| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is chb [H]
Identifier: 34496948
GI number: 34496948
Start: 1594364
End: 1597000
Strand: Direct
Name: chb [H]
Synonym: CV_1493
Alternate gene names: 34496948
Gene position: 1594364-1597000 (Clockwise)
Preceding gene: 34496947
Following gene: 34496950
Centisome position: 33.56
GC content: 70.65
Gene sequence:
>2637_bases ATGAACGTGAAGCGATTGCTGGGCGCGGCCGTGCTGGCCGCCTTGTCGGCGTGGGCGTGGGCCGCGCCGGATGCGGCGGC GCTGGGGCAGAGCCTGTCGCTGAAAATTGCGGTGGACAGCAACAAGGGCGCGGCCGCCGGCGCGCCGTGCGCCGACCTGG GGGCGGACTGGGCATCCTGCCTGAAGGGGCGGCTGATCCTGGAAAACAAGGGCGGGCAGGCGGTGCCGGCCGGCGGCGGC TGGAACCTGTATCTGCACAGCATCCGCCGCATCCTGAAGCTGGACACGCCGCAGTTCACCCTCCGCCACATCACCGGCGA CCTGTACCAGATCACCCCCACCGCCGCCTTCCAGGGCCTGGCGCCGGGGCAGAAGCTGGAGCTGCCGCTGATAGACGAAT ACTGGATCCTGCAGGAAAGCGACGTGCTGCCGCGCCCCTACGTGACGGTGGACGGCCAGCCGCCGGCGTTGCTGCGGCAT GACAGCAGCGACGAGGCCAGCTATTTGCTGCCCTTGAGCGGCGACAACTGGAAAAACCCGGCCGGCGAGCTGCGGCCGCT GGCCACGCCGGAGCAGCGTTACCGCGCCTTCAGCCTGCGCGGGACGCAGCTGTCGGCGGCGCAGGCGGCCAACCGGACCA TCCCTGCGGTGCGGCGTCAGCAGCTGGGCGGCGGCGAGCTCTTGGTGCGCGGCGTCAGCCTGAACCTGTCCGGCGTCAGC CCGGCGCAGCAGGACGCGCTGGCCGGGCGCGCGGCGCAGCTGGAGCTGCGCGCGGGCGGCACGCGGGTGGAGGGCGGCGT GGTCGGCGCCAAGCTGCCGGCCGACATCGCCGTGCCCGGCGGCTACCGGCTGCTGATCGGCCAGCAGGGCGTGAAGGTGG AAGGCTTCGACGCCGCCGGCGTGTTCTACGGCGTGCAGACGCTGCTGGGCCTGCTGCCGCAGGGCGGCGGCCAGGTGCGC TGGATGACGGTGGAAGATGCGCCGCGCTACGCCCACCGCGGCTTCATGGCCGACCTGGCGCGCAACTTCAAGCAGCCGGC CACGGTGCGCCGCCTGATAGACCAGATGGCCGCCTACAAGCTCAACAAGCTGCACCTGCACCTGTCCGACGACGAGGGCT GGCGCTTGCAGATTCCCGGACTGCCGGAGCTGACCGAGGTCGGCGCGCGCCGCTGCCACGACTTGAGCGAAACCCAGTGC CTGGTGCCGCAGCTGGGCTCCGGGCCGGCCAACCAGTCCGGCGGCGGCTATCTCTCCCGCGCCGACTACATCGCGCTGGT GAGCTATGCTCAGGCCCGTTTCATCGAGGTGATCCCGGAGTTCGACATGCCGGCGCACGCCCGCGCCGCGGTGGTGTCGA TGGAGGCGCGCTACCGCAAGCTGATCGCGCAAGGCCAGCCGCAGGCGGCGTCCGAATACCGGCTGCTGGACCCGCAAGAC CAGTCCAATACGCTGTCGGTGCAGTTCTACGACCGCCGCACCTATCTCAATCCCTGCGTGCCGGGCAGCGGCCGCTTCGT GTCCAAGCTGGTGTCCGAGGTGGCGCAGATGCACCGAGAGGCCGGCCAGCCGCTGCAGACCTGGCACTTCGGCGGCGACG AGGCCAAGAACATCCTGCTGGGCTCCGGCTTCCAGGACGCCAGCGGCAGCGATCCGGGCAAGGGCAAGGTCAATATGGCG CAGCAGGACAAGCCCTGGGGCCGTTCGCCGGCCTGCCAGGCGCAGATCGCCAAGGGTAAATTGAAGAGCGTGGACGAGCT GCCGCTGCGCTTCGCGCGCGAGGCCAGCCGCATCGTCTCCGCCCAGGGCATCCCGACGATGGCGGCCTGGCAGGACGGCG TGGCCGGCTCCGGCGGCGCGTCCGATTTCGCCACCCGCAACACCATGGTCACCGAATGGGACACGCTGTACTGGGGCGCG GCGCAGGCGGCCAGCGGCTACGCCGCCAAGGGCTTCAAGACCGTGCTGGCGCTGCCGGACTACCTGTACTTCGACTTCCC CTACGAGCTGAACCCGCGCGAGCACGGCTATTACTGGGCCTCGCGCGACACCGACAGCTACAAGGTGTTCAGCTTCGCGC CGGACAACCTGCCGCAAAACGCCGAAGTGATGCCGGACCGCCAGGGCCAGCCGTTCGCGGTGACCAGCACCGCCGCGCCG GCGCAATACGCCGGCATCCAGGGCCAGGCCTGGACCGAGGTGATGCGCACCGACGCCGAGTTCGAAGCCATGGTCTACCC GCGCCTGCTGGCGTTGGCCGAGCGCGCCTGGCACAAGGCGGGGTGGGAACGGCCGTACAAGGCGGGCGAAACCTATCAAC TGGGCGTCACCAAACTGGTGGACAAGGCGGCGCTGAACGCCGACTGGCAGCAGTTCGCCGCGGTGCTGGGCTGGCGCGAG GCGCCCAAGCTGGAGCGCGCCGGCATAGGCTACCGGGTGTCGATGCCGGCGGTGCTGCCGGGTTCCGGCGGCGTGTCGGT GACGACCGAATGGCCAGGCGCGCGGCTGCAGTACTCGAGCGACGGCCATGGCTGGCAAACCTACCAGCCGGGCCAGCAGG TGCAGGCGCGCTACTGGCGTGGCATCACCCAGGACGGCCGCCGCGCCGGCAGGGTGGAGACCGTGTCCGGGCAGTGA
Upstream 100 bases:
>100_bases AATACCAATTAAATACCAATTCCGTTCGCATCGCGGGCGAGGGCGGCGGCTCGGGCAGGCAAGCCCGGAATGCCATGGTG GATATGCAAGGGAGTGGACG
Downstream 100 bases:
>100_bases GCGGCAGGGTGCGCGGGCAAGACGCTGGCCCGCGGTTTGAGAGCCGGACGCATCCGGTGAATGCCTGGTGTGCTTGGCAA GAGACGGCGGGCCTGCTGGT
Product: b-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MNVKRLLGAAVLAALSAWAWAAPDAAALGQSLSLKIAVDSNKGAAAGAPCADLGADWASCLKGRLILENKGGQAVPAGGG WNLYLHSIRRILKLDTPQFTLRHITGDLYQITPTAAFQGLAPGQKLELPLIDEYWILQESDVLPRPYVTVDGQPPALLRH DSSDEASYLLPLSGDNWKNPAGELRPLATPEQRYRAFSLRGTQLSAAQAANRTIPAVRRQQLGGGELLVRGVSLNLSGVS PAQQDALAGRAAQLELRAGGTRVEGGVVGAKLPADIAVPGGYRLLIGQQGVKVEGFDAAGVFYGVQTLLGLLPQGGGQVR WMTVEDAPRYAHRGFMADLARNFKQPATVRRLIDQMAAYKLNKLHLHLSDDEGWRLQIPGLPELTEVGARRCHDLSETQC LVPQLGSGPANQSGGGYLSRADYIALVSYAQARFIEVIPEFDMPAHARAAVVSMEARYRKLIAQGQPQAASEYRLLDPQD QSNTLSVQFYDRRTYLNPCVPGSGRFVSKLVSEVAQMHREAGQPLQTWHFGGDEAKNILLGSGFQDASGSDPGKGKVNMA QQDKPWGRSPACQAQIAKGKLKSVDELPLRFAREASRIVSAQGIPTMAAWQDGVAGSGGASDFATRNTMVTEWDTLYWGA AQAASGYAAKGFKTVLALPDYLYFDFPYELNPREHGYYWASRDTDSYKVFSFAPDNLPQNAEVMPDRQGQPFAVTSTAAP AQYAGIQGQAWTEVMRTDAEFEAMVYPRLLALAERAWHKAGWERPYKAGETYQLGVTKLVDKAALNADWQQFAAVLGWRE APKLERAGIGYRVSMPAVLPGSGGVSVTTEWPGARLQYSSDGHGWQTYQPGQQVQARYWRGITQDGRRAGRVETVSGQ
Sequences:
>Translated_878_residues MNVKRLLGAAVLAALSAWAWAAPDAAALGQSLSLKIAVDSNKGAAAGAPCADLGADWASCLKGRLILENKGGQAVPAGGG WNLYLHSIRRILKLDTPQFTLRHITGDLYQITPTAAFQGLAPGQKLELPLIDEYWILQESDVLPRPYVTVDGQPPALLRH DSSDEASYLLPLSGDNWKNPAGELRPLATPEQRYRAFSLRGTQLSAAQAANRTIPAVRRQQLGGGELLVRGVSLNLSGVS PAQQDALAGRAAQLELRAGGTRVEGGVVGAKLPADIAVPGGYRLLIGQQGVKVEGFDAAGVFYGVQTLLGLLPQGGGQVR WMTVEDAPRYAHRGFMADLARNFKQPATVRRLIDQMAAYKLNKLHLHLSDDEGWRLQIPGLPELTEVGARRCHDLSETQC LVPQLGSGPANQSGGGYLSRADYIALVSYAQARFIEVIPEFDMPAHARAAVVSMEARYRKLIAQGQPQAASEYRLLDPQD QSNTLSVQFYDRRTYLNPCVPGSGRFVSKLVSEVAQMHREAGQPLQTWHFGGDEAKNILLGSGFQDASGSDPGKGKVNMA QQDKPWGRSPACQAQIAKGKLKSVDELPLRFAREASRIVSAQGIPTMAAWQDGVAGSGGASDFATRNTMVTEWDTLYWGA AQAASGYAAKGFKTVLALPDYLYFDFPYELNPREHGYYWASRDTDSYKVFSFAPDNLPQNAEVMPDRQGQPFAVTSTAAP AQYAGIQGQAWTEVMRTDAEFEAMVYPRLLALAERAWHKAGWERPYKAGETYQLGVTKLVDKAALNADWQQFAAVLGWRE APKLERAGIGYRVSMPAVLPGSGGVSVTTEWPGARLQYSSDGHGWQTYQPGQQVQARYWRGITQDGRRAGRVETVSGQ >Mature_878_residues MNVKRLLGAAVLAALSAWAWAAPDAAALGQSLSLKIAVDSNKGAAAGAPCADLGADWASCLKGRLILENKGGQAVPAGGG WNLYLHSIRRILKLDTPQFTLRHITGDLYQITPTAAFQGLAPGQKLELPLIDEYWILQESDVLPRPYVTVDGQPPALLRH DSSDEASYLLPLSGDNWKNPAGELRPLATPEQRYRAFSLRGTQLSAAQAANRTIPAVRRQQLGGGELLVRGVSLNLSGVS PAQQDALAGRAAQLELRAGGTRVEGGVVGAKLPADIAVPGGYRLLIGQQGVKVEGFDAAGVFYGVQTLLGLLPQGGGQVR WMTVEDAPRYAHRGFMADLARNFKQPATVRRLIDQMAAYKLNKLHLHLSDDEGWRLQIPGLPELTEVGARRCHDLSETQC LVPQLGSGPANQSGGGYLSRADYIALVSYAQARFIEVIPEFDMPAHARAAVVSMEARYRKLIAQGQPQAASEYRLLDPQD QSNTLSVQFYDRRTYLNPCVPGSGRFVSKLVSEVAQMHREAGQPLQTWHFGGDEAKNILLGSGFQDASGSDPGKGKVNMA QQDKPWGRSPACQAQIAKGKLKSVDELPLRFAREASRIVSAQGIPTMAAWQDGVAGSGGASDFATRNTMVTEWDTLYWGA AQAASGYAAKGFKTVLALPDYLYFDFPYELNPREHGYYWASRDTDSYKVFSFAPDNLPQNAEVMPDRQGQPFAVTSTAAP AQYAGIQGQAWTEVMRTDAEFEAMVYPRLLALAERAWHKAGWERPYKAGETYQLGVTKLVDKAALNADWQQFAAVLGWRE APKLERAGIGYRVSMPAVLPGSGGVSVTTEWPGARLQYSSDGHGWQTYQPGQQVQARYWRGITQDGRRAGRVETVSGQ
Specific function: Digests the beta-1,4-glycosidic bonds in N- acetylglucosamine (GlcNAc) oligomers (mainly dimers) [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=266, Percent_Identity=25.187969924812, Blast_Score=80, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17569815, Length=298, Percent_Identity=25.1677852348993, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI17933586, Length=294, Percent_Identity=25.5102040816327, Blast_Score=81, Evalue=4e-15, Organism=Drosophila melanogaster, GI24657468, Length=125, Percent_Identity=32.8, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI17647501, Length=125, Percent_Identity=32.8, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI281365639, Length=125, Percent_Identity=32.8, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24657474, Length=125, Percent_Identity=32.8, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 95256; Mature: 95256
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVKRLLGAAVLAALSAWAWAAPDAAALGQSLSLKIAVDSNKGAAAGAPCADLGADWASC CCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEECCCCCCCCCCHHHHCHHHHHH LKGRLILENKGGQAVPAGGGWNLYLHSIRRILKLDTPQFTLRHITGDLYQITPTAAFQGL HCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCEEEECHHHHHCCC APGQKLELPLIDEYWILQESDVLPRPYVTVDGQPPALLRHDSSDEASYLLPLSGDNWKNP CCCCEECCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCEEEEEECCCCCCCC AGELRPLATPEQRYRAFSLRGTQLSAAQAANRTIPAVRRQQLGGGELLVRGVSLNLSGVS CCCCCCCCCHHHHHEEEEECCCEEHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEECCCC PAQQDALAGRAAQLELRAGGTRVEGGVVGAKLPADIAVPGGYRLLIGQQGVKVEGFDAAG CHHHHHHCCCCEEEEEECCCEEECCCEEECCCCCCEECCCCEEEEEECCCCEEECCCCHH VFYGVQTLLGLLPQGGGQVRWMTVEDAPRYAHRGFMADLARNFKQPATVRRLIDQMAAYK HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHE LNKLHLHLSDDEGWRLQIPGLPELTEVGARRCHDLSETQCLVPQLGSGPANQSGGGYLSR EEEEEEEECCCCCCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCH ADYIALVSYAQARFIEVIPEFDMPAHARAAVVSMEARYRKLIAQGQPQAASEYRLLDPQD HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC QSNTLSVQFYDRRTYLNPCVPGSGRFVSKLVSEVAQMHREAGQPLQTWHFGGDEAKNILL CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCEEEE GSGFQDASGSDPGKGKVNMAQQDKPWGRSPACQAQIAKGKLKSVDELPLRFAREASRIVS ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHCCHHHHHHHHHHHHHHHHH AQGIPTMAAWQDGVAGSGGASDFATRNTMVTEWDTLYWGAAQAASGYAAKGFKTVLALPD CCCCCCHHHHCCCCCCCCCCCCHHCCCCEEEECCHHEECCHHHCCCCCCCCHHHEEECCC YLYFDFPYELNPREHGYYWASRDTDSYKVFSFAPDNLPQNAEVMPDRQGQPFAVTSTAAP EEEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC AQYAGIQGQAWTEVMRTDAEFEAMVYPRLLALAERAWHKAGWERPYKAGETYQLGVTKLV HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH DKAALNADWQQFAAVLGWREAPKLERAGIGYRVSMPAVLPGSGGVSVTTEWPGARLQYSS HHHHCCCCHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCEEEEECCCCCEEEECC DGHGWQTYQPGQQVQARYWRGITQDGRRAGRVETVSGQ CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCEEECCCC >Mature Secondary Structure MNVKRLLGAAVLAALSAWAWAAPDAAALGQSLSLKIAVDSNKGAAAGAPCADLGADWASC CCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEECCCCCCCCCCHHHHCHHHHHH LKGRLILENKGGQAVPAGGGWNLYLHSIRRILKLDTPQFTLRHITGDLYQITPTAAFQGL HCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCEEEECHHHHHCCC APGQKLELPLIDEYWILQESDVLPRPYVTVDGQPPALLRHDSSDEASYLLPLSGDNWKNP CCCCEECCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCEEEEEECCCCCCCC AGELRPLATPEQRYRAFSLRGTQLSAAQAANRTIPAVRRQQLGGGELLVRGVSLNLSGVS CCCCCCCCCHHHHHEEEEECCCEEHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEECCCC PAQQDALAGRAAQLELRAGGTRVEGGVVGAKLPADIAVPGGYRLLIGQQGVKVEGFDAAG CHHHHHHCCCCEEEEEECCCEEECCCEEECCCCCCEECCCCEEEEEECCCCEEECCCCHH VFYGVQTLLGLLPQGGGQVRWMTVEDAPRYAHRGFMADLARNFKQPATVRRLIDQMAAYK HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHE LNKLHLHLSDDEGWRLQIPGLPELTEVGARRCHDLSETQCLVPQLGSGPANQSGGGYLSR EEEEEEEECCCCCCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCH ADYIALVSYAQARFIEVIPEFDMPAHARAAVVSMEARYRKLIAQGQPQAASEYRLLDPQD HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC QSNTLSVQFYDRRTYLNPCVPGSGRFVSKLVSEVAQMHREAGQPLQTWHFGGDEAKNILL CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHCEEEE GSGFQDASGSDPGKGKVNMAQQDKPWGRSPACQAQIAKGKLKSVDELPLRFAREASRIVS ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHCCHHHHHHHHHHHHHHHHH AQGIPTMAAWQDGVAGSGGASDFATRNTMVTEWDTLYWGAAQAASGYAAKGFKTVLALPD CCCCCCHHHHCCCCCCCCCCCCHHCCCCEEEECCHHEECCHHHCCCCCCCCHHHEEECCC YLYFDFPYELNPREHGYYWASRDTDSYKVFSFAPDNLPQNAEVMPDRQGQPFAVTSTAAP EEEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC AQYAGIQGQAWTEVMRTDAEFEAMVYPRLLALAERAWHKAGWERPYKAGETYQLGVTKLV HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH DKAALNADWQQFAAVLGWREAPKLERAGIGYRVSMPAVLPGSGGVSVTTEWPGARLQYSS HHHHCCCCHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCEEEEECCCCCEEEECC DGHGWQTYQPGQQVQARYWRGITQDGRRAGRVETVSGQ CCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8621090; 8673609 [H]