| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496384
Identifier: 34496384
GI number: 34496384
Start: 962747
End: 964519
Strand: Reverse
Name: 34496384
Synonym: CV_0929
Alternate gene names: NA
Gene position: 964519-962747 (Counterclockwise)
Preceding gene: 34496389
Following gene: 34496378
Centisome position: 20.3
GC content: 63.45
Gene sequence:
>1773_bases ATGATGAATACCGTGATGAAACAACCCATTCTCGCCTTGGCCTGCGCGCTCGCGCTGACGGCCTGCGAAAGCAGCGACGA CCACGCGGCGTCCGGCGCCAGCGGCCAGACGCTCGGCCAAATCAGTGGCACCGCGGCTTCCGGCGCCCCCTTGGACAATG GCACGATCACGATCAAAGACGCACAGGGCCGCGCGATTACAGTGCAGACCGATGCGCAAGGACGCTACAGCGCGGACTTG AGCCAGTTCGCCTCGCCTGCGCTGCTGGAAGCCACGGGCCTGATCGGCGGCATGCCGGTATCGCTCCACTCCGTCGCCAC GCAAGCCGGAACCGTCAATATCACCCCGCTGACCGATGCCATCCTGTCGATGAGCAGCGGCGCCGAGGCAAGCGAGTGCT TCCTCAACGCCGCGGCTTGCACGGCAAAGTTCGACATTGCCAAACTGGAGCAGAGCCAGGCCAGTCTGAAAGCCGCGCTG GCCCCCCTGATGCAGGCGGTCGGCCTGGATAGCCGCACCGATCTGCTGCGGACCGCCTTTGCCGCCGACAAGACCGGGCA GGATAAATTGCTGGAAATGGTGGACGTCTCCGCCGACGGCCAAGCGGGAAGCATCCGTTTGCAAAGCAAGCGCGCCCAAA CGGCAATTAAGGTGAGCCGCGATCAAAAGCCAACCCCCTTACCGGCCGACGATCTACCCGACCTGAGCCGGCTGGATGAG CTGGCCGCACAGCTGAACGCCGCGTATCTCAGCGCGGACGGCCTGGACAAGCGCCTGGCGACATTGCTCAACGACGATTT CCAGTTTGACGGCGACAATGCGGCGCAATACCTCGCGCGGGAAATGGATGACGCCGGATACGGGGAAACCTATGTCGGCG GACGTTTCTCGCCGCCGAAAGTGGAAACCTGCTACAGCGCCGCGCTTTGCCAGATTTCGATGACGGTCCGCGTGCCGGGC ATGGCGCCCGGGTCTTTCCGCATGAAGGCCCGCTTGCAGAAAGAAGGCTGGAAGCTGGCGGGAAATGACAGCCCGGTCTC CTTGGAAATCGGACCTGGGGCCCGCCAGATCATCAGCGCCGCCGACAAGAGCAACGTCAAGGTCAGCCTGCTGACTCTGG CGCTCAGCCAGTATGCCCGGCACGACAACCCGGTCTACCCCCAGTCAGACCGCCCCGCGCCGCAAGTGATCGCCCGCAGC GCCCAGCTGCTGGCGGACGGCAAAGCCATCCTGACCCTGAAGGAAAATGCGGAGTGCGAACAGCTGGAGCCGCAGGAGCT GGCATCGGCGAACCCTGACTATCATTGTCCGGTGAATTATCTGACGCCCGACGGCTTCGCGGCCGTCTACAACGATGCCT TGAGTCGGAACGTTCTGAAATTGCGCTTTTACGCCGATGATCACTTCGCCCAGCCGGTCGGCAAGGACGTCATTCCGCGC GCGCCGCTGTTCACCGCCAATCAGATCAGCCAACAAGCCTTTCCCACCCTGACCAGCGACACGCTGCAGACGCTGACCAA GGCCAACGGCGCCAGCGATCTGAAATTGGCCTGGCAAGTGCCGCCGCAACTCTGGTTCAACAGCCTGTCGCTGGACATGC GTCAACAAGGCCAGCCACAGCGCTTCGAAGACAGCGCGGGCGCATTAGCCAATCCGCTAGCGCTCAACGCTCACAAGAGC CCCACGCTGACCGCGCCCGACTTCCTGCGCGTCACGGTCTGGAGCCTGGATAGGCAAGGCCGGGGCCTCTACACCCGCTA TCAACTGCGTTGA
Upstream 100 bases:
>100_bases TCGCCACTGCCCGGCCGGACAAAAATGACAAACACGAAATGTCAATGTACTATCACGTCCTAATTTTTCTTCCCCGCTCT GCAAAACCAGAATCATTCGA
Downstream 100 bases:
>100_bases AACCGTTGTCCAGCAAAAAGCCCCGGCAAGCCGGGGCTTTCTTCATCGCGGACGCGGCGCGCTTACAGCACCAGCACCGC TTCGGCTTCCACCAGCACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MMNTVMKQPILALACALALTACESSDDHAASGASGQTLGQISGTAASGAPLDNGTITIKDAQGRAITVQTDAQGRYSADL SQFASPALLEATGLIGGMPVSLHSVATQAGTVNITPLTDAILSMSSGAEASECFLNAAACTAKFDIAKLEQSQASLKAAL APLMQAVGLDSRTDLLRTAFAADKTGQDKLLEMVDVSADGQAGSIRLQSKRAQTAIKVSRDQKPTPLPADDLPDLSRLDE LAAQLNAAYLSADGLDKRLATLLNDDFQFDGDNAAQYLAREMDDAGYGETYVGGRFSPPKVETCYSAALCQISMTVRVPG MAPGSFRMKARLQKEGWKLAGNDSPVSLEIGPGARQIISAADKSNVKVSLLTLALSQYARHDNPVYPQSDRPAPQVIARS AQLLADGKAILTLKENAECEQLEPQELASANPDYHCPVNYLTPDGFAAVYNDALSRNVLKLRFYADDHFAQPVGKDVIPR APLFTANQISQQAFPTLTSDTLQTLTKANGASDLKLAWQVPPQLWFNSLSLDMRQQGQPQRFEDSAGALANPLALNAHKS PTLTAPDFLRVTVWSLDRQGRGLYTRYQLR
Sequences:
>Translated_590_residues MMNTVMKQPILALACALALTACESSDDHAASGASGQTLGQISGTAASGAPLDNGTITIKDAQGRAITVQTDAQGRYSADL SQFASPALLEATGLIGGMPVSLHSVATQAGTVNITPLTDAILSMSSGAEASECFLNAAACTAKFDIAKLEQSQASLKAAL APLMQAVGLDSRTDLLRTAFAADKTGQDKLLEMVDVSADGQAGSIRLQSKRAQTAIKVSRDQKPTPLPADDLPDLSRLDE LAAQLNAAYLSADGLDKRLATLLNDDFQFDGDNAAQYLAREMDDAGYGETYVGGRFSPPKVETCYSAALCQISMTVRVPG MAPGSFRMKARLQKEGWKLAGNDSPVSLEIGPGARQIISAADKSNVKVSLLTLALSQYARHDNPVYPQSDRPAPQVIARS AQLLADGKAILTLKENAECEQLEPQELASANPDYHCPVNYLTPDGFAAVYNDALSRNVLKLRFYADDHFAQPVGKDVIPR APLFTANQISQQAFPTLTSDTLQTLTKANGASDLKLAWQVPPQLWFNSLSLDMRQQGQPQRFEDSAGALANPLALNAHKS PTLTAPDFLRVTVWSLDRQGRGLYTRYQLR >Mature_590_residues MMNTVMKQPILALACALALTACESSDDHAASGASGQTLGQISGTAASGAPLDNGTITIKDAQGRAITVQTDAQGRYSADL SQFASPALLEATGLIGGMPVSLHSVATQAGTVNITPLTDAILSMSSGAEASECFLNAAACTAKFDIAKLEQSQASLKAAL APLMQAVGLDSRTDLLRTAFAADKTGQDKLLEMVDVSADGQAGSIRLQSKRAQTAIKVSRDQKPTPLPADDLPDLSRLDE LAAQLNAAYLSADGLDKRLATLLNDDFQFDGDNAAQYLAREMDDAGYGETYVGGRFSPPKVETCYSAALCQISMTVRVPG MAPGSFRMKARLQKEGWKLAGNDSPVSLEIGPGARQIISAADKSNVKVSLLTLALSQYARHDNPVYPQSDRPAPQVIARS AQLLADGKAILTLKENAECEQLEPQELASANPDYHCPVNYLTPDGFAAVYNDALSRNVLKLRFYADDHFAQPVGKDVIPR APLFTANQISQQAFPTLTSDTLQTLTKANGASDLKLAWQVPPQLWFNSLSLDMRQQGQPQRFEDSAGALANPLALNAHKS PTLTAPDFLRVTVWSLDRQGRGLYTRYQLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62931; Mature: 62931
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNTVMKQPILALACALALTACESSDDHAASGASGQTLGQISGTAASGAPLDNGTITIKD CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCEEEEEE AQGRAITVQTDAQGRYSADLSQFASPALLEATGLIGGMPVSLHSVATQAGTVNITPLTDA CCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEECHHHHH ILSMSSGAEASECFLNAAACTAKFDIAKLEQSQASLKAALAPLMQAVGLDSRTDLLRTAF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH AADKTGQDKLLEMVDVSADGQAGSIRLQSKRAQTAIKVSRDQKPTPLPADDLPDLSRLDE HCCCCCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHEECCCCCCCCCCCCCCCCHHHHHH LAAQLNAAYLSADGLDKRLATLLNDDFQFDGDNAAQYLAREMDDAGYGETYVGGRFSPPK HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC VETCYSAALCQISMTVRVPGMAPGSFRMKARLQKEGWKLAGNDSPVSLEIGPGARQIISA HHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHCCCEECCCCCCEEEEECCCHHHHHHH ADKSNVKVSLLTLALSQYARHDNPVYPQSDRPAPQVIARSAQLLADGKAILTLKENAECE CCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC QLEPQELASANPDYHCPVNYLTPDGFAAVYNDALSRNVLKLRFYADDHFAQPVGKDVIPR CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCHHCCCCCCCCCCC APLFTANQISQQAFPTLTSDTLQTLTKANGASDLKLAWQVPPQLWFNSLSLDMRQQGQPQ CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCHHHCCCCC RFEDSAGALANPLALNAHKSPTLTAPDFLRVTVWSLDRQGRGLYTRYQLR CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECC >Mature Secondary Structure MMNTVMKQPILALACALALTACESSDDHAASGASGQTLGQISGTAASGAPLDNGTITIKD CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCEEEEEE AQGRAITVQTDAQGRYSADLSQFASPALLEATGLIGGMPVSLHSVATQAGTVNITPLTDA CCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEECHHHHH ILSMSSGAEASECFLNAAACTAKFDIAKLEQSQASLKAALAPLMQAVGLDSRTDLLRTAF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH AADKTGQDKLLEMVDVSADGQAGSIRLQSKRAQTAIKVSRDQKPTPLPADDLPDLSRLDE HCCCCCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHEECCCCCCCCCCCCCCCCHHHHHH LAAQLNAAYLSADGLDKRLATLLNDDFQFDGDNAAQYLAREMDDAGYGETYVGGRFSPPK HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC VETCYSAALCQISMTVRVPGMAPGSFRMKARLQKEGWKLAGNDSPVSLEIGPGARQIISA HHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHCCCEECCCCCCEEEEECCCHHHHHHH ADKSNVKVSLLTLALSQYARHDNPVYPQSDRPAPQVIARSAQLLADGKAILTLKENAECE CCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC QLEPQELASANPDYHCPVNYLTPDGFAAVYNDALSRNVLKLRFYADDHFAQPVGKDVIPR CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCHHCCCCCCCCCCC APLFTANQISQQAFPTLTSDTLQTLTKANGASDLKLAWQVPPQLWFNSLSLDMRQQGQPQ CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCHHHCCCCC RFEDSAGALANPLALNAHKSPTLTAPDFLRVTVWSLDRQGRGLYTRYQLR CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA