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The map label for this gene is yciR [C]

Identifier: 34497033

GI number: 34497033

Start: 1695178

End: 1697316

Strand: Reverse

Name: yciR [C]

Synonym: CV_1578

Alternate gene names: 34497033

Gene position: 1697316-1695178 (Counterclockwise)

Preceding gene: 34497038

Following gene: 34497032

Centisome position: 35.72

GC content: 65.83

Gene sequence:

>2139_bases
ATGCCGGTGCCAGGTGACATTCTGGTCGTCGACGACACCATGACCGCGCTGATGATGCTGGTGGCCCTGCTGTCTACGCA
AGGCTATCAGGTCAGCTCCGCCCAGAGCGGGGCCGAGGCGCTGGATCTGGCCTTGAAGCATCCGCCGGACCTCATCCTGC
TGGACTTCAGCATGCCCGGGATGGACGGGCTGGCCGTGTGCCGCGAGCTCAAGCTGAACCCGCGCACCCGCGACATCCCC
ATCCTGTTCCTCAGTTCGGTCAGCGACTCCCAGACCAAGGTCGACGGCTTCGCCGCCGGCGCCGTGGATTTCATCATCAA
GCCCTTCGAGCGCAGCGAGCTGCTGGCCCGGGTCAACACCCACCTCGACCTGGCGCGGCTGAAGAAACGGCTGAGCAAGC
TGGTGGAAGAGAAAACGGAGTCGCTGCGGCTGAGCGAACAGCGCTTCCGCGCGCTGATCGAGCAGGCGCCGGAAGCCATC
ATGGTGTACAACATGGACACCGGCCGCTTCGTCGACGCCAACCGGCAAGCGGAAAAACTCACCGGCCGCTCGCTGCAGAC
CCTGGTCGGCATCAGCCCCGCCGCGCTGTACGCGCCCGAGCAGCCCGACGGCCTGCCGGTGGCGGAAAGCGTCAGCATGC
ATTCCGAGCAGGCGCAAAAGGGCGACATCCCGCCGTTCGAGCGCATCGTGCAGCGCCCCGACGGCAGCGCCATTCCCTGC
GAGGTGCGGCTGAGCAAGCTGCCCAGCGAAACCGGCAACCTGCTGCGCGTCAGCTATATCGACATCTCCTCCCGCGTGGC
GGCCCAGGAAAAGATCAATCGCCTGGCCTATTTCGACACGCTGACCGGCCTGCACAACCAGAGCGGCCTGCTCGAACAAC
TCAGCGCGCTGTACTCGCTATCCTGGCAACAGCCGGGTTTCGCCGTGCTGCTGATAGAGCTGGGCGACTTCAAATTCATC
AACGACGTCTACGGCAACCGCATCGGCGACCTGCTGCTGTGCCATGTCGCGCAGCGGCTGCAGCAGGCGATCGGCCCCCA
TGGACACGCCGCGCGGCTGGGCGGCGTCGAGTTCGCCGCGCTGCTGACCGGCGTGGCCGGCGCAGCCGAAGCCGAAGCCA
TCGCCTGCCGCATGCTGGATGCGGTCAGCGAGCCGTTCCCGGTAGACGAAATGATGCTCAGCGTCACCGCCAGCATCGGC
ATCAGCCTGGGTCCGGAACACGGCGCAGACGGCCGCGAGCTGATGGCGCGGGCCGACATGGCGCTGTACCGGGCCAAGGA
GAAGAGCGCCCGCCGCGTCCAGGTTTACGAAGAAGAGCTGGGACAGCAGATGCGCGAGCGCGTCGAGCTGGAAAAGTCGC
TGCGCCACGCGATCGACCACGGCGAACTGGTGTTGCACTACCAGCCGCAGATCGAGCTCTCCACCCGCCGGGTGGTGGGC
GTGGAGGCGCTGGTGCGCTGGCAGCACCCGCAAAAGGGCATGATCCCGCCGATGCGCTTCATTCCCATCGCCGAGCAATC
CGGCCTGATCCTGCCGCTGGGACGCTGGGTGCTGCGGGAGGCGTGCCGCCAGCTGAAGGTCTGGCAGGACAAGGGACGGG
ACGACCTGCGGATGGCGGTGAACCTCAGCGTCGCCCAGTTCACCGACCACGAGCTGCCCGACTTCGTCGCCGACGTGCTG
AAAGAAACCGGCGTCTCGCCGCGTCACCTGGAACTGGAAATCACCGAATCCTGCACCATGCTGTCGCCGCAGCAGTCGAT
CGGGATGATGGAGCGCTTCCGCGCGATGGGCATACACAGCTCGATAGACGATTTCGGCACCGGCCACTCCGCGCTGGCCT
ACCTGACCCGCTTCCCGGTGGACACGCTGAAGATAGACCAGTCCTTCATCCGCAACATCAGCAATGATGAAAAAGGCACG
GCGCTGTGCGACACCATCGCCTACCTCGCCCACCGCATGGGGCTGCAGGTGGTGGCAGAAGGCGTCGAGACCCAGCAGCA
GCTGACCTTTCTGAGCAGCATCCACGTCGACGTGGTGCAGGGCTACCTGCTATGCAAGCCGTTGCCGGCCGTCGAGGCGG
AAGCCTTCATCCTGCAGCAGACCGGGGCCAGCCCGCAGCCCGGCGTGGAATACTTCTGA

