| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is pilQ [H]
Identifier: 34496284
GI number: 34496284
Start: 856060
End: 858153
Strand: Reverse
Name: pilQ [H]
Synonym: CV_0829
Alternate gene names: 34496284
Gene position: 858153-856060 (Counterclockwise)
Preceding gene: 34496285
Following gene: 34496283
Centisome position: 18.06
GC content: 65.14
Gene sequence:
>2094_bases ATGAAAAGACTCGGCATCGCATTGTGGACAGGCCTGGCCTTGTGCCTGAGCGGGGGACTCGCCGCCGCCGCGCCGGCCAT CACCGCGCTGGACGCGGGCAAGGTGGACGGCAACCGGCAGACGCTGCAGATCACCTTCGACGGCCCCGCGGTCAAGCCCA ACAGCTTCGCCCTGTCCAATCCGCCCCGCATCGCGCTGGATTTCGCCAACACCGGGGTCAAGATGGCCAAGCCTTCGCTC AATGTCGACAGCCCGCTGCTGCGTTCGGCCGTCGCGGTGGAGGCCAGCGGCCGCTCGCGGCTGGTGCTGAGCCTGGCCCG CAACGCCAGCTATCGCAGCGAGGTCAGCGGCAACCGCCTGCTGCTGACGCTGGACGGCTCGATGTCGACCGAACAGGCCG CCACGCCGCAGGAGCTGGTGCCGACGTCCCGCGCCGACGCGCAGGCGCAGATCGCCGCAAAAGGCGCGGCCGGCCTGGAC TTCCGCCGCGGCCGCAATGGCGAGGGCCGGGTCGAGCTGGCGCTCCCCAGCGCCAACACGCCGGTGGACATCCGCCGAGA CGGCGCCAACCTGGTGGTGGACATCGCCGGCGCCTCGCTGCCGCCCCAATTGGTGCGCCGCGTCGACGTCACCGACTTCG GCACCCCGGTGGCCAAGGTGGATGCCGCCAACCTGGGCGGCAACATCCGCGTCACGGTGATTCCGCAGGGCGACTGGGAA TACTCGTCATACCAGACCGACGGCAAGCTGGTGGTGGAAGTGCGCCGACCGGCGCTCGAAACGGCTGGCGGCGCGGCCGG CAAGCCCCAGTACAAGGGCGACAAGCTGTCGCTGAATTTCCAGAACATCGAAGTCCGCACCGTGCTGCAGGTGATCGCCG AATTCACCGGCCTCAACGTCGTCACCAGCGACTCCGTCACCGGCAACATCACGCTCAGGCTGAAGGACGTGCCCTGGGAC CAGGCGCTTGACCTGATCCTGCAGAGCAAGGGACTGGACCAGCGCCGCAACGGCAACATCATCCAGATCGCGCCGCGCGA CGAACTGCTGGCGCGCGACAAGCAGGTGCAGGAGGCGCGGCAACAGCTGGCGACGCTGGAGCCGCTGCGCTCGGAAACCT TCGTGCTGCGCTACCGCTCGGCCGAGGACTTCAAGAAGGTGCTGGATGGCGACAACAACTCTGGCAAGAAGGAGAGCCTG CTGTCCGAACGCGGCAGCGTGCTGATCGACCCCAAGACCAACACGCTGATCGTCAACGACATCGGCACGGCGATAGACAA GATCCGCGACGTCATCACCAAGACCGACATCCCCGTGAAGCAGGTGTTGATCGAGGCCCGCATCGTCGAGGCCACCGACA ACTGGGAACGCGATCTGGGCATCAAGCTCACCTACGACAGAATGGACCCCAAGGGCATCATTTCCGGCAACCCGCTCGGC ACCAACGTCAACAACGTCACCAACCTGAACAACAACCAACCCTACGTGATCCAGACCACGCCCGCCGGCGTCAACCTGCC TATCGCCACCCCGTACGGCACGTTGTCCGCGCTGTACAACGTCGGCCACTCGGTGATCCTGGGACTGGAGCTGCAGGCGA TGCAGGCCGAGGACAAGGGCCGCATCATTTCCAGCCCGCGGGTGATGACCGCCGACCGCCAGGAAGCCTCCATCGAGCAG GGCACGGAAATCCCCTACCAGGAGGCCAGCTCCAGCGGCGCGACCTCGGTGTCGTTCAAGAAGGCGGTGCTCCGCCTCAA CGTCAAGCCGCAGATCACGCCGGACAACCACGTGATCATGGACATCACCGTCAACAAGGATTCAGCCAACTTCGAGAAAA CCGTCAACGGCACGCCGTCGCTGTCGACCGAGAAGATCATCACCCAGGTGCTGGTGGAAAACGGCGGCACAGTAGTGCTG GGCGGCATCTACCAGCAACAGCTGAACGATGTGATCAACAAGGTGCCCTTCCTCGGCGACATCCCCTTGCTGGGCGCGCT GTTCCGCAGCTCGCAGAAGATCGACAAACGCAGCGAACTGCTGATTTTCATCACGCCCAAAGTGATCAACGACCTGGTCG CCGAGTCTCGCTAA
Upstream 100 bases:
>100_bases GCGATGCGGAGGTGCAGCTTGCCGAAACCGTCGAAGACCTGAATGGAGAGTGGGTGCAGCGCAGCAGCGGCCTGCATCTG GAAGAACAAGGGCAGAACAA
Downstream 100 bases:
>100_bases GCGGCCAAGACAGATTCGTTAACGATCGGCTACAATGCCTGCCATGGAGAAACTGGCAGGCAACTTTTTTCTGGTCGGTC TGATGGGCGCGGGCAAGACC
Product: type 4 fimbrial biogenesis protein PilQ
Products: NA
Alternate protein names: Outer membrane protein omc [H]
