| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497276
Identifier: 34497276
GI number: 34497276
Start: 1978986
End: 1979954
Strand: Reverse
Name: 34497276
Synonym: CV_1821
Alternate gene names: NA
Gene position: 1979954-1978986 (Counterclockwise)
Preceding gene: 34497280
Following gene: 34497274
Centisome position: 41.67
GC content: 69.35
Gene sequence:
>969_bases ATGAGCGTTTCGCATCGCAAGTCACTGCAGCAGATGACGCAGGACACCCATTCTCCGGCGCCATGGCGGCCGGAAGACGC GGATCGCGCGGCAAGGCTCCCTCTCCTGCTGCAACAGGCGCTGCGGCGCGAGCACAGCCTGATCCCGCCGCTTCTCGCCG CATGGCTGTCGCTGAAACCCGCCGCCAATCGTGCGCTGGCCGGCCTGCTCCAGGAGGCGATCGCGTCGCAGCTGCGGCGC ATGGCGCTGGCCGCCAATCTGCAGATCGCCATCGGCGGGCGACCGCGCGCGGCACTGCCAGGCTTCGTGCCAGCCTATCC CGCAACGCCGCCGCTGATGCCGCCGCATTCGCCCCCGATGGGGATAGAACGGTTCAGCCCCCGCCTGCTGCGCGACACGC TGCTGCCCCAGATCGCCCTCGGGTCAGCCGGCGACGCCGGAATCGCCGGCTTCTATCTCGCCATGCGCCGCGAGTTCGAA CCGCTCGATCGGCAGCGCGGTTTCGACACTGCAAGGCGACAGCTGCTGGAACACGTTCCCGGCGCGCCGTTGCCAGTCAT CCGCGACACGGACAGCGCCCTGGCCGCGCTTGACGAATTGGCTTCCCACGACACGCCGCTGCGCAATGGATTGGCGGCCT TCGCCGCATCCGACTCGCCAACCGGCTTCGCGCCGGATGGCGTATGGGCGATGCCCGCCAATGCCCGCATCGACGACCAC GCCCCCGGCAGTCCCGAACGCTCGCTGCTGGAACGCTACGCGGCATGCTATGCCGACTTTCTGCGCGGCCTGGACGCCGC CTTCGGCGGGAGCCCTGTGGCCATGGCCCAAGCGATGGATCTGATCTTCGACCTCAAACTGCTGGCCGCGGGCCTGATGA ATCCGGCCGTCAGCGTCGCGCCGGACGGGCATGCGCCTTGCCCGCCGCTTGGGCTCTGCTTTAGCCGCCAGACGGCGGCA ACGGCTTGA
Upstream 100 bases:
>100_bases GTCTACACCAAAGAACAGTACGCGCCGTAGCGGCGGCCCGTCCATGCTTCCATCGTTGTCGGCGCCAACACGGCGCGCCT TTTCCGAGGGAGAATCCGGC
Downstream 100 bases:
>100_bases TTCTCCCGGCGCGATCCCGGAATGCAAAAAGCCCATGCGCGAACGCATGGGCTTTTTTTGAATTCCTGGCTCCCCGAGCA GGGCTCGAACCTGCGACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSVSHRKSLQQMTQDTHSPAPWRPEDADRAARLPLLLQQALRREHSLIPPLLAAWLSLKPAANRALAGLLQEAIASQLRR MALAANLQIAIGGRPRAALPGFVPAYPATPPLMPPHSPPMGIERFSPRLLRDTLLPQIALGSAGDAGIAGFYLAMRREFE PLDRQRGFDTARRQLLEHVPGAPLPVIRDTDSALAALDELASHDTPLRNGLAAFAASDSPTGFAPDGVWAMPANARIDDH APGSPERSLLERYAACYADFLRGLDAAFGGSPVAMAQAMDLIFDLKLLAAGLMNPAVSVAPDGHAPCPPLGLCFSRQTAA TA
Sequences:
>Translated_322_residues MSVSHRKSLQQMTQDTHSPAPWRPEDADRAARLPLLLQQALRREHSLIPPLLAAWLSLKPAANRALAGLLQEAIASQLRR MALAANLQIAIGGRPRAALPGFVPAYPATPPLMPPHSPPMGIERFSPRLLRDTLLPQIALGSAGDAGIAGFYLAMRREFE PLDRQRGFDTARRQLLEHVPGAPLPVIRDTDSALAALDELASHDTPLRNGLAAFAASDSPTGFAPDGVWAMPANARIDDH APGSPERSLLERYAACYADFLRGLDAAFGGSPVAMAQAMDLIFDLKLLAAGLMNPAVSVAPDGHAPCPPLGLCFSRQTAA TA >Mature_321_residues SVSHRKSLQQMTQDTHSPAPWRPEDADRAARLPLLLQQALRREHSLIPPLLAAWLSLKPAANRALAGLLQEAIASQLRRM ALAANLQIAIGGRPRAALPGFVPAYPATPPLMPPHSPPMGIERFSPRLLRDTLLPQIALGSAGDAGIAGFYLAMRREFEP LDRQRGFDTARRQLLEHVPGAPLPVIRDTDSALAALDELASHDTPLRNGLAAFAASDSPTGFAPDGVWAMPANARIDDHA PGSPERSLLERYAACYADFLRGLDAAFGGSPVAMAQAMDLIFDLKLLAAGLMNPAVSVAPDGHAPCPPLGLCFSRQTAAT A
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34329; Mature: 34198
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSHRKSLQQMTQDTHSPAPWRPEDADRAARLPLLLQQALRREHSLIPPLLAAWLSLKP CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCH AANRALAGLLQEAIASQLRRMALAANLQIAIGGRPRAALPGFVPAYPATPPLMPPHSPPM HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GIERFSPRLLRDTLLPQIALGSAGDAGIAGFYLAMRREFEPLDRQRGFDTARRQLLEHVP CHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCC GAPLPVIRDTDSALAALDELASHDTPLRNGLAAFAASDSPTGFAPDGVWAMPANARIDDH CCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC APGSPERSLLERYAACYADFLRGLDAAFGGSPVAMAQAMDLIFDLKLLAAGLMNPAVSVA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC PDGHAPCPPLGLCFSRQTAATA CCCCCCCCCHHHHHCCHHHCCC >Mature Secondary Structure SVSHRKSLQQMTQDTHSPAPWRPEDADRAARLPLLLQQALRREHSLIPPLLAAWLSLKP CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCH AANRALAGLLQEAIASQLRRMALAANLQIAIGGRPRAALPGFVPAYPATPPLMPPHSPPM HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GIERFSPRLLRDTLLPQIALGSAGDAGIAGFYLAMRREFEPLDRQRGFDTARRQLLEHVP CHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCC GAPLPVIRDTDSALAALDELASHDTPLRNGLAAFAASDSPTGFAPDGVWAMPANARIDDH CCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC APGSPERSLLERYAACYADFLRGLDAAFGGSPVAMAQAMDLIFDLKLLAAGLMNPAVSVA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC PDGHAPCPPLGLCFSRQTAATA CCCCCCCCCHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA