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The map label for this gene is yciR [C]

Identifier: 34495997

GI number: 34495997

Start: 578634

End: 580535

Strand: Reverse

Name: yciR [C]

Synonym: CV_0542

Alternate gene names: 34495997

Gene position: 580535-578634 (Counterclockwise)

Preceding gene: 34496003

Following gene: 34495992

Centisome position: 12.22

GC content: 68.24

Gene sequence:

>1902_bases
GTGTACCGCAACCAGGCCCTGCTGCAGACGCCGCAGCTGGCGGAGGCGCTGTTCCGCCACCCGGGCGGCGCCTACCCGCT
CACCTTCGAGACCCAGGACGGCGAGGGCGAATCCGAGCGCTACCTGGAAGTCACCGTCAACCAGCTCAACTACCAGGGCG
ACGCCTATCTGTGCGCCACCGCGCGCGACATCAGCGGCCGCCGCCAGACCGAGCGCCAGCTCAGGCTGGCGGCCCAGGTG
TTCGAATCCAGCAACGAGGCCATCCTGATCTCCGATCCGGACAACCGCATCCTCACCGTCAACCGCGCCTTCGGCCACAT
CACCGGCTACGGCGAGGCCGAAGTCCGCGGCAGCAAGGCCTCGATGCTGTTCTCCGACCGCCACGAGCCGGCCTTCTTCC
AGCAAATGTGGCAGACGCTGCAGCAGCGCGGCCAGTGGTCGGGCGAGATCTGGAACCGGCGCAAGAGCGGCGAGCACTTC
CCCTGCTGGGTCAACATCAGCGTGCTGCAGGACGGCCAGGGCGAGATCAGCCATTTCGTCGCGCTGTTCACCGACATCTC
CGAGCGCAAGGAGCAGGAGGCGCGGGTCCAGCACATGGCCGAGTACGACGCGCTGACCGACCTGCCCAACCGCGTGCTGG
TCAACGACCGCCTGCACCAGGCGATACGCCAGGCCGAACTGCAGCACAACCAGCTGGCGGTGCTGTTCGTCGACCTCGAC
CATTTCAAGAACATCAACGACACCCTGGGCCACTGCGCCGGCGACGAGCTGCTGAAGGAAGTGGCGCGGCGGCTGGCCGG
CGCGGTGCGCGGCCTAGACACCGTCGGCCGCACCGGCGGCGACGAGTTCGTGCTGATCCTGCCATCGATCAACCAGCCCG
GCGAGGCGGCGCAGATCGCCGAGCGCATCCTGCGCACCATCCAGCAGCCGTTCCAGATCGGCGAGCATTCGCTGGTGGTC
GGCTGCAGCATAGGCATCAGCCTGATGCCGGACGACGGCAGCGACATCCAGACCCTGCTGATGAACGCCGACCTGGCGAT
GTACCACGCCAAGGCGCACGGCCGGAACACCTTCCGCTTCTACACCCGCGAGATGAACACCCAGGTGGCCGAGCGGCTGC
TGATGGAGAACCGGCTGCGGCGCGCGATGGAGCAGGAGCAGCTCTACCTGGTCTACCAGCCGCAATACGATATGGCCGGC
CAGCGGCTGCTGGGCTGCGAGGCGCTGCTGCGCTGGCGCGACCCGGACGAAGGCTTGATCATGCCCGGCCGCTTCATCCC
GGTGGCCGAGGACACCGGCCTGATCGTGCCGCTGGGCCGCTGGGTGCTGGACCAGGCCTGCCGCCAGGCCAGCCTGTGGC
TGCGCGCCGGACTGGAGCCGATGCGGGTGGCGGTCAATGTGTCCGCCCATCAGCTGATGCGCCACGACTTCATCGACGAC
GTGCGCGAGGCGCTGCAGCGGCACGCGCTGCCCGGCCACTGCCTGGAGCTGGAGGTGACCGAGAGCACGCTGATGGCCGA
CGCCGACCTGGCCTCGCGCCAGCTGGCGGTGATCAAGGCGATGGGCGTGCGGCTGGCGATCGACGATTTCGGCACCGGCT
ACTCCAGCCTCGCCTACCTGAAGCGCTTCGCGCCGGACCTGGTGAAGATAGACCGCTCCTTCATCAGCGACCTGCCCGGC
GACGAGGAGAATGCCGCCATCGTCAGCGCCATCGTCCACCTGGCCGGCGCGCTGGGCATGGAAACGCTGGCCGAGGGCGT
AGAAAACGAGAACCAGCAGCGCTTCCTGCAGACGCTGGGCTGCGAGGCGATGCAGGGCTACCTGCTGGGCAGCCCGCTGG
CCGAGGAAATGATGACGCGGCGGCTGGAGCAGCAACAGCGGCGTCCCATGGCAACGGCCTAG

Upstream 100 bases:

>100_bases
CCTGTCGCTGAAGGAGCAGGCGCGGGAGTTGAGGCTCAGCCATTTCATGATCGACAACGCCACCGAACTGGTCGCGCTGC
GCGACAAGCAAGGCGAAGTG

Downstream 100 bases:

>100_bases
GCCGCTCAGCGCGGCGAAGCCAGCCAGCCGCCGACGGCCAATACCAGCAACACCAGCGCGGCGGCCGCGCCAACATCCAG
CAAGCGCGCCAGACCCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MYRNQALLQTPQLAEALFRHPGGAYPLTFETQDGEGESERYLEVTVNQLNYQGDAYLCATARDISGRRQTERQLRLAAQV
FESSNEAILISDPDNRILTVNRAFGHITGYGEAEVRGSKASMLFSDRHEPAFFQQMWQTLQQRGQWSGEIWNRRKSGEHF
PCWVNISVLQDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLD
HFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIAERILRTIQQPFQIGEHSLVV
GCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRFYTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAG
QRLLGCEALLRWRDPDEGLIMPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGLEPMRVAVNVSAHQLMRHDFIDD
VREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAIDDFGTGYSSLAYLKRFAPDLVKIDRSFISDLPG
DEENAAIVSAIVHLAGALGMETLAEGVENENQQRFLQTLGCEAMQGYLLGSPLAEEMMTRRLEQQQRRPMATA

Sequences:

>Translated_633_residues
MYRNQALLQTPQLAEALFRHPGGAYPLTFETQDGEGESERYLEVTVNQLNYQGDAYLCATARDISGRRQTERQLRLAAQV
FESSNEAILISDPDNRILTVNRAFGHITGYGEAEVRGSKASMLFSDRHEPAFFQQMWQTLQQRGQWSGEIWNRRKSGEHF
PCWVNISVLQDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLD
HFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIAERILRTIQQPFQIGEHSLVV
GCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRFYTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAG
QRLLGCEALLRWRDPDEGLIMPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGLEPMRVAVNVSAHQLMRHDFIDD
VREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAIDDFGTGYSSLAYLKRFAPDLVKIDRSFISDLPG
DEENAAIVSAIVHLAGALGMETLAEGVENENQQRFLQTLGCEAMQGYLLGSPLAEEMMTRRLEQQQRRPMATA
>Mature_633_residues
MYRNQALLQTPQLAEALFRHPGGAYPLTFETQDGEGESERYLEVTVNQLNYQGDAYLCATARDISGRRQTERQLRLAAQV
FESSNEAILISDPDNRILTVNRAFGHITGYGEAEVRGSKASMLFSDRHEPAFFQQMWQTLQQRGQWSGEIWNRRKSGEHF
PCWVNISVLQDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLD
HFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIAERILRTIQQPFQIGEHSLVV
GCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRFYTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAG
QRLLGCEALLRWRDPDEGLIMPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGLEPMRVAVNVSAHQLMRHDFIDD
VREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAIDDFGTGYSSLAYLKRFAPDLVKIDRSFISDLPG
DEENAAIVSAIVHLAGALGMETLAEGVENENQQRFLQTLGCEAMQGYLLGSPLAEEMMTRRLEQQQRRPMATA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=589, Percent_Identity=35.1443123938879, Blast_Score=339, Evalue=3e-94,
Organism=Escherichia coli, GI87081921, Length=485, Percent_Identity=32.3711340206186, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI226510982, Length=416, Percent_Identity=30.2884615384615, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1788502, Length=259, Percent_Identity=36.2934362934363, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=32.8125, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI87081980, Length=261, Percent_Identity=34.4827586206897, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=36.8, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1787055, Length=286, Percent_Identity=32.5174825174825, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=36.2139917695473, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788381, Length=541, Percent_Identity=24.9537892791128, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1786507, Length=262, Percent_Identity=30.5343511450382, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=30.5220883534137, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082096, Length=440, Percent_Identity=25.6818181818182, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081977, Length=191, Percent_Identity=32.4607329842932, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.9281437125749, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=33.9080459770115, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=34.5454545454545, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=35.4037267080745, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=36.2637362637363, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=33.75, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=33.9393939393939, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=31.3253012048193, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787410, Length=225, Percent_Identity=24, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=132, Percent_Identity=34.0909090909091, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 71293; Mature: 71293

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRNQALLQTPQLAEALFRHPGGAYPLTFETQDGEGESERYLEVTVNQLNYQGDAYLCAT
CCCCCHHHCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEHHCCCCCEEEEEE
ARDISGRRQTERQLRLAAQVFESSNEAILISDPDNRILTVNRAFGHITGYGEAEVRGSKA
CHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEECCCHH
SMLFSDRHEPAFFQQMWQTLQQRGQWSGEIWNRRKSGEHFPCWVNISVLQDGQGEISHFV
HHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHH
ALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEEHH
HFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIA
HCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
ERILRTIQQPFQIGEHSLVVGCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRF
HHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCHHHHHHHCCCHHHHHHHHCCCCCHHH
YTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAGQRLLGCEALLRWRDPDEGLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEE
MPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGLEPMRVAVNVSAHQLMRHDFIDD
CCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
VREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAIDDFGTGYSSLAYL
HHHHHHHCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHH
KRFAPDLVKIDRSFISDLPGDEENAAIVSAIVHLAGALGMETLAEGVENENQQRFLQTLG
HHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
CEAMQGYLLGSