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The map label for this gene is slyB [H]

Identifier: 34497266

GI number: 34497266

Start: 1969342

End: 1969803

Strand: Reverse

Name: slyB [H]

Synonym: CV_1811

Alternate gene names: 34497266

Gene position: 1969803-1969342 (Counterclockwise)

Preceding gene: 34497267

Following gene: 34497265

Centisome position: 41.46

GC content: 65.58

Gene sequence:

>462_bases
ATGATTTCTTCCCTCAACCGCATCACCCTGATCAGCCTTCTGAGCGTCGGCGTGCTCGCCGGCTGCTCGACGTCCGACTC
CGCAGCTGTCTACTCCAAGGGTCAGATGCGTCAGGCGCAGACCGTGCAGCTCGGCACCGTGCTGTCGGTGCAGAACGTGA
AAATGGAAGGCCAGAACAATGAGCTGCTGACCCTCGGCGGCGCCGCGCTGGGCGGCCTGGCCGGCAGCAACATCGGCGGC
GGCAAGGGCCAGATCGCCGGCGGCATCGTCGGTGCGCTGGCCGGCGGCTTCGGCACCCAGGCCGCGCAACGCGCGATGAC
CAAGAACGCGCTGGAAATCACCGTCAAGCTGGATACCGGCCGCACCATTTCCATCGTCCAGGAAGCCGACATCCCCTTCG
TCGTCAACCAGCGCGTCAAAGTGCTGAGCGGCGGCGGCAACGACCGCGTCGTGCCATACTAA

Upstream 100 bases:

>100_bases
GGCCTGATCTATCGCGGCCCTGAACTGGTCGGCGAATGCGCCCGGGCGACGGCGCAATATCTACAAGCTCGCAACTAAAG
TTAAGAATGGAGCAGGAAAA

Downstream 100 bases:

>100_bases
CCTTTCTCCCCGAACGCGACGTTTCATCGCAGAGCCGATGTTGGCGTATCATATGGCATGATCTGCCGCGATACGCCAAC
CCGGTTCGCGAAAGCGCCAC

Product: PAL cross-reacting lipoprotein

Products: NA

Alternate protein names: 15 kDa lipoprotein; PAL cross-reacting lipoprotein [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MISSLNRITLISLLSVGVLAGCSTSDSAAVYSKGQMRQAQTVQLGTVLSVQNVKMEGQNNELLTLGGAALGGLAGSNIGG
GKGQIAGGIVGALAGGFGTQAAQRAMTKNALEITVKLDTGRTISIVQEADIPFVVNQRVKVLSGGGNDRVVPY

Sequences:

>Translated_153_residues
MISSLNRITLISLLSVGVLAGCSTSDSAAVYSKGQMRQAQTVQLGTVLSVQNVKMEGQNNELLTLGGAALGGLAGSNIGG
GKGQIAGGIVGALAGGFGTQAAQRAMTKNALEITVKLDTGRTISIVQEADIPFVVNQRVKVLSGGGNDRVVPY
>Mature_153_residues
MISSLNRITLISLLSVGVLAGCSTSDSAAVYSKGQMRQAQTVQLGTVLSVQNVKMEGQNNELLTLGGAALGGLAGSNIGG
GKGQIAGGIVGALAGGFGTQAAQRAMTKNALEITVKLDTGRTISIVQEADIPFVVNQRVKVLSGGGNDRVVPY

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI48994887, Length=154, Percent_Identity=35.0649350649351, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 15486; Mature: 15486

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSLNRITLISLLSVGVLAGCSTSDSAAVYSKGQMRQAQTVQLGTVLSVQNVKMEGQNN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECEEEEEEEEEECCCCC
ELLTLGGAALGGLAGSNIGGGKGQIAGGIVGALAGGFGTQAAQRAMTKNALEITVKLDTG
CEEEECCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCC
RTISIVQEADIPFVVNQRVKVLSGGGNDRVVPY
CEEEEEEECCCCEEECCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MISSLNRITLISLLSVGVLAGCSTSDSAAVYSKGQMRQAQTVQLGTVLSVQNVKMEGQNN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECEEEEEEEEEECCCCC
ELLTLGGAALGGLAGSNIGGGKGQIAGGIVGALAGGFGTQAAQRAMTKNALEITVKLDTG
CEEEECCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCC
RTISIVQEADIPFVVNQRVKVLSGGGNDRVVPY
CEEEEEEECCCCEEECCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 7542800 [H]