Upstream 100 bases:

>100_bases
CCTCTATGCCGAAGTTGAAGTGTAGACAATCCGCAATACTACTAATGGATTTGAAAACGGCTAGACTGGATGAAGCGGAA
TTACTCCCGGGAGAAACGGA

Downstream 100 bases:

>100_bases
CGCCGGCATTGCCGCGCGCGCCGATACCGTGTATCACTCCGGCATCGACGCCAGGAGCCCCCCATGCCGGACGACCATCA
GCTCGCCGCCCACATCGCGG

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MPVPGDILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAVCRELKLNPRTRDIP
ILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDLARLKKRLSKLVEEKTESLRLSEQRFRALIEQAPEAI
MVYNMDTGRFVDANRQAEKLTGRSLQTLVGISPAALYAPEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPC
EVRLSKLPSETGNLLRVSYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSLSWQQPGFAVLLIELGDFKFI
NDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAALLTGVAGAAEAEAIACRMLDAVSEPFPVDEMMLSVTASIG
ISLGPEHGADGRELMARADMALYRAKEKSARRVQVYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVG
VEALVRWQHPQKGMIPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRDDLRMAVNLSVAQFTDHELPDFVADVL
KETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHSSIDDFGTGHSALAYLTRFPVDTLKIDQSFIRNISNDEKGT
ALCDTIAYLAHRMGLQVVAEGVETQQQLTFLSSIHVDVVQGYLLCKPLPAVEAEAFILQQTGASPQPGVEYF

Sequences:

>Translated_712_residues
MPVPGDILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAVCRELKLNPRTRDIP
ILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDLARLKKRLSKLVEEKTESLRLSEQRFRALIEQAPEAI
MVYNMDTGRFVDANRQAEKLTGRSLQTLVGISPAALYAPEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPC
EVRLSKLPSETGNLLRVSYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSLSWQQPGFAVLLIELGDFKFI
NDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAALLTGVAGAAEAEAIACRMLDAVSEPFPVDEMMLSVTASIG
ISLGPEHGADGRELMARADMALYRAKEKSARRVQVYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVG
VEALVRWQHPQKGMIPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRDDLRMAVNLSVAQFTDHELPDFVADVL
KETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHSSIDDFGTGHSALAYLTRFPVDTLKIDQSFIRNISNDEKGT
ALCDTIAYLAHRMGLQVVAEGVETQQQLTFLSSIHVDVVQGYLLCKPLPAVEAEAFILQQTGASPQPGVEYF
>Mature_711_residues
PVPGDILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAVCRELKLNPRTRDIPI
LFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDLARLKKRLSKLVEEKTESLRLSEQRFRALIEQAPEAIM
VYNMDTGRFVDANRQAEKLTGRSLQTLVGISPAALYAPEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPCE
VRLSKLPSETGNLLRVSYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSLSWQQPGFAVLLIELGDFKFIN
DVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAALLTGVAGAAEAEAIACRMLDAVSEPFPVDEMMLSVTASIGI
SLGPEHGADGRELMARADMALYRAKEKSARRVQVYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVGV
EALVRWQHPQKGMIPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRDDLRMAVNLSVAQFTDHELPDFVADVLK
ETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHSSIDDFGTGHSALAYLTRFPVDTLKIDQSFIRNISNDEKGTA
LCDTIAYLAHRMGLQVVAEGVETQQQLTFLSSIHVDVVQGYLLCKPLPAVEAEAFILQQTGASPQPGVEYF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=443, Percent_Identity=37.2460496613996, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI87081921, Length=528, Percent_Identity=32.1969696969697, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI226510982, Length=447, Percent_Identity=28.1879194630872, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=33.9920948616601, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=37.007874015748, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI1786507, Length=234, Percent_Identity=35.042735042735, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=32.9365079365079, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=32.6359832635983, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=33.8983050847458, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=32.8301886792453, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788849, Length=282, Percent_Identity=30.1418439716312, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=29.5019157088123, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=567, Percent_Identity=24.5149911816578, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=40.6779661016949, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=32.1428571428571, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788394, Length=145, Percent_Identity=33.7931034482759, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=33.7016574585635, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788550, Length=134, Percent_Identity=33.5820895522388, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786599, Length=140, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=34.1968911917098, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789809, Length=116, Percent_Identity=36.2068965517241, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082012, Length=164, Percent_Identity=31.7073170731707, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1790860, Length=124, Percent_Identity=35.4838709677419, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790299, Length=114, Percent_Identity=34.2105263157895, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=174, Percent_Identity=31.6091954022989, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790863, Length=111, Percent_Identity=31.5315315315315, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786784, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787375, Length=112, Percent_Identity=33.9285714285714, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787229, Length=127, Percent_Identity=32.2834645669291, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87081881, Length=271, Percent_Identity=26.5682656826568, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=132, Percent_Identity=29.5454545454545, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 78611; Mature: 78479

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPGDILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPG
CCCCCCEEEECCHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCEEEEECCCCC
MDGLAVCRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNT
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
HLDLARLKKRLSKLVEEKTESLRLSEQRFRALIEQAPEAIMVYNMDTGRFVDANRQAEKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCHHHHH
TGRSLQTLVGISPAALYAPEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPC
CCCHHHHHHCCCHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCH
EVRLSKLPSETGNLLRVSYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSL
HHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
SWQQPGFAVLLIELGDFKFINDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAA
CCCCCCEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
LLTGVAGAAEAEAIACRMLDAVSEPFPVDEMMLSVTASIGISLGPEHGADGRELMARADM
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHH
ALYRAKEKSARRVQVYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCHHHHH
VEALVRWQHPQKGMIPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRDDLRMAV
HHHHHHCCCCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NLSVAQFTDHELPDFVADVLKETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHS
EEEHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
SIDDFGTGHSALAYLTRFPVDTLKIDQSFIRNISNDEKGTALCDTIAYLAHRMGLQVVAE
CHHHCCCCHHHHHHHHHCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GVETQQQLTFLSSIHVDVVQGYLLCKPLPAVEAEAFILQQTGASPQPGVEYF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCCCCC
>Mature Secondary Structure 
PVPGDILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPG
CCCCCEEEECCHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCEEEEECCCCC
MDGLAVCRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNT
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
HLDLARLKKRLSKLVEEKTESLRLSEQRFRALIEQAPEAIMVYNMDTGRFVDANRQAEKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCHHHHH
TGRSLQTLVGISPAALYAPEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPC
CCCHHHHHHCCCHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCH
EVRLSKLPSETGNLLRVSYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSL
HHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
SWQQPGFAVLLIELGDFKFINDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAA
CCCCCCEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
LLTGVAGAAEAEAIACRMLDAVSEPFPVDEMMLSVTASIGISLGPEHGADGRELMARADM
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHH
ALYRAKEKSARRVQVYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCHHHHH
VEALVRWQHPQKGMIPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRDDLRMAV
HHHHHHCCCCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NLSVAQFTDHELPDFVADVLKETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHS
EEEHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
SIDDFGTGHSALAYLTRFPVDTLKIDQSFIRNISNDEKGTALCDTIAYLAHRMGLQVVAE
CHHHCCCCHHHHHHHHHCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GVETQQQLTFLSSIHVDVVQGYLLCKPLPAVEAEAFILQQTGASPQPGVEYF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]