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The map label for this gene is glcD [H]

Identifier: 34496356

GI number: 34496356

Start: 931427

End: 932809

Strand: Reverse

Name: glcD [H]

Synonym: CV_0901

Alternate gene names: 34496356

Gene position: 932809-931427 (Counterclockwise)

Preceding gene: 34496357

Following gene: 34496350

Centisome position: 19.63

GC content: 70.14

Gene sequence:

>1383_bases
ATGAACGATTTTCTGACGCAGCTGGCCGCCATCGTCGGCCCGCGGCACCTCCTCACCGCCGACGCCGACACCGCGCCGTT
CACGCTGGACTGGCGCCGCCGCTACCAGGGCGCACCGCTGGCCGTGGCGCTGCCGGGCGATACCGCCGAAGTTTCGGCGC
TGGTCCGGCTATGCCGCGCGCACCGGGTGGCCATCGTGCCGCAAGGCGGCAACACTTCCACCTGCGGCGCGGCGACGCCG
GACGGCAGCGGCCGGCAGCTGGTGGTCGCGCTGCGGCGGCTGAACGCCATCCGCGGCGTGGACGCCGACAACAACGCGCT
GACCGTCGGCGCCGGCGTCACCCTGCAGCAGGCGCAGCAGGCGGCCGAAGCCGCCGGCCGGCTGTTTCCGCTGTCGCTGG
CCTCGCAGGGCAGCTGCCAGATCGGCGGCAATCTGTCCACCAACGCCGGCGGCGTCGCGGTGCTGCGCTACGGCACCATG
CGCGAACTGACGCTGGGGCTGGAGGCGGTGCTGCCGGACGGCCGCGTGCTGGACCAGCTGCAGGGCCTGCGCAAGGACAC
CACCGGCCTGGACCTGAAGCAGCTGTTCATCGGCGCCGAAGGCCAGCTGGGCCTGATCACCGCCGCCACGCTGAAGCTGT
TCCCGCTGCCCAGCGCCCACGCCACCGCGATGGTCGGCGTCGGCGACATCGAAACGGCGATAGACTGGCTGAACCGGCTG
CGCCACCGCTTCGGCGACCGGCTGACCGCCTTCGAGGTGATGGACGCCAGCTGCCAGCAGGTGCTGCTGCGCCACCATCC
GTCGCTGATGCCGTTCAGCGCGCCGTGGCTGATCCTGATCGAGCTGTCCGACGGCGGCGATCCGGCGCAATTGAACGACG
CGCTGGCCGAATGGCTCGCCACTCAGGACATGCTGGACGGCGTCATCGCGCAGAACGAGACCGAGCGGCGCAAGCTGTGG
ACGCTGCGCGAGGAGATATCGGAAAGCCAGCGCAAGGACGGCCCCAGCATCAAGCACGACATCGCGGTCCCCACCTCCGC
GCTGCCGCGGCTGGTCCGCGATTGCGCGGCGGATCTGAACCAGGCCTTTCCCGGCGTGCGCATCGTCGCCTTCGGCCATG
CCGGCGACGGCAATCTGCATTACAACGTCAGCTTCACCCGCCCCGGCAACGCCGATCTGTTCGACGACGAACCGGCGGTC
AACGCCATCGTCTACGACCACGTCTACCGGCTGGGCGGCACGCTGGCGGCGGAACACGGCGTCGGCCAATTGAAGAAAGA
CTGGCTGGTCCGCTACAAGGACCCGCTGGCGCTGGAGCTGATGCGGACGATCAAGGCCGCGCTGGACCCGGACGGGCTGA
TGAATCCGGGCAAGTGGCTGTAG

Upstream 100 bases:

>100_bases
AATGGTGGCACTGGTCGTACGGCGACCGCTACTGGGCGGCGCAGACCGGCGCGCCGGCCGCGCTGTACGCCGCCGTGGAT
GAAAGCCTGCTGGAAGCGAT

Downstream 100 bases:

>100_bases
GGCGGAAGCCCGGCCGCGCCGGGCGTTCCGCCTATCATGGCCTAAGCTTGGCGGAACGCCCCCCTGGGGCTTCCGCCCTA
CTTGCGGATGCGCAGCATCA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MNDFLTQLAAIVGPRHLLTADADTAPFTLDWRRRYQGAPLAVALPGDTAEVSALVRLCRAHRVAIVPQGGNTSTCGAATP
DGSGRQLVVALRRLNAIRGVDADNNALTVGAGVTLQQAQQAAEAAGRLFPLSLASQGSCQIGGNLSTNAGGVAVLRYGTM
RELTLGLEAVLPDGRVLDQLQGLRKDTTGLDLKQLFIGAEGQLGLITAATLKLFPLPSAHATAMVGVGDIETAIDWLNRL
RHRFGDRLTAFEVMDASCQQVLLRHHPSLMPFSAPWLILIELSDGGDPAQLNDALAEWLATQDMLDGVIAQNETERRKLW
TLREEISESQRKDGPSIKHDIAVPTSALPRLVRDCAADLNQAFPGVRIVAFGHAGDGNLHYNVSFTRPGNADLFDDEPAV
NAIVYDHVYRLGGTLAAEHGVGQLKKDWLVRYKDPLALELMRTIKAALDPDGLMNPGKWL

Sequences:

>Translated_460_residues
MNDFLTQLAAIVGPRHLLTADADTAPFTLDWRRRYQGAPLAVALPGDTAEVSALVRLCRAHRVAIVPQGGNTSTCGAATP
DGSGRQLVVALRRLNAIRGVDADNNALTVGAGVTLQQAQQAAEAAGRLFPLSLASQGSCQIGGNLSTNAGGVAVLRYGTM
RELTLGLEAVLPDGRVLDQLQGLRKDTTGLDLKQLFIGAEGQLGLITAATLKLFPLPSAHATAMVGVGDIETAIDWLNRL
RHRFGDRLTAFEVMDASCQQVLLRHHPSLMPFSAPWLILIELSDGGDPAQLNDALAEWLATQDMLDGVIAQNETERRKLW
TLREEISESQRKDGPSIKHDIAVPTSALPRLVRDCAADLNQAFPGVRIVAFGHAGDGNLHYNVSFTRPGNADLFDDEPAV
NAIVYDHVYRLGGTLAAEHGVGQLKKDWLVRYKDPLALELMRTIKAALDPDGLMNPGKWL
>Mature_460_residues
MNDFLTQLAAIVGPRHLLTADADTAPFTLDWRRRYQGAPLAVALPGDTAEVSALVRLCRAHRVAIVPQGGNTSTCGAATP
DGSGRQLVVALRRLNAIRGVDADNNALTVGAGVTLQQAQQAAEAAGRLFPLSLASQGSCQIGGNLSTNAGGVAVLRYGTM
RELTLGLEAVLPDGRVLDQLQGLRKDTTGLDLKQLFIGAEGQLGLITAATLKLFPLPSAHATAMVGVGDIETAIDWLNRL
RHRFGDRLTAFEVMDASCQQVLLRHHPSLMPFSAPWLILIELSDGGDPAQLNDALAEWLATQDMLDGVIAQNETERRKLW
TLREEISESQRKDGPSIKHDIAVPTSALPRLVRDCAADLNQAFPGVRIVAFGHAGDGNLHYNVSFTRPGNADLFDDEPAV
NAIVYDHVYRLGGTLAAEHGVGQLKKDWLVRYKDPLALELMRTIKAALDPDGLMNPGKWL

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=448, Percent_Identity=38.3928571428571, Blast_Score=282, Evalue=6e-76,
Organism=Homo sapiens, GI37595756, Length=475, Percent_Identity=32.2105263157895, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI37595754, Length=498, Percent_Identity=30.9236947791165, Blast_Score=172, Evalue=8e-43,
Organism=Homo sapiens, GI4501993, Length=460, Percent_Identity=23.9130434782609, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1789351, Length=451, Percent_Identity=30.5986696230599, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI48994907, Length=478, Percent_Identity=23.8493723849372, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787977, Length=507, Percent_Identity=25.2465483234714, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17534361, Length=449, Percent_Identity=33.8530066815145, Blast_Score=258, Evalue=4e-69,
Organism=Caenorhabditis elegans, GI71992373, Length=469, Percent_Identity=26.4392324093817, Blast_Score=144, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI71992381, Length=469, Percent_Identity=26.226012793177, Blast_Score=141, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI71992392, Length=353, Percent_Identity=28.8951841359773, Blast_Score=128, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17556096, Length=204, Percent_Identity=26.9607843137255, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320023, Length=475, Percent_Identity=35.5789473684211, Blast_Score=301, Evalue=1e-82,
Organism=Saccharomyces cerevisiae, GI6320764, Length=474, Percent_Identity=31.6455696202532, Blast_Score=265, Evalue=1e-71,
Organism=Saccharomyces cerevisiae, GI6320027, Length=437, Percent_Identity=28.1464530892449, Blast_Score=161, Evalue=2e-40,
Organism=Drosophila melanogaster, GI18921117, Length=462, Percent_Identity=33.982683982684, Blast_Score=260, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24639277, Length=462, Percent_Identity=33.982683982684, Blast_Score=260, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24639275, Length=462, Percent_Identity=33.982683982684, Blast_Score=260, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24653753, Length=215, Percent_Identity=26.9767441860465, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49461; Mature: 49461

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFLTQLAAIVGPRHLLTADADTAPFTLDWRRRYQGAPLAVALPGDTAEVSALVRLCRA
CCHHHHHHHHHHCCCCEEECCCCCCCEEEHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
HRVAIVPQGGNTSTCGAATPDGSGRQLVVALRRLNAIRGVDADNNALTVGAGVTLQQAQQ
CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
AAEAAGRLFPLSLASQGSCQIGGNLSTNAGGVAVLRYGTMRELTLGLEAVLPDGRVLDQL
HHHHHCCEEEEECCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHH
QGLRKDTTGLDLKQLFIGAEGQLGLITAATLKLFPLPSAHATAMVGVGDIETAIDWLNRL
HHHHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHH
RHRFGDRLTAFEVMDASCQQVLLRHHPSLMPFSAPWLILIELSDGGDPAQLNDALAEWLA
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
TQDMLDGVIAQNETERRKLWTLREEISESQRKDGPSIKHDIAVPTSALPRLVRDCAADLN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAFPGVRIVAFGHAGDGNLHYNVSFTRPGNADLFDDEPAVNAIVYDHVYRLGGTLAAEHG
HCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
VGQLKKDWLVRYKDPLALELMRTIKAALDPDGLMNPGKWL
CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNDFLTQLAAIVGPRHLLTADADTAPFTLDWRRRYQGAPLAVALPGDTAEVSALVRLCRA
CCHHHHHHHHHHCCCCEEECCCCCCCEEEHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
HRVAIVPQGGNTSTCGAATPDGSGRQLVVALRRLNAIRGVDADNNALTVGAGVTLQQAQQ
CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
AAEAAGRLFPLSLASQGSCQIGGNLSTNAGGVAVLRYGTMRELTLGLEAVLPDGRVLDQL
HHHHHCCEEEEECCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHH
QGLRKDTTGLDLKQLFIGAEGQLGLITAATLKLFPLPSAHATAMVGVGDIETAIDWLNRL
HHHHCCCCCCCHHHHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHH
RHRFGDRLTAFEVMDASCQQVLLRHHPSLMPFSAPWLILIELSDGGDPAQLNDALAEWLA
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
TQDMLDGVIAQNETERRKLWTLREEISESQRKDGPSIKHDIAVPTSALPRLVRDCAADLN
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAFPGVRIVAFGHAGDGNLHYNVSFTRPGNADLFDDEPAVNAIVYDHVYRLGGTLAAEHG
HCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
VGQLKKDWLVRYKDPLALELMRTIKAALDPDGLMNPGKWL
CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]