Click here to switch to the map view.

The map label for this gene is rhsE [H]

Identifier: 34496884

GI number: 34496884

Start: 1505948

End: 1507177

Strand: Reverse

Name: rhsE [H]

Synonym: CV_1429

Alternate gene names: 34496884

Gene position: 1507177-1505948 (Counterclockwise)

Preceding gene: 34496885

Following gene: 34496883

Centisome position: 31.72

GC content: 56.67

Gene sequence:

>1230_bases
GTGGAAAGCTTCCGCTTCGACCCGGCCGGCAACCTGTTGGACAACGCCCCAGCCCCCGACGGCCATCAAAACGACAGCCT
GCTCGGCAACCTGTTGAGCCAGTACGCCGGCCGCCACTACCGCTACGACAGCCGCGGCAATCTGGTGGAGAAACGGGTCA
ACGGCAGCCTCACCCGGCTGGAATGGGACAGCCACAGCCGCCTGTCCCGCCTCATCGCGCCGGACGGCCAACGCACCGAC
TACCACTACGACCCGCTTGGCCGCCGCATCGCCAAGATCAGCCAGGGCCAGGCCACGCTGTACGGCTGGGACGGCGACGT
GCTGGCCTTTGAAACCCGCGATGAGGAAGCGGTGCACTATCTGTTCGAGCCGGACAGCTTCGTGCCGCTGGCCCAGGTGC
ACACCGACGCCATCCGCGGCGTCAAGGTGCCGGCCTGGAGCCAGCACCACCCCTACGACCCGGACAAGGATCCGCTACGC
CAGCCCGCGCCGGAACCCGAAGCCCCTAAGGCGGTGTACTACTATCACACCGACCACCTGGGCACCCCGCAAGCGCTGAC
CGACGAACAAGGCCTGCTCGCGCTGGAAATGGACTACCAGGCCTGGGGCCAGGCGCGCGAAGTCATCGCCGACGCCGCAG
GCAAAGCCGGCATCCGCAACCCCTTCCGCTTCCAGGGGCAGTATCATGACGACGAGTCCGGGCTGCACTACAACCGCCAT
CGCTACTATGATCCGGAGATCGGGCGATTTATTTCGCGGGATCCGATTGGGCTAAAAGGGGGATATAATTTATTTGCATA
TGCGCCCAATACCATAGAATGGGTCGACCCATTCGGCTTAACCAAGTTACGAGAAACAGACCCGAAAGCAAGATCGCTAT
CGAATGTACAAACACGTTGTTGGTATTTACGAGAAGAAAGTAAAATTGGGTATCAAATAGATTGTACAAAACCAATTAAG
CAGCAGGCCCGCCAAGCAGCAAGACTTAGAAATGAGGCTAGAATTCGTGCACGATTACTTATGGCCGATCGTGAGAAAGC
AATAGCGCTGCATCAATCCGATCCAAATTTAACATTCAAAGAGCTTATGGCCCTGAAAGAAAACAAAAAGGGCCTCACAG
GAAAAGATGCTTACCAAGATATTGTTGACTCAGCATCCAAATCAAGGCAAAGCGTTAATAAAGCACTCCTTGAAGGAGTG
GATTGTGATAAAGTATTGGAAGGAATATAA

Upstream 100 bases:

>100_bases
CGCCGGCCAACTCGTCGGCATCGCCGACAATCGCCACGGCCAGCTGAGTTACCGCTATGACCCGGTCGGCCGCCTGCTGG
AGGCCGCCACCCCCAAAGGC

Downstream 100 bases:

>100_bases
ATGCAAGCGAAATTTAAAAAAATCGGCAACCGATGGTATGCTTTTCCCAAGTCCGACGCTCACCCCGAAGAGTTAAAGAG
AATGATTCTAGAGACTGGTA

Product: Rhs family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MESFRFDPAGNLLDNAPAPDGHQNDSLLGNLLSQYAGRHYRYDSRGNLVEKRVNGSLTRLEWDSHSRLSRLIAPDGQRTD
YHYDPLGRRIAKISQGQATLYGWDGDVLAFETRDEEAVHYLFEPDSFVPLAQVHTDAIRGVKVPAWSQHHPYDPDKDPLR
QPAPEPEAPKAVYYYHTDHLGTPQALTDEQGLLALEMDYQAWGQAREVIADAAGKAGIRNPFRFQGQYHDDESGLHYNRH
RYYDPEIGRFISRDPIGLKGGYNLFAYAPNTIEWVDPFGLTKLRETDPKARSLSNVQTRCWYLREESKIGYQIDCTKPIK
QQARQAARLRNEARIRARLLMADREKAIALHQSDPNLTFKELMALKENKKGLTGKDAYQDIVDSASKSRQSVNKALLEGV
DCDKVLEGI

Sequences:

>Translated_409_residues
MESFRFDPAGNLLDNAPAPDGHQNDSLLGNLLSQYAGRHYRYDSRGNLVEKRVNGSLTRLEWDSHSRLSRLIAPDGQRTD
YHYDPLGRRIAKISQGQATLYGWDGDVLAFETRDEEAVHYLFEPDSFVPLAQVHTDAIRGVKVPAWSQHHPYDPDKDPLR
QPAPEPEAPKAVYYYHTDHLGTPQALTDEQGLLALEMDYQAWGQAREVIADAAGKAGIRNPFRFQGQYHDDESGLHYNRH
RYYDPEIGRFISRDPIGLKGGYNLFAYAPNTIEWVDPFGLTKLRETDPKARSLSNVQTRCWYLREESKIGYQIDCTKPIK
QQARQAARLRNEARIRARLLMADREKAIALHQSDPNLTFKELMALKENKKGLTGKDAYQDIVDSASKSRQSVNKALLEGV
DCDKVLEGI
>Mature_409_residues
MESFRFDPAGNLLDNAPAPDGHQNDSLLGNLLSQYAGRHYRYDSRGNLVEKRVNGSLTRLEWDSHSRLSRLIAPDGQRTD
YHYDPLGRRIAKISQGQATLYGWDGDVLAFETRDEEAVHYLFEPDSFVPLAQVHTDAIRGVKVPAWSQHHPYDPDKDPLR
QPAPEPEAPKAVYYYHTDHLGTPQALTDEQGLLALEMDYQAWGQAREVIADAAGKAGIRNPFRFQGQYHDDESGLHYNRH
RYYDPEIGRFISRDPIGLKGGYNLFAYAPNTIEWVDPFGLTKLRETDPKARSLSNVQTRCWYLREESKIGYQIDCTKPIK
QQARQAARLRNEARIRARLLMADREKAIALHQSDPNLTFKELMALKENKKGLTGKDAYQDIVDSASKSRQSVNKALLEGV
DCDKVLEGI

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=355, Percent_Identity=31.5492957746479, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1786917, Length=132, Percent_Identity=41.6666666666667, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI48994942, Length=139, Percent_Identity=41.0071942446043, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790020, Length=124, Percent_Identity=41.1290322580645, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 46506; Mature: 46506

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESFRFDPAGNLLDNAPAPDGHQNDSLLGNLLSQYAGRHYRYDSRGNLVEKRVNGSLTRL
CCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHCCCCEEEE
EWDSHSRLSRLIAPDGQRTDYHYDPLGRRIAKISQGQATLYGWDGDVLAFETRDEEAVHY
ECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEEE
LFEPDSFVPLAQVHTDAIRGVKVPAWSQHHPYDPDKDPLRQPAPEPEAPKAVYYYHTDHL
EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GTPQALTDEQGLLALEMDYQAWGQAREVIADAAGKAGIRNPFRFQGQYHDDESGLHYNRH
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC
RYYDPEIGRFISRDPIGLKGGYNLFAYAPNTIEWVDPFGLTKLRETDPKARSLSNVQTRC
CCCCHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHCCCCHHHHHHHHHHHH
WYLREESKIGYQIDCTKPIKQQARQAARLRNEARIRARLLMADREKAIALHQSDPNLTFK
EEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
ELMALKENKKGLTGKDAYQDIVDSASKSRQSVNKALLEGVDCDKVLEGI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MESFRFDPAGNLLDNAPAPDGHQNDSLLGNLLSQYAGRHYRYDSRGNLVEKRVNGSLTRL
CCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHCCCCEEEE
EWDSHSRLSRLIAPDGQRTDYHYDPLGRRIAKISQGQATLYGWDGDVLAFETRDEEAVHY
ECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEEEE
LFEPDSFVPLAQVHTDAIRGVKVPAWSQHHPYDPDKDPLRQPAPEPEAPKAVYYYHTDHL
EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GTPQALTDEQGLLALEMDYQAWGQAREVIADAAGKAGIRNPFRFQGQYHDDESGLHYNRH
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC
RYYDPEIGRFISRDPIGLKGGYNLFAYAPNTIEWVDPFGLTKLRETDPKARSLSNVQTRC
CCCCHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHCCCCHHHHHHHHHHHH
WYLREESKIGYQIDCTKPIKQQARQAARLRNEARIRARLLMADREKAIALHQSDPNLTFK
EEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
ELMALKENKKGLTGKDAYQDIVDSASKSRQSVNKALLEGVDCDKVLEGI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1766878; 7934896 [H]