| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496925
Identifier: 34496925
GI number: 34496925
Start: 1564087
End: 1565925
Strand: Reverse
Name: 34496925
Synonym: CV_1470
Alternate gene names: NA
Gene position: 1565925-1564087 (Counterclockwise)
Preceding gene: 34496926
Following gene: 34496924
Centisome position: 32.96
GC content: 63.78
Gene sequence:
>1839_bases TTGAGCGGTAATTTTGTCGACAAAAATGTCGGCAATGGCAAAACGATAACGCTGAATTCAACCCCGACGCTGGCAGGCGC CAACGCCGGCAACTATTTGCTGGCCCCCTATGTCGTCAACGCTTTCAGCGCCAACATCACCCCGCTGGCCATCACGGTTA GCGCCACCGGGCAGAACAAGACCTATGACGGCACCGTCCACGATACCGTGACGCTGTCCAGCAGCGGCGTGCTGGCCGGC GATACCGTCAACTTCTCCGACACCAGCGCCACCTTCGCCAACAAGAACGTCGGCAACGCCAAAACCGTCTCGGTATCGGG CATCTCCGCCAGCGGCGCCGACGCCGGCAACTACACCATCAATAGCACCACCACCACCAGCGCCAACATCACGCCGCTGG CCATTACTGTTAGCGCCACCGGACAGAACAAGACCTACGACGCGACCGTCAACGACGCCGTGACGCTGTCCAGCAGCGGC GTGCTGGCCGGCGATGCCGTCAACTTCTCCGACACCAGCGCCACCTTCGCCAACAAGAACGTCGGCAACGCCAAAACCGT CTCGGTATCGGGCATATCCGCCAGCGGCGCCGACGCCGGCAACTACACGCTCAACAACAGCACCGCCACCACCAGCGCCA ACATCACCCCGCTGGCCATCACCGTTAACGCCACCGGGCAGAACAAGACTTATGACGCCACCGTCAACGCCAGCGTCACG CTGAGCAGCAGCGGCGTGCTGGCCGGCGATACCGTCAACTTCGCCGATACCAGCGCCGCCTTCAACAACAAGAACGTCGG CAATGCCAAGCCGGTATCGGTGGCCGGCATCTCCGCCAGCGGCGCCGACGCCGGCAACTACACGCTCAACAACAACACCG CCACCACCAGCGCCAACATCACCCCGCTGGCCATCACCGTTAACGCCGCCGGGCAGAACAAGACCTATGACGGCACCGTC AACGATACCGTGACGCTGTCCAGTAGCGGCGTGCTGGCCGGCGATACCGTCAACTTCTCCGACACCAGCGCCACCTTCGC CAACAAGAACGTCGGCAACGCCAAAACCGTCTCGGTATCGGGCATCTCCGCCAGCGGCGCCGACGCCGGCAACTACACCA TCAATAGCACCGCCACCACCAGCGCCAACATCGCCCCGCTGGCCATTACCGTCTCTGCCACCGGGCAGAACAAGACTTAT GACGCCACCGTCAACGGCGCCGTGACGCTGTCCAGCAGCGGCGTGCTGGCCGGCGATGCCGTCAGCTTCTCCGACACCAG CGCCACCTTCAACAACAAGAACATCGGCACCGCCAAGCCGGTGTCGGTAACTGGCATCTCCGCCAGCGGCGCCGACGCCG GCAACTACACGCTCAACAACAGCACCGCCACCACCAGCGCCAACATCACGCCTCTGGCGCTCAGCGTCAACGGCGCGGGC GCCTTCGACAAACTGTATGACGGCACCAATGCCGCCACCTTGTATGGCAGCATCGGCACCCTCGGCAGCGACGCCGTGAC GTTGAGCGGCAATGGCACATTCGCCAGCGCCCACGTCGCCCATGACGGCAGCGGCAACGTCATCGCTCAGAGCGTCGCCG CCAACTACGCCATCAGCGGCGCGGATGCCGGCAATTACACATTGACGCAGCCTACCGGGCTGGCCGCCGCCATCAGGCCG GTTACCGTCACCGCCAATATCAGCGCCGCCAATAAAACCTATGACGGCACCACCAGCGCGACCCTGACCAGTCAGGCACC ATCAACGGCGAAACCCTGGCCCTCAACGCCGCCGCCGCCAACTTCGACACCAAGGACGCCGGCACCGGCAAGACCGTGA
Upstream 100 bases:
>100_bases CTCCGCCAGCAACAAGGTCTATGACGGCACCGCCGCGGCCAGCGGCATCACCGCCAACCTGGCGGGGATCCTACCCGGAC AAACCGTCGGCCTCTCTTCC
Downstream 100 bases:
>100_bases CAGCCAGCGGCCTGACGCTGAGCAATGGCACGGGCCTCGCCAGCGACTACGCGCTGCAAAGCAACACCGCAGCCACCACC GCCAACATCAATCAGGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Large Exoprotein Involved In Heme Utilization Or Adhesion; The GLUG Motif Domain Protein; Alpha Beta-Propellor Repeat-Containing Integrin; Filamentous Hemagglutinin Outer Membrane Protein; Hemagglutination Activity Domain-Containing Protein; Filamentous Haemagglutinin-Like; Filamentous Haemagglutinin-Like Protein; Large Exoproteins Involved In Heme Utilization Or Adhesion; Heme/Hemopexin Utilization Protein HuxA; Ig Family Protein; Hemagglutination Activity Domain Protein
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MSGNFVDKNVGNGKTITLNSTPTLAGANAGNYLLAPYVVNAFSANITPLAITVSATGQNKTYDGTVHDTVTLSSSGVLAG DTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTTTTSANITPLAITVSATGQNKTYDATVNDAVTLSSSG VLAGDAVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTLNNSTATTSANITPLAITVNATGQNKTYDATVNASVT LSSSGVLAGDTVNFADTSAAFNNKNVGNAKPVSVAGISASGADAGNYTLNNNTATTSANITPLAITVNAAGQNKTYDGTV NDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTATTSANIAPLAITVSATGQNKTY DATVNGAVTLSSSGVLAGDAVSFSDTSATFNNKNIGTAKPVSVTGISASGADAGNYTLNNSTATTSANITPLALSVNGAG AFDKLYDGTNAATLYGSIGTLGSDAVTLSGNGTFASAHVAHDGSGNVIAQSVAANYAISGADAGNYTLTQPTGLAAAIRP VTVTANISAANKTYDGTTSATLTSQAPSTAKPWPSTPPPPTSTPRTPAPARP
Sequences:
>Translated_612_residues MSGNFVDKNVGNGKTITLNSTPTLAGANAGNYLLAPYVVNAFSANITPLAITVSATGQNKTYDGTVHDTVTLSSSGVLAG DTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTTTTSANITPLAITVSATGQNKTYDATVNDAVTLSSSG VLAGDAVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTLNNSTATTSANITPLAITVNATGQNKTYDATVNASVT LSSSGVLAGDTVNFADTSAAFNNKNVGNAKPVSVAGISASGADAGNYTLNNNTATTSANITPLAITVNAAGQNKTYDGTV NDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTATTSANIAPLAITVSATGQNKTY DATVNGAVTLSSSGVLAGDAVSFSDTSATFNNKNIGTAKPVSVTGISASGADAGNYTLNNSTATTSANITPLALSVNGAG AFDKLYDGTNAATLYGSIGTLGSDAVTLSGNGTFASAHVAHDGSGNVIAQSVAANYAISGADAGNYTLTQPTGLAAAIRP VTVTANISAANKTYDGTTSATLTSQAPSTAKPWPSTPPPPTSTPRTPAPARP >Mature_611_residues SGNFVDKNVGNGKTITLNSTPTLAGANAGNYLLAPYVVNAFSANITPLAITVSATGQNKTYDGTVHDTVTLSSSGVLAGD TVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTTTTSANITPLAITVSATGQNKTYDATVNDAVTLSSSGV LAGDAVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTLNNSTATTSANITPLAITVNATGQNKTYDATVNASVTL SSSGVLAGDTVNFADTSAAFNNKNVGNAKPVSVAGISASGADAGNYTLNNNTATTSANITPLAITVNAAGQNKTYDGTVN DTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTINSTATTSANIAPLAITVSATGQNKTYD ATVNGAVTLSSSGVLAGDAVSFSDTSATFNNKNIGTAKPVSVTGISASGADAGNYTLNNSTATTSANITPLALSVNGAGA FDKLYDGTNAATLYGSIGTLGSDAVTLSGNGTFASAHVAHDGSGNVIAQSVAANYAISGADAGNYTLTQPTGLAAAIRPV TVTANISAANKTYDGTTSATLTSQAPSTAKPWPSTPPPPTSTPRTPAPARP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60055; Mature: 59924
