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The map label for this gene is yccM [C]

Identifier: 34496248

GI number: 34496248

Start: 816116

End: 817573

Strand: Reverse

Name: yccM [C]

Synonym: CV_0793

Alternate gene names: 34496248

Gene position: 817573-816116 (Counterclockwise)

Preceding gene: 34496249

Following gene: 34496247

Centisome position: 17.21

GC content: 70.16

Gene sequence:

>1458_bases
ATGAAATCCGGCCGCGCCCAGCGCCCGCCGCAGCGGGTGATTCCCATCGCCGCAGCCTCCGGCGGCGGCTCCTGTAGCCC
CGAGCGGCAGCCGCGCGGCCTGCTGGCGCTCGCGGGCATCTGGCTGCGCGACCACGCCTCGCTGCTGCGCAAGCTGCAGT
GGGCGGTGGTGCTGGTTTACGCTTTCTTGCTGATCGTCCCCGCCTGCCTCTCGCTGCCGGAAGACACGGCAAGGATGTGG
AACAACCTGACCATCTTCGCCCAGTTCGTGTTCTGGGGCATCTGGTGGCCGTTCGTGCTGCTGTCGATGGTGCTGTTCGG
CCGCCTGTGGTGCGGGGTGCTGTGCCCCGAGGGCGCGCTGTCGGAATGGGCCGCGCGCAAGGGCATGGGCAGGCCGATCC
CGCGCTGGATGCGCTGGGGAGGCTGGCCTTTCGTCGCCTTCGTGCTGACCACGGTCTACGGCCAGCTGGTCAGCGTCTAC
CAATACCCGAAAGCCGCGCTGCTGGTGCTGGGCGGCTCCACCGTGGCCGCCGTGGCCATCGGCTTCGTCTACACCCGCGG
CAAGCGCGCCTGGTGCCGCCACCTGTGTCCGGTCAACGGCGTGTTCGGTCTGCTATCCAAGCTGGCGCCGCTGTACTACC
GCGTCGACGAGGCCGCCTGGAAGCGCTCGCAATCCGCCCACGAACGCACGCCGGCGGTCGACTGCGCGCCGCTGCAACCC
TTGCGCCACATGCAGGGCGGCAGCGGCTGCCATATGTGCGGCCGCTGCAGCGACCACCGCGGCGCGATCGAACTCAGCCT
GCGCTCGTCCAGCGACGAAGTGGTCCGCGTGGCGGAGAAAGAGGCCGACGGCTGGCAAACCGCGCTGATCGCCTACGGCC
TCTTGGGCGTGGCGATGGGCGCCTTCCACTGGACGGTCAGCCCCTGGTTCGTGGCGCTGAAGCAGGCGGCGGCCGAATGG
CTGGTGGACCGCGACATCATGTGGCCGCTGGACACCGAGGCCCCGTGGTGGCTGCTCACCCACTATCCGCAGCACAACGA
TGTGTTCTCCTGGCTGGACGGCGCGTCGCTGATCGCCTACGTCGCCGCCACCGCGCTGGTTCTCGGCACCGGCATCCTGG
CCTCGCTCGCCCTTTCGGTGGCGGTCTCCGGCGGCTGGCGCACGCAGCGTCTGCATCATCTGGCGCAGGCGCTGATCCCG
CTGGCCGGCTGCGGCGTCTTCCTCGGCCTGTCGGCGCTGACGGTGACGCTGCTGAAGGCCGAAGGCTTCGGCATGCACTG
GGTCAACGACGCCCGCCTGGCGCTGCTCGCCGGCGCCAATCTGTGGGCGCTGCATCTGGCGCGCCGCATCCTGGCGCGCT
GGAACGGCGGCCTGCGCCGCTGGATCGCGCTGTTGCCGTTCTGCGGCGCGCTGGCGCTGGTCGACTGCGCCTGGGGCTTC
ATGTTCTGGTGGTGGTAA

Upstream 100 bases:

>100_bases
GCTCGCACCCGGCGCTGATGAGCCTGATCGCCTACGCGCTGTTCTGGGCGGCGATCTGGTCGCTGTTCCAGTGGCGCAAC
CGCCGCCTGGCCGTCGCCGC

Downstream 100 bases:

>100_bases
AACCTTGGTGGGGGGATGGCGCTGTGCGATAACTACAGTGTCCCCCCGCTAGGAAAAGCCATGTGGCGTCTACTGCTACC
CGCTCTCGCCTTGTGCTTGG

Product: nitrogen fixation protein VnfA

Products: NA

Alternate protein names: Regulatory Protein; Polyferredoxin; Polyferredoxin-Like Protein; Nitrogen Assimilation Regulatory Protein; Polyferredoxin-Like; Transcriptional Regulator; Ferredoxin; Polyferredoxin Protein

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MKSGRAQRPPQRVIPIAAASGGGSCSPERQPRGLLALAGIWLRDHASLLRKLQWAVVLVYAFLLIVPACLSLPEDTARMW
NNLTIFAQFVFWGIWWPFVLLSMVLFGRLWCGVLCPEGALSEWAARKGMGRPIPRWMRWGGWPFVAFVLTTVYGQLVSVY
QYPKAALLVLGGSTVAAVAIGFVYTRGKRAWCRHLCPVNGVFGLLSKLAPLYYRVDEAAWKRSQSAHERTPAVDCAPLQP
LRHMQGGSGCHMCGRCSDHRGAIELSLRSSSDEVVRVAEKEADGWQTALIAYGLLGVAMGAFHWTVSPWFVALKQAAAEW
LVDRDIMWPLDTEAPWWLLTHYPQHNDVFSWLDGASLIAYVAATALVLGTGILASLALSVAVSGGWRTQRLHHLAQALIP
LAGCGVFLGLSALTVTLLKAEGFGMHWVNDARLALLAGANLWALHLARRILARWNGGLRRWIALLPFCGALALVDCAWGF
MFWWW

Sequences:

>Translated_485_residues
MKSGRAQRPPQRVIPIAAASGGGSCSPERQPRGLLALAGIWLRDHASLLRKLQWAVVLVYAFLLIVPACLSLPEDTARMW
NNLTIFAQFVFWGIWWPFVLLSMVLFGRLWCGVLCPEGALSEWAARKGMGRPIPRWMRWGGWPFVAFVLTTVYGQLVSVY
QYPKAALLVLGGSTVAAVAIGFVYTRGKRAWCRHLCPVNGVFGLLSKLAPLYYRVDEAAWKRSQSAHERTPAVDCAPLQP
LRHMQGGSGCHMCGRCSDHRGAIELSLRSSSDEVVRVAEKEADGWQTALIAYGLLGVAMGAFHWTVSPWFVALKQAAAEW
LVDRDIMWPLDTEAPWWLLTHYPQHNDVFSWLDGASLIAYVAATALVLGTGILASLALSVAVSGGWRTQRLHHLAQALIP
LAGCGVFLGLSALTVTLLKAEGFGMHWVNDARLALLAGANLWALHLARRILARWNGGLRRWIALLPFCGALALVDCAWGF
MFWWW
>Mature_485_residues
MKSGRAQRPPQRVIPIAAASGGGSCSPERQPRGLLALAGIWLRDHASLLRKLQWAVVLVYAFLLIVPACLSLPEDTARMW
NNLTIFAQFVFWGIWWPFVLLSMVLFGRLWCGVLCPEGALSEWAARKGMGRPIPRWMRWGGWPFVAFVLTTVYGQLVSVY
QYPKAALLVLGGSTVAAVAIGFVYTRGKRAWCRHLCPVNGVFGLLSKLAPLYYRVDEAAWKRSQSAHERTPAVDCAPLQP
LRHMQGGSGCHMCGRCSDHRGAIELSLRSSSDEVVRVAEKEADGWQTALIAYGLLGVAMGAFHWTVSPWFVALKQAAAEW
LVDRDIMWPLDTEAPWWLLTHYPQHNDVFSWLDGASLIAYVAATALVLGTGILASLALSVAVSGGWRTQRLHHLAQALIP
LAGCGVFLGLSALTVTLLKAEGFGMHWVNDARLALLAGANLWALHLARRILARWNGGLRRWIALLPFCGALALVDCAWGF
MFWWW

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53613; Mature: 53613

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSGRAQRPPQRVIPIAAASGGGSCSPERQPRGLLALAGIWLRDHASLLRKLQWAVVLVY
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLLIVPACLSLPEDTARMWNNLTIFAQFVFWGIWWPFVLLSMVLFGRLWCGVLCPEGAL
HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
SEWAARKGMGRPIPRWMRWGGWPFVAFVLTTVYGQLVSVYQYPKAALLVLGGSTVAAVAI
HHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
GFVYTRGKRAWCRHLCPVNGVFGLLSKLAPLYYRVDEAAWKRSQSAHERTPAVDCAPLQP
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCH
LRHMQGGSGCHMCGRCSDHRGAIELSLRSSSDEVVRVAEKEADGWQTALIAYGLLGVAMG
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AFHWTVSPWFVALKQAAAEWLVDRDIMWPLDTEAPWWLLTHYPQHNDVFSWLDGASLIAY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
VAATALVLGTGILASLALSVAVSGGWRTQRLHHLAQALIPLAGCGVFLGLSALTVTLLKA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGFGMHWVNDARLALLAGANLWALHLARRILARWNGGLRRWIALLPFCGALALVDCAWGF
CCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
MFWWW
HHHCC
>Mature Secondary Structure
MKSGRAQRPPQRVIPIAAASGGGSCSPERQPRGLLALAGIWLRDHASLLRKLQWAVVLVY
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLLIVPACLSLPEDTARMWNNLTIFAQFVFWGIWWPFVLLSMVLFGRLWCGVLCPEGAL
HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
SEWAARKGMGRPIPRWMRWGGWPFVAFVLTTVYGQLVSVYQYPKAALLVLGGSTVAAVAI
HHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
GFVYTRGKRAWCRHLCPVNGVFGLLSKLAPLYYRVDEAAWKRSQSAHERTPAVDCAPLQP
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCH
LRHMQGGSGCHMCGRCSDHRGAIELSLRSSSDEVVRVAEKEADGWQTALIAYGLLGVAMG
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AFHWTVSPWFVALKQAAAEWLVDRDIMWPLDTEAPWWLLTHYPQHNDVFSWLDGASLIAY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
VAATALVLGTGILASLALSVAVSGGWRTQRLHHLAQALIPLAGCGVFLGLSALTVTLLKA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGFGMHWVNDARLALLAGANLWALHLARRILARWNGGLRRWIALLPFCGALALVDCAWGF
CCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
MFWWW
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA