLWALDGSSDVGQLAMNGGTVNLNGGSQAHVLSARTLSGHGNFLLKTDLAGYAG EEEECCEEEEECCCCCCCCEEECCCEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCC DQLAVSGLATGSHVLTVADTGRAVADPKSLQVVRTGGGDAGFSLANGAVDLGVYRYRLQR CCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECCCCEEEEEEEEEEEC DGFNWNLVPLTTGRYSASATSVLNLISASPVVWYGQERTLRSRLGELRFDRDRGGAWVRP CCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHCCCEEECCCCCEEEEC YAGDYRILGVTGAAFQQRQSGIALGADQALPLGGGKAYVGGVFNYSHAELDDHAGASGAV CCCCEEEEEECCHHHHHHHCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC DAYSVGLYGVWLAQNGAYLHGLASLNRYQNQGQATMSNGVRAKGSYRQNGVGASLEAGRR EEEEECEEEEEEECCCCEEEHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCCCCCHHCCCE FALPRDWFVQPYAQLAGVRMNGATVALDNGMLAQADHADSIQGSVGASLGRGMHAAKGGV ECCCHHHHHCCHHHHCCEEECCEEEEECCCEEEECCCCCCCCCHHHHHHHCCCHHHCCCC AEPYVRLAVTHEFVKNNSVRVNGQPFDANLNGSRVEIGAGVSAEIGKRLSGHLDYAYAKG CCCEEEEEEEHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEECCC PRLEKPFMLDAGIRYQW CCCCCCEEECCCCEECC >Mature Secondary Structure MRTQAVSRPFPSRPAGIMFFALCGAGAGLACAGAVGAPLRTQQAMQTTIAGDHAGDYAEV CCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHH LDGALTIAPGAALGADGLGTSLRQSGGYSVVGSGAQLTGGIEMTGHAATRLGVGAGPQAK HCCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCEEECCEEECCCHHHEECCCCCCCCC SYRLAMADGSAAHLDNIWLRSLPDGATSANGGTALDLRDHAAATMGANTRIQATVPLSDG CEEEEEECCCCHHHCCHHHHCCCCCCCCCCCCEEEEEHHCHHHHCCCCCEEEEEEECCCC MELVAHASAIVDGSRIEGTMSGAQAAGAALLSLHRATLIGGAQGLVASQQSLVTVSGGQI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEECCCEE ASLGTTSNPHGDVDSVGLFAISGGPADAPLSVDVSGHAVIQAKGARSAGLLAEAIDAPIE EECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHCCCEE VSVRDSVIQGDHDGIVVNMNPVLSGGAKLATLDVAGTQVVSGDGAAIRLGRGAKAAIALS EEEECCEEECCCCCEEEECCCCCCCCCEEEEEEECCCEEECCCCCEEEECCCCEEEEEEE RNASVNPASGVALLTGAGSEASVTVENAAVNGRAVNQGGTSRIALGANGVWRGGMSGVDS CCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEECCCCCEEEEECCCCCCCCCCCCCCE LTVNAGGLWALDGSSDVGQLAMNGGTVNLNGGSQAHVLSARTLSGHGNFLLKTDLAGYAG EEEECCEEEEECCCCCCCCEEECCCEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCC DQLAVSGLATGSHVLTVADTGRAVADPKSLQVVRTGGGDAGFSLANGAVDLGVYRYRLQR CCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECCCCEEEEEEEEEEEC DGFNWNLVPLTTGRYSASATSVLNLISASPVVWYGQERTLRSRLGELRFDRDRGGAWVRP CCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHCCCEEECCCCCEEEEC YAGDYRILGVTGAAFQQRQSGIALGADQALPLGGGKAYVGGVFNYSHAELDDHAGASGAV CCCCEEEEEECCHHHHHHHCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC DAYSVGLYGVWLAQNGAYLHGLASLNRYQNQGQATMSNGVRAKGSYRQNGVGASLEAGRR EEEEECEEEEEEECCCCEEEHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCCCCCHHCCCE FALPRDWFVQPYAQLAGVRMNGATVALDNGMLAQADHADSIQGSVGASLGRGMHAAKGGV ECCCHHHHHCCHHHHCCEEECCEEEEECCCEEEECCCCCCCCCHHHHHHHCCCHHHCCCC AEPYVRLAVTHEFVKNNSVRVNGQPFDANLNGSRVEIGAGVSAEIGKRLSGHLDYAYAKG CCCEEEEEEEHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEECCC PRLEKPFMLDAGIRYQW CCCCCCEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]