Number of amino acids: Translated: 697; Mature: 697
Protein sequence:
>697_residues MKRLGIALWTGLALCLSGGLAAAAPAITALDAGKVDGNRQTLQITFDGPAVKPNSFALSNPPRIALDFANTGVKMAKPSL NVDSPLLRSAVAVEASGRSRLVLSLARNASYRSEVSGNRLLLTLDGSMSTEQAATPQELVPTSRADAQAQIAAKGAAGLD FRRGRNGEGRVELALPSANTPVDIRRDGANLVVDIAGASLPPQLVRRVDVTDFGTPVAKVDAANLGGNIRVTVIPQGDWE YSSYQTDGKLVVEVRRPALETAGGAAGKPQYKGDKLSLNFQNIEVRTVLQVIAEFTGLNVVTSDSVTGNITLRLKDVPWD QALDLILQSKGLDQRRNGNIIQIAPRDELLARDKQVQEARQQLATLEPLRSETFVLRYRSAEDFKKVLDGDNNSGKKESL LSERGSVLIDPKTNTLIVNDIGTAIDKIRDVITKTDIPVKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLG TNVNNVTNLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIEQ GTEIPYQEASSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVL GGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRSELLIFITPKVINDLVAESR
Sequences:
>Translated_697_residues MKRLGIALWTGLALCLSGGLAAAAPAITALDAGKVDGNRQTLQITFDGPAVKPNSFALSNPPRIALDFANTGVKMAKPSL NVDSPLLRSAVAVEASGRSRLVLSLARNASYRSEVSGNRLLLTLDGSMSTEQAATPQELVPTSRADAQAQIAAKGAAGLD FRRGRNGEGRVELALPSANTPVDIRRDGANLVVDIAGASLPPQLVRRVDVTDFGTPVAKVDAANLGGNIRVTVIPQGDWE YSSYQTDGKLVVEVRRPALETAGGAAGKPQYKGDKLSLNFQNIEVRTVLQVIAEFTGLNVVTSDSVTGNITLRLKDVPWD QALDLILQSKGLDQRRNGNIIQIAPRDELLARDKQVQEARQQLATLEPLRSETFVLRYRSAEDFKKVLDGDNNSGKKESL LSERGSVLIDPKTNTLIVNDIGTAIDKIRDVITKTDIPVKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLG TNVNNVTNLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIEQ GTEIPYQEASSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVL GGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRSELLIFITPKVINDLVAESR >Mature_697_residues MKRLGIALWTGLALCLSGGLAAAAPAITALDAGKVDGNRQTLQITFDGPAVKPNSFALSNPPRIALDFANTGVKMAKPSL NVDSPLLRSAVAVEASGRSRLVLSLARNASYRSEVSGNRLLLTLDGSMSTEQAATPQELVPTSRADAQAQIAAKGAAGLD FRRGRNGEGRVELALPSANTPVDIRRDGANLVVDIAGASLPPQLVRRVDVTDFGTPVAKVDAANLGGNIRVTVIPQGDWE YSSYQTDGKLVVEVRRPALETAGGAAGKPQYKGDKLSLNFQNIEVRTVLQVIAEFTGLNVVTSDSVTGNITLRLKDVPWD QALDLILQSKGLDQRRNGNIIQIAPRDELLARDKQVQEARQQLATLEPLRSETFVLRYRSAEDFKKVLDGDNNSGKKESL LSERGSVLIDPKTNTLIVNDIGTAIDKIRDVITKTDIPVKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLG TNVNNVTNLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIEQ GTEIPYQEASSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVL GGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRSELLIFITPKVINDLVAESR
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane. Note=Associated to the membrane through its C-terminus [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=436, Percent_Identity=34.8623853211009, Blast_Score=221, Evalue=1e-58, Organism=Escherichia coli, GI87082242, Length=364, Percent_Identity=26.9230769230769, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 75071; Mature: 75071
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: PS00875 T2SP_D
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLGIALWTGLALCLSGGLAAAAPAITALDAGKVDGNRQTLQITFDGPAVKPNSFALSN CCCCHHHHHHHHHHHHCCCCHHHCCHHEEECCCCCCCCCEEEEEEECCCCCCCCCEECCC PPRIALDFANTGVKMAKPSLNVDSPLLRSAVAVEASGRSRLVLSLARNASYRSEVSGNRL CCEEEEEECCCCEEEECCCCCCCCHHHHHEEEEECCCCCEEEEEECCCCCCHHCCCCCEE LLTLDGSMSTEQAATPQELVPTSRADAQAQIAAKGAAGLDFRRGRNGEGRVELALPSANT EEEECCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC PVDIRRDGANLVVDIAGASLPPQLVRRVDVTDFGTPVAKVDAANLGGNIRVTVIPQGDWE CEEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC YSSYQTDGKLVVEVRRPALETAGGAAGKPQYKGDKLSLNFQNIEVRTVLQVIAEFTGLNV CCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEE VTSDSVTGNITLRLKDVPWDQALDLILQSKGLDQRRNGNIIQIAPRDELLARDKQVQEAR EECCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH QQLATLEPLRSETFVLRYRSAEDFKKVLDGDNNSGKKESLLSERGSVLIDPKTNTLIVND HHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCEEEEEC IGTAIDKIRDVITKTDIPVKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLG HHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCEECCCCCC TNVNNVTNLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKG CCCCCCCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHCCCEEEEEEEEEEECCCCCC RIISSPRVMTADRQEASIEQGTEIPYQEASSSGATSVSFKKAVLRLNVKPQITPDNHVIM CEECCCEEEECCCHHHHHHCCCCCCHHHCCCCCCCCHHEEEEEEEECCCCCCCCCCEEEE DITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGD EEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCC IPLLGALFRSSQKIDKRSELLIFITPKVINDLVAESR CHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCC >Mature Secondary Structure MKRLGIALWTGLALCLSGGLAAAAPAITALDAGKVDGNRQTLQITFDGPAVKPNSFALSN CCCCHHHHHHHHHHHHCCCCHHHCCHHEEECCCCCCCCCEEEEEEECCCCCCCCCEECCC PPRIALDFANTGVKMAKPSLNVDSPLLRSAVAVEASGRSRLVLSLARNASYRSEVSGNRL CCEEEEEECCCCEEEECCCCCCCCHHHHHEEEEECCCCCEEEEEECCCCCCHHCCCCCEE LLTLDGSMSTEQAATPQELVPTSRADAQAQIAAKGAAGLDFRRGRNGEGRVELALPSANT EEEECCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC PVDIRRDGANLVVDIAGASLPPQLVRRVDVTDFGTPVAKVDAANLGGNIRVTVIPQGDWE CEEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC YSSYQTDGKLVVEVRRPALETAGGAAGKPQYKGDKLSLNFQNIEVRTVLQVIAEFTGLNV CCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEE VTSDSVTGNITLRLKDVPWDQALDLILQSKGLDQRRNGNIIQIAPRDELLARDKQVQEAR EECCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH QQLATLEPLRSETFVLRYRSAEDFKKVLDGDNNSGKKESLLSERGSVLIDPKTNTLIVND HHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCEEEEEC IGTAIDKIRDVITKTDIPVKQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLG HHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCEECCCCCC TNVNNVTNLNNNQPYVIQTTPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKG CCCCCCCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHCCCEEEEEEEEEEECCCCCC RIISSPRVMTADRQEASIEQGTEIPYQEASSSGATSVSFKKAVLRLNVKPQITPDNHVIM CEECCCEEEECCCHHHHHHCCCCCCHHHCCCCCCCCHHEEEEEEEECCCCCCCCCCEEEE DITVNKDSANFEKTVNGTPSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGD EEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCC IPLLGALFRSSQKIDKRSELLIFITPKVINDLVAESR CHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA