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The map label for this gene is yeaM [H]

Identifier: 34496966

GI number: 34496966

Start: 1613955

End: 1614731

Strand: Direct

Name: yeaM [H]

Synonym: CV_1511

Alternate gene names: 34496966

Gene position: 1613955-1614731 (Clockwise)

Preceding gene: 34496963

Following gene: 34496973

Centisome position: 33.97

GC content: 69.5

Gene sequence:

>777_bases
GTGGCTCTGATTCTGGCTGGACAGGCATTCGACGCCGACGCCTTCGATGCGCCGGTGATAGGCATCGCCGCCGACATGGG
CGTGCACGATTCGGGCCGCCATTGCCATCAGCGGCATCAGCTGCTGTTCGCCGCCGCGGGCTGCATCACCATCGAGCTGG
CGGACACGCTGTGCCTGCTGCCGCCCAGCCGCGCGGCCTGGATCCCGGCCGGCACCGCGCACCGCGCGCTGATGCGCGGC
GTGGTCGCCTACCGCTCGCTGTATTTCGCGCCCGAGCTGCCGTTCCCGGCGCCGCCCTTGCAGGTGCTGGCGGTCAACCC
CTTGCTGCGCGAAGTGATCGAGCGGATGGCTTTCTGGCCGTGGGATGAGCCGGCCGCGCGGCAGCGGAGCCTGCTGGCGG
TATTCGGCGAGGAATTGCTGGCGGCTAAGGGAGAGAACTGGCGATTGCCGTTTCCGAAGGATGCCCGCCTGTCTTCATGG
CTGGACGGGGTGCGGGGCGGCGCGCTGCCGCCGCGGCTGAATCAACTGGCGGACAGGGCGGGGGCGAGCGAACGCACCAT
CAGCCGCATCTTCATCCGCGACACCGGCATGAGCTACCAGGCTTGGCGACAGCAATGGCGCTTGCTGCGGGCGATGGAGC
TGCTGGCGGACGGGATGGGCGCGAGCGAGACGGCGCAGCGGCTGGCCTTCGCCAGCGACAGCGCCTTCATCGCCTTTTTC
CGCCAGCACACCGGCGAGACGCCGGCGCGCTACGCTCAGTCCAGGGTATCCAGGTAG

Upstream 100 bases:

>100_bases
TCATTGTTTTTTTCCTTTCTTGCTTGACGAACGCCAGTCTAGAGAAAGCCGATTTGTCTGATTACAATGATCAGGACTTT
ATCTATTGAAAATCGGACGC

Downstream 100 bases:

>100_bases
TCGCGCTCAGGCCAGCCGGCGCTGCGCTTCCAGGGCGGGACGAAGCCGGCCGGCAGCGGCTGCGGCTCGACGGCGATGGT
TTCGCGCTGGCGGCCGTCGG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MALILAGQAFDADAFDAPVIGIAADMGVHDSGRHCHQRHQLLFAAAGCITIELADTLCLLPPSRAAWIPAGTAHRALMRG
VVAYRSLYFAPELPFPAPPLQVLAVNPLLREVIERMAFWPWDEPAARQRSLLAVFGEELLAAKGENWRLPFPKDARLSSW
LDGVRGGALPPRLNQLADRAGASERTISRIFIRDTGMSYQAWRQQWRLLRAMELLADGMGASETAQRLAFASDSAFIAFF
RQHTGETPARYAQSRVSR

Sequences:

>Translated_258_residues
MALILAGQAFDADAFDAPVIGIAADMGVHDSGRHCHQRHQLLFAAAGCITIELADTLCLLPPSRAAWIPAGTAHRALMRG
VVAYRSLYFAPELPFPAPPLQVLAVNPLLREVIERMAFWPWDEPAARQRSLLAVFGEELLAAKGENWRLPFPKDARLSSW
LDGVRGGALPPRLNQLADRAGASERTISRIFIRDTGMSYQAWRQQWRLLRAMELLADGMGASETAQRLAFASDSAFIAFF
RQHTGETPARYAQSRVSR
>Mature_257_residues
ALILAGQAFDADAFDAPVIGIAADMGVHDSGRHCHQRHQLLFAAAGCITIELADTLCLLPPSRAAWIPAGTAHRALMRGV
VAYRSLYFAPELPFPAPPLQVLAVNPLLREVIERMAFWPWDEPAARQRSLLAVFGEELLAAKGENWRLPFPKDARLSSWL
DGVRGGALPPRLNQLADRAGASERTISRIFIRDTGMSYQAWRQQWRLLRAMELLADGMGASETAQRLAFASDSAFIAFFR
QHTGETPARYAQSRVSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=220, Percent_Identity=29.5454545454545, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28517; Mature: 28386

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALILAGQAFDADAFDAPVIGIAADMGVHDSGRHCHQRHQLLFAAAGCITIELADTLCLL
CEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEECCEEEEC
PPSRAAWIPAGTAHRALMRGVVAYRSLYFAPELPFPAPPLQVLAVNPLLREVIERMAFWP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEECCHHHHHHHHHHHCCC
WDEPAARQRSLLAVFGEELLAAKGENWRLPFPKDARLSSWLDGVRGGALPPRLNQLADRA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
GASERTISRIFIRDTGMSYQAWRQQWRLLRAMELLADGMGASETAQRLAFASDSAFIAFF
CCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
RQHTGETPARYAQSRVSR
HHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
ALILAGQAFDADAFDAPVIGIAADMGVHDSGRHCHQRHQLLFAAAGCITIELADTLCLL
EEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEECCEEEEC
PPSRAAWIPAGTAHRALMRGVVAYRSLYFAPELPFPAPPLQVLAVNPLLREVIERMAFWP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEECCHHHHHHHHHHHCCC
WDEPAARQRSLLAVFGEELLAAKGENWRLPFPKDARLSSWLDGVRGGALPPRLNQLADRA
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHC
GASERTISRIFIRDTGMSYQAWRQQWRLLRAMELLADGMGASETAQRLAFASDSAFIAFF
CCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
RQHTGETPARYAQSRVSR
HHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]