| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is apeE [H]
Identifier: 34496453
GI number: 34496453
Start: 1037150
End: 1039288
Strand: Reverse
Name: apeE [H]
Synonym: CV_0998
Alternate gene names: 34496453
Gene position: 1039288-1037150 (Counterclockwise)
Preceding gene: 34496459
Following gene: 34496449
Centisome position: 21.87
GC content: 65.45
Gene sequence:
>2139_bases ATGCGCAACCGCTTGACCACTCTCGCCCTGGCCACCGCGCTGGCACTGCCGGCCGCCGCCCACGCCTACAGCAACATCTA CTTCTTCGGTGACAGTCTGACCGATATTGGCGCCTTCGGCGGCCTGGGAGGGTTGCCGTCCACCGCGCGCTGGACGCTGG GCTATGGTCCCGGCTGGTCGCAAGACTTCGGCGGCCGCTTCGGCATCGCCGTCACCCCGAACAATCCCAACAACAGCACC ATAACGGCAAAGAACGGCAACAACTACGCACAGGGCGACGCGCGCGCGCAGCCGGCCAATCCGGTCAACACCAACCCGGA ATCGCCTACGGGCAGCCCCGTCCCCGGCGCGATCAACGTATCCGACCTGGTGGACCTGACCGTCAATGGCGCCGTCACCA ACCCCGGCCAGATCTCGACTTACCTGGCCCAAAGCGGGGGCAAGGCCGATCCCAACGCGCTGTACTCGATATGGATCGGC GGCAACGATGTAATCAATTCGCTGACAGTAGGTCAGACCGCCATGGCCACCGCGCTCGCGGGTGGCGCCACGCAGGCCCA AGCGCAGACGGCTGCCTCAAACGCTATCCAAAGCTACCTGACGACCTCGGCAACCAACACGGTACAAGCTGTCGGAGCGC TGAAAGCCCGGGGCGCCAATACCATTTTGCTGCCGAATCTGCCCAATATCGCCACCGCGCCGCTGGCGGTGTTTGCCACC ATCAATGCGAAATACTCCACCCCGGCAGATGCTGCTAATCTGGCCACCGCCTGGGGGGCGGCCTGGAATGTCCTGAGCGC ATCGCCGACCGCCACCTCGGCCGCGCTGGTGCAGCAAGCGCTTGCGGCTGCGGAAACCAGCGTGGGTCTCTCCTCCGGCA CGCTGTCCAACATCTACAGCACTCAGGTGCAGCCCACCCTCCAATCCGGCTCTTCCGGCTACAACCAACTGGTCGACATG CAACTGGTCGGCGCAGGCCTGAGTCACGGCATCATCCGCGCCAACATCAACGGCTTGTTCAATGAAATTCTGGCCAATCC GACTGCCTACGGTCTCACCAATACTTCCGGCTCCGCCTGCCCACAGTCCGCCCTGTATTGCAATGCGCAGGTCGTCGCCG GCATCAATTACCTATTCACTGATCCGCTGCATCCGACACCGCAGGCCTACAAGATCGTCTCCGACTACTTTTACGGCCTG ACCCAAGCCCCCTACTTCGCCGCCGCCATTCCGGAGTCGTCGCTGAACAACGCCCGCCAGTTGGGCGGCGCGCTGGACGC GCGCTACCAGGCCATCCGCTCGCAGAAGCGCGCGGTCGGCGAAGTCAGCGCCTTCGTCAACGGCGCCTTCGGCGACGGCA AGGCCAGCTACGGCGGCTTGTCGGCCAAGCCGAAGGGCCAGCTGTACACGGTGGGTCTGGACTTCCAGGCCACGCCGGCG CTGAGCGTCGGCCTGGCGATGTCCCGCCAGCAGGGCAAGACCGATGTCGACAGCGTGGGCACGCCCGGCAGCATCGACGA CCGCACCACGCTGATGAGCGGCTTCGCCAGCTACAACCAGAACAAATTCTGGGTGGACGGCGACCTGCACATCGGCTCCG GCGATCTCGACACCCACCGCAACGTGACCTTGGGGCCGACAACGGTGGGCATCGACGGCAAAACCCGCGCCACCCAGTTC GGCCTGCGCGCCGCCGGCGGCTACCGGATGCAGTACCGCGGCGTCACCACCGGACCGGTGGCGGGCCTGGACTACGCCTA CGCCAAGATCGCCGGCTTCGCCGAGCAGGGCGGCACCAGCAGCAGCATGAGTTTCTCCAGCCAGAACGTCAGCTCGCTGG TGGGTCGCGTCGGCTGGCAGCTGGACGCCGAAGTCGGCAGGTTCAGCCCCTATGCCAAGGTCAGCTTCGCCCACGAGTTC AAGCAGAACGACCGCAGCGTGACCGCCGGCCTCGCCACCACCGTCGGCGACTGGACCACCAACCTGGGCAAGCCGGACGC CAACTGGATGGAATGGACCGCCGGCGTCAGCGCCAACTTCAACAAGACCATCACCGCCTTCGGCCAACTGACCGCCACCA GCGGCAAGAACGGCGGCAACCAGACCGGCGGCAACATCGGCGTCGCCATGTCGTTCTGA
Upstream 100 bases:
>100_bases ATTGACAAGCGGGGAGCATATTCGAATAATCGTTTGATTAGAGCTTAGACTCTTGGCACTAAAAACAGAAGACAACACCC CGAACGAAAAGAGGAACATG
Downstream 100 bases:
>100_bases TCGTTTCGCCCAAAACGAAACAGGCTCCCGAGTGAGCCTGTTTTTTTACCTGAGCGCCGTGCCGGAATCAGCCCAGCGTC TTCTCGATCAGCGCCTTCAC
Product: lipase/esterase
Products: NA
Alternate protein names: Triacylglycerol lipase [H]
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MRNRLTTLALATALALPAAAHAYSNIYFFGDSLTDIGAFGGLGGLPSTARWTLGYGPGWSQDFGGRFGIAVTPNNPNNST ITAKNGNNYAQGDARAQPANPVNTNPESPTGSPVPGAINVSDLVDLTVNGAVTNPGQISTYLAQSGGKADPNALYSIWIG GNDVINSLTVGQTAMATALAGGATQAQAQTAASNAIQSYLTTSATNTVQAVGALKARGANTILLPNLPNIATAPLAVFAT INAKYSTPADAANLATAWGAAWNVLSASPTATSAALVQQALAAAETSVGLSSGTLSNIYSTQVQPTLQSGSSGYNQLVDM QLVGAGLSHGIIRANINGLFNEILANPTAYGLTNTSGSACPQSALYCNAQVVAGINYLFTDPLHPTPQAYKIVSDYFYGL TQAPYFAAAIPESSLNNARQLGGALDARYQAIRSQKRAVGEVSAFVNGAFGDGKASYGGLSAKPKGQLYTVGLDFQATPA LSVGLAMSRQQGKTDVDSVGTPGSIDDRTTLMSGFASYNQNKFWVDGDLHIGSGDLDTHRNVTLGPTTVGIDGKTRATQF GLRAAGGYRMQYRGVTTGPVAGLDYAYAKIAGFAEQGGTSSSMSFSSQNVSSLVGRVGWQLDAEVGRFSPYAKVSFAHEF KQNDRSVTAGLATTVGDWTTNLGKPDANWMEWTAGVSANFNKTITAFGQLTATSGKNGGNQTGGNIGVAMSF
Sequences:
>Translated_712_residues MRNRLTTLALATALALPAAAHAYSNIYFFGDSLTDIGAFGGLGGLPSTARWTLGYGPGWSQDFGGRFGIAVTPNNPNNST ITAKNGNNYAQGDARAQPANPVNTNPESPTGSPVPGAINVSDLVDLTVNGAVTNPGQISTYLAQSGGKADPNALYSIWIG GNDVINSLTVGQTAMATALAGGATQAQAQTAASNAIQSYLTTSATNTVQAVGALKARGANTILLPNLPNIATAPLAVFAT INAKYSTPADAANLATAWGAAWNVLSASPTATSAALVQQALAAAETSVGLSSGTLSNIYSTQVQPTLQSGSSGYNQLVDM QLVGAGLSHGIIRANINGLFNEILANPTAYGLTNTSGSACPQSALYCNAQVVAGINYLFTDPLHPTPQAYKIVSDYFYGL TQAPYFAAAIPESSLNNARQLGGALDARYQAIRSQKRAVGEVSAFVNGAFGDGKASYGGLSAKPKGQLYTVGLDFQATPA LSVGLAMSRQQGKTDVDSVGTPGSIDDRTTLMSGFASYNQNKFWVDGDLHIGSGDLDTHRNVTLGPTTVGIDGKTRATQF GLRAAGGYRMQYRGVTTGPVAGLDYAYAKIAGFAEQGGTSSSMSFSSQNVSSLVGRVGWQLDAEVGRFSPYAKVSFAHEF KQNDRSVTAGLATTVGDWTTNLGKPDANWMEWTAGVSANFNKTITAFGQLTATSGKNGGNQTGGNIGVAMSF >Mature_712_residues MRNRLTTLALATALALPAAAHAYSNIYFFGDSLTDIGAFGGLGGLPSTARWTLGYGPGWSQDFGGRFGIAVTPNNPNNST ITAKNGNNYAQGDARAQPANPVNTNPESPTGSPVPGAINVSDLVDLTVNGAVTNPGQISTYLAQSGGKADPNALYSIWIG GNDVINSLTVGQTAMATALAGGATQAQAQTAASNAIQSYLTTSATNTVQAVGALKARGANTILLPNLPNIATAPLAVFAT INAKYSTPADAANLATAWGAAWNVLSASPTATSAALVQQALAAAETSVGLSSGTLSNIYSTQVQPTLQSGSSGYNQLVDM QLVGAGLSHGIIRANINGLFNEILANPTAYGLTNTSGSACPQSALYCNAQVVAGINYLFTDPLHPTPQAYKIVSDYFYGL TQAPYFAAAIPESSLNNARQLGGALDARYQAIRSQKRAVGEVSAFVNGAFGDGKASYGGLSAKPKGQLYTVGLDFQATPA LSVGLAMSRQQGKTDVDSVGTPGSIDDRTTLMSGFASYNQNKFWVDGDLHIGSGDLDTHRNVTLGPTTVGIDGKTRATQF GLRAAGGYRMQYRGVTTGPVAGLDYAYAKIAGFAEQGGTSSSMSFSSQNVSSLVGRVGWQLDAEVGRFSPYAKVSFAHEF KQNDRSVTAGLATTVGDWTTNLGKPDANWMEWTAGVSANFNKTITAFGQLTATSGKNGGNQTGGNIGVAMSF
Specific function: Unknown
COG id: COG3240
COG function: function code IR; Phospholipase/lecithinase/hemolysin
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR013830 - InterPro: IPR017186 - InterPro: IPR001087 - InterPro: IPR008265 - InterPro: IPR006315 [H]
Pfam domain/function: PF03797 Autotransporter; PF00657 Lipase_GDSL [H]
EC number: =3.1.1.3 [H]
Molecular weight: Translated: 73295; Mature: 73295
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNRLTTLALATALALPAAAHAYSNIYFFGDSLTDIGAFGGLGGLPSTARWTLGYGPGWS CCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCCC QDFGGRFGIAVTPNNPNNSTITAKNGNNYAQGDARAQPANPVNTNPESPTGSPVPGAINV CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SDLVDLTVNGAVTNPGQISTYLAQSGGKADPNALYSIWIGGNDVINSLTVGQTAMATALA HHEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHC GGATQAQAQTAASNAIQSYLTTSATNTVQAVGALKARGANTILLPNLPNIATAPLAVFAT CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEE INAKYSTPADAANLATAWGAAWNVLSASPTATSAALVQQALAAAETSVGLSSGTLSNIYS ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TQVQPTLQSGSSGYNQLVDMQLVGAGLSHGIIRANINGLFNEILANPTAYGLTNTSGSAC CCCCHHHHCCCCCHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC PQSALYCNAQVVAGINYLFTDPLHPTPQAYKIVSDYFYGLTQAPYFAAAIPESSLNNARQ CCCCEEECCCCEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH LGGALDARYQAIRSQKRAVGEVSAFVNGAFGDGKASYGGLSAKPKGQLYTVGLDFQATPA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC LSVGLAMSRQQGKTDVDSVGTPGSIDDRTTLMSGFASYNQNKFWVDGDLHIGSGDLDTHR HHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCC NVTLGPTTVGIDGKTRATQFGLRAAGGYRMQYRGVTTGPVAGLDYAYAKIAGFAEQGGTS CEEECCEEECCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC SSMSFSSQNVSSLVGRVGWQLDAEVGRFSPYAKVSFAHEFKQNDRSVTAGLATTVGDWTT CCCCCCHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHCCHHC NLGKPDANWMEWTAGVSANFNKTITAFGQLTATSGKNGGNQTGGNIGVAMSF CCCCCCCCHHEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure MRNRLTTLALATALALPAAAHAYSNIYFFGDSLTDIGAFGGLGGLPSTARWTLGYGPGWS CCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCCC QDFGGRFGIAVTPNNPNNSTITAKNGNNYAQGDARAQPANPVNTNPESPTGSPVPGAINV CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SDLVDLTVNGAVTNPGQISTYLAQSGGKADPNALYSIWIGGNDVINSLTVGQTAMATALA HHEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHC GGATQAQAQTAASNAIQSYLTTSATNTVQAVGALKARGANTILLPNLPNIATAPLAVFAT CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEE INAKYSTPADAANLATAWGAAWNVLSASPTATSAALVQQALAAAETSVGLSSGTLSNIYS ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TQVQPTLQSGSSGYNQLVDMQLVGAGLSHGIIRANINGLFNEILANPTAYGLTNTSGSAC CCCCHHHHCCCCCHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC PQSALYCNAQVVAGINYLFTDPLHPTPQAYKIVSDYFYGLTQAPYFAAAIPESSLNNARQ CCCCEEECCCCEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH LGGALDARYQAIRSQKRAVGEVSAFVNGAFGDGKASYGGLSAKPKGQLYTVGLDFQATPA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC LSVGLAMSRQQGKTDVDSVGTPGSIDDRTTLMSGFASYNQNKFWVDGDLHIGSGDLDTHR HHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCC NVTLGPTTVGIDGKTRATQFGLRAAGGYRMQYRGVTTGPVAGLDYAYAKIAGFAEQGGTS CEEECCEEECCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC SSMSFSSQNVSSLVGRVGWQLDAEVGRFSPYAKVSFAHEFKQNDRSVTAGLATTVGDWTT CCCCCCHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHCCHHC NLGKPDANWMEWTAGVSANFNKTITAFGQLTATSGKNGGNQTGGNIGVAMSF CCCCCCCCHHEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8449874 [H]