| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yehU [H]
Identifier: 34497120
GI number: 34497120
Start: 1803779
End: 1805551
Strand: Reverse
Name: yehU [H]
Synonym: CV_1665
Alternate gene names: 34497120
Gene position: 1805551-1803779 (Counterclockwise)
Preceding gene: 34497122
Following gene: 34497119
Centisome position: 38.0
GC content: 66.95
Gene sequence:
>1773_bases TTGAGCCAGAACAAGGCCGCGGGGACGGCACGGTCGTTAAACTGTTCTCGCGCAAACAATCCATGCCATCGAATGATCGT AGAACTGACCCTGGTGCTGTCGCTGCTGCAGCAGATGTGCGTTTATCTGGTGATCGCCTACCTGCTGTCCAAGACGCCGC TGTTCATCCCGCTGACCCAGATCACGCTGCAATTGCCCCACAAGCTGGTCTGTTATCTGGTGTTTTCGATGTTTTGCATC ATGGGCACCTATTTCGGCCTGCACATCCAGGACTCCATCGCCAATACCCGCGCCATCGGCGCGGTGCTGGGCGGCATGCT GGGCGGCCCCTGGGTGGGGCTGGCGGTGGGCTTCACCGGCGGCCTGCACCGCTATTCGCTGGGCGGGCTCACCGCCGGCG CCTGCATGGTGTCGACGATGATGGAGGGCCTGCTGGGCGGCCTGGTGCATCTCTACCTGGTGCGCCGCGGCCTGCGCGCG CGGCTGTTCGACCCGCTGGTGGTGGCGGCGGTGGCCTGCGTCGCCGAGATCGGCCAGATGCTGATCCTGCTGGCGCTGGT GCGCCCGTCCGAGGCGGCCGAACGCCTGGTGGCCAGCATCGCGCTGCCGATGATGGCGGCCAACACGCTGGGGGCGGCGA TGTTCATGCGCATTCTGCTGGACCGCCGGGTGCTGGCGGAAAAATACTCCACCGCCTTCTCCGGCAAGGCGCTGCAGATC GCTGCCCGCGCCGAAGGGGTGCTGCGCCAGGGCTTCGACCCGGAAAACAGCATGACCGTGGCGCGCATCCTGTACGAGGA GCTGGGCGTCGGCGCGGTGGCCATCACCGACCGCGAGCGGCTGCTGGCCTTCATCGGCATAGGCGCGGATCATCACCTGC CCGGCACGGCCATCACCTCGCCGCACACCCACCGCGCGATCGAGCGCAACGAGGTGGTGTACGCCGACGGCAACGAAACG CCCTACCGCTGCTCGATCAGCCCCCAGTGCCGGCTGGCGTCCTCGCTGGTGATCCCGCTGCGCGGCGAGGACGAACGGGT GATCGGCACCATCAAGCTGTACGAGCCGCGCAACAAGCTGTTCTCCCGCATCAACCTGACGCTGGGCGAAGGCATCGCCC GCCTGCTGTCCGCCCAGATCCTGCAGGGCCAGTACGATAAACAAAAGCAGCTGCTGGCGCAGACCGAGATCAAACTGCTG CACGCCCAAGTGAACCCGCACTTCCTGTTCAACGCTCTGAACACGCTGTCGGCGGTGATACGGCGCAACCCGGAACATGC CCGCCGGCTGGTGCAGTACCTGTCCACCTTCTTCCGCAAGAACCTGAAACGCTCCGGCGAAGCGGCGACGCTGGAGGACG AGATCGAACACGTCAGCGCCTACCTGCGCATCGAGGAAGCGCGCTTCGCCGGGAGGCTGGACGTGGAGATCTCGCTGGAC GAGGCGGCCCGCCGGGCGCGGCTGCCGGCGTTCTCGCTGCAGCCCATCGTCGAGAATGCCATCAAGCACGGCACCTCCCA ACTACTGGAAGCCGGCCGCATCCGCATCGCCGCGCGCTGCGCCGACGGCAGGCTTTGCGTGACGGTGGAAGACAACGCCG GCCTGTACGCGCCGGCCGGCCCCGGCGACGGCTTAGGCATGTCGCTGGTGGACCGGCGCATCCGCGCCCGGCACGGACCG GCTTACGGCGTGTCGGTGGAGTGCGAGCCGGAGGCCTATACCCGCGTCACGCTCAGCGTGCCCTGCCCCGAGCCTGGAGA AATCCCATGCTGA
Upstream 100 bases:
>100_bases CAACGCAGCTAAAGACAACGAAACCGCAAGGATACCGGAAAGCCGCCCGGGCCGACACCAGGCCCCTGGCGCCCGGGCAG CGGCCGGATGCCGTCCACCC
Downstream 100 bases:
>100_bases AAACCCTGCTGGTCGACGACGAGCCGCTGGCACGCGACGAATTGCGCGAGCTGCTGGCCGCGCATGGCGATTTCGACATC GTCGGCGAATGCGGCAACGC
Product: two-component system sensor kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 590; Mature: 589
Protein sequence:
>590_residues MSQNKAAGTARSLNCSRANNPCHRMIVELTLVLSLLQQMCVYLVIAYLLSKTPLFIPLTQITLQLPHKLVCYLVFSMFCI MGTYFGLHIQDSIANTRAIGAVLGGMLGGPWVGLAVGFTGGLHRYSLGGLTAGACMVSTMMEGLLGGLVHLYLVRRGLRA RLFDPLVVAAVACVAEIGQMLILLALVRPSEAAERLVASIALPMMAANTLGAAMFMRILLDRRVLAEKYSTAFSGKALQI AARAEGVLRQGFDPENSMTVARILYEELGVGAVAITDRERLLAFIGIGADHHLPGTAITSPHTHRAIERNEVVYADGNET PYRCSISPQCRLASSLVIPLRGEDERVIGTIKLYEPRNKLFSRINLTLGEGIARLLSAQILQGQYDKQKQLLAQTEIKLL HAQVNPHFLFNALNTLSAVIRRNPEHARRLVQYLSTFFRKNLKRSGEAATLEDEIEHVSAYLRIEEARFAGRLDVEISLD EAARRARLPAFSLQPIVENAIKHGTSQLLEAGRIRIAARCADGRLCVTVEDNAGLYAPAGPGDGLGMSLVDRRIRARHGP AYGVSVECEPEAYTRVTLSVPCPEPGEIPC
Sequences:
>Translated_590_residues MSQNKAAGTARSLNCSRANNPCHRMIVELTLVLSLLQQMCVYLVIAYLLSKTPLFIPLTQITLQLPHKLVCYLVFSMFCI MGTYFGLHIQDSIANTRAIGAVLGGMLGGPWVGLAVGFTGGLHRYSLGGLTAGACMVSTMMEGLLGGLVHLYLVRRGLRA RLFDPLVVAAVACVAEIGQMLILLALVRPSEAAERLVASIALPMMAANTLGAAMFMRILLDRRVLAEKYSTAFSGKALQI AARAEGVLRQGFDPENSMTVARILYEELGVGAVAITDRERLLAFIGIGADHHLPGTAITSPHTHRAIERNEVVYADGNET PYRCSISPQCRLASSLVIPLRGEDERVIGTIKLYEPRNKLFSRINLTLGEGIARLLSAQILQGQYDKQKQLLAQTEIKLL HAQVNPHFLFNALNTLSAVIRRNPEHARRLVQYLSTFFRKNLKRSGEAATLEDEIEHVSAYLRIEEARFAGRLDVEISLD EAARRARLPAFSLQPIVENAIKHGTSQLLEAGRIRIAARCADGRLCVTVEDNAGLYAPAGPGDGLGMSLVDRRIRARHGP AYGVSVECEPEAYTRVTLSVPCPEPGEIPC >Mature_589_residues SQNKAAGTARSLNCSRANNPCHRMIVELTLVLSLLQQMCVYLVIAYLLSKTPLFIPLTQITLQLPHKLVCYLVFSMFCIM GTYFGLHIQDSIANTRAIGAVLGGMLGGPWVGLAVGFTGGLHRYSLGGLTAGACMVSTMMEGLLGGLVHLYLVRRGLRAR LFDPLVVAAVACVAEIGQMLILLALVRPSEAAERLVASIALPMMAANTLGAAMFMRILLDRRVLAEKYSTAFSGKALQIA ARAEGVLRQGFDPENSMTVARILYEELGVGAVAITDRERLLAFIGIGADHHLPGTAITSPHTHRAIERNEVVYADGNETP YRCSISPQCRLASSLVIPLRGEDERVIGTIKLYEPRNKLFSRINLTLGEGIARLLSAQILQGQYDKQKQLLAQTEIKLLH AQVNPHFLFNALNTLSAVIRRNPEHARRLVQYLSTFFRKNLKRSGEAATLEDEIEHVSAYLRIEEARFAGRLDVEISLDE AARRARLPAFSLQPIVENAIKHGTSQLLEAGRIRIAARCADGRLCVTVEDNAGLYAPAGPGDGLGMSLVDRRIRARHGPA YGVSVECEPEAYTRVTLSVPCPEPGEIPC
Specific function: Unknown
COG id: COG3275
COG function: function code T; Putative regulator of cell autolysis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788446, Length=555, Percent_Identity=67.3873873873874, Blast_Score=758, Evalue=0.0, Organism=Escherichia coli, GI1788723, Length=547, Percent_Identity=27.7879341864717, Blast_Score=223, Evalue=2e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR010559 - InterPro: IPR011620 [H]
Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]
EC number: NA
Molecular weight: Translated: 64365; Mature: 64234
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNKAAGTARSLNCSRANNPCHRMIVELTLVLSLLQQMCVYLVIAYLLSKTPLFIPLTQ CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH ITLQLPHKLVCYLVFSMFCIMGTYFGLHIQDSIANTRAIGAVLGGMLGGPWVGLAVGFTG HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC GLHRYSLGGLTAGACMVSTMMEGLLGGLVHLYLVRRGLRARLFDPLVVAAVACVAEIGQM CCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LILLALVRPSEAAERLVASIALPMMAANTLGAAMFMRILLDRRVLAEKYSTAFSGKALQI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE AARAEGVLRQGFDPENSMTVARILYEELGVGAVAITDRERLLAFIGIGADHHLPGTAITS HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHEEEEEECCCCCCCCCCCCCC PHTHRAIERNEVVYADGNETPYRCSISPQCRLASSLVIPLRGEDERVIGTIKLYEPRNKL CCHHHHHCCCCEEEECCCCCCEEECCCCCHHHHCCEEEEECCCCCEEEEEEEEECCHHHH FSRINLTLGEGIARLLSAQILQGQYDKQKQLLAQTEIKLLHAQVNPHFLFNALNTLSAVI HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH RRNPEHARRLVQYLSTFFRKNLKRSGEAATLEDEIEHVSAYLRIEEARFAGRLDVEISLD HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH EAARRARLPAFSLQPIVENAIKHGTSQLLEAGRIRIAARCADGRLCVTVEDNAGLYAPAG HHHHHHCCCCCCHHHHHHHHHHHCHHHHHHCCCEEEEEEECCCEEEEEEECCCCEECCCC PGDGLGMSLVDRRIRARHGPAYGVSVECEPEAYTRVTLSVPCPEPGEIPC CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC >Mature Secondary Structure SQNKAAGTARSLNCSRANNPCHRMIVELTLVLSLLQQMCVYLVIAYLLSKTPLFIPLTQ CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH ITLQLPHKLVCYLVFSMFCIMGTYFGLHIQDSIANTRAIGAVLGGMLGGPWVGLAVGFTG HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC GLHRYSLGGLTAGACMVSTMMEGLLGGLVHLYLVRRGLRARLFDPLVVAAVACVAEIGQM CCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LILLALVRPSEAAERLVASIALPMMAANTLGAAMFMRILLDRRVLAEKYSTAFSGKALQI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE AARAEGVLRQGFDPENSMTVARILYEELGVGAVAITDRERLLAFIGIGADHHLPGTAITS HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHEEEEEECCCCCCCCCCCCCC PHTHRAIERNEVVYADGNETPYRCSISPQCRLASSLVIPLRGEDERVIGTIKLYEPRNKL CCHHHHHCCCCEEEECCCCCCEEECCCCCHHHHCCEEEEECCCCCEEEEEEEEECCHHHH FSRINLTLGEGIARLLSAQILQGQYDKQKQLLAQTEIKLLHAQVNPHFLFNALNTLSAVI HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH RRNPEHARRLVQYLSTFFRKNLKRSGEAATLEDEIEHVSAYLRIEEARFAGRLDVEISLD HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH EAARRARLPAFSLQPIVENAIKHGTSQLLEAGRIRIAARCADGRLCVTVEDNAGLYAPAG HHHHHHCCCCCCHHHHHHHHHHHCHHHHHHCCCEEEEEEECCCEEEEEEECCCCEECCCC PGDGLGMSLVDRRIRARHGPAYGVSVECEPEAYTRVTLSVPCPEPGEIPC CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]