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGNFVDKNVGNGKTITLNSTPTLAGANAGNYLLAPYVVNAFSANITPLAITVSATGQNK CCCCEECCCCCCCCEEEECCCCCEECCCCCCEEEECEEEEHHCCCCEEEEEEEEECCCCC TYDGTVHDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTI EECCEEEEEEEECCCCEEECCEECCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCEEE NSTTTTSANITPLAITVSATGQNKTYDATVNDAVTLSSSGVLAGDAVNFSDTSATFANKN CCEEECCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCCEEEECEECCCCCCCEECCCC VGNAKTVSVSGISASGADAGNYTLNNSTATTSANITPLAITVNATGQNKTYDATVNASVT CCCEEEEEEECCCCCCCCCCCEEECCCCEECCCCCEEEEEEEECCCCCCEEEEEEEEEEE LSSSGVLAGDTVNFADTSAAFNNKNVGNAKPVSVAGISASGADAGNYTLNNNTATTSANI EECCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEECCC TPLAITVNAAGQNKTYDGTVNDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVS EEEEEEEECCCCCCEECCCCCCEEEEECCCEEECCEECCCCCCCEECCCCCCCEEEEEEE GISASGADAGNYTINSTATTSANIAPLAITVSATGQNKTYDATVNGAVTLSSSGVLAGDA CCCCCCCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEECEEEEEECCCEEECCE VSFSDTSATFNNKNIGTAKPVSVTGISASGADAGNYTLNNSTATTSANITPLALSVNGAG EEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCCEEECCCCEECCCCCEEEEEEECCCC AFDKLYDGTNAATLYGSIGTLGSDAVTLSGNGTFASAHVAHDGSGNVIAQSVAANYAISG CHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEC ADAGNYTLTQPTGLAAAIRPVTVTANISAANKTYDGTTSATLTSQAPSTAKPWPSTPPPP CCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC TSTPRTPAPARP CCCCCCCCCCCC >Mature Secondary Structure SGNFVDKNVGNGKTITLNSTPTLAGANAGNYLLAPYVVNAFSANITPLAITVSATGQNK CCCEECCCCCCCCEEEECCCCCEECCCCCCEEEECEEEEHHCCCCEEEEEEEEECCCCC TYDGTVHDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVSGISASGADAGNYTI EECCEEEEEEEECCCCEEECCEECCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCEEE NSTTTTSANITPLAITVSATGQNKTYDATVNDAVTLSSSGVLAGDAVNFSDTSATFANKN CCEEECCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCCEEEECEECCCCCCCEECCCC VGNAKTVSVSGISASGADAGNYTLNNSTATTSANITPLAITVNATGQNKTYDATVNASVT CCCEEEEEEECCCCCCCCCCCEEECCCCEECCCCCEEEEEEEECCCCCCEEEEEEEEEEE LSSSGVLAGDTVNFADTSAAFNNKNVGNAKPVSVAGISASGADAGNYTLNNNTATTSANI EECCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEECCC TPLAITVNAAGQNKTYDGTVNDTVTLSSSGVLAGDTVNFSDTSATFANKNVGNAKTVSVS EEEEEEEECCCCCCEECCCCCCEEEEECCCEEECCEECCCCCCCEECCCCCCCEEEEEEE GISASGADAGNYTINSTATTSANIAPLAITVSATGQNKTYDATVNGAVTLSSSGVLAGDA CCCCCCCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEECEEEEEECCCEEECCE VSFSDTSATFNNKNIGTAKPVSVTGISASGADAGNYTLNNSTATTSANITPLALSVNGAG EEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCCEEECCCCEECCCCCEEEEEEECCCC AFDKLYDGTNAATLYGSIGTLGSDAVTLSGNGTFASAHVAHDGSGNVIAQSVAANYAISG CHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEC ADAGNYTLTQPTGLAAAIRPVTVTANISAANKTYDGTTSATLTSQAPSTAKPWPSTPPPP CCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC TSTPRTPAPARP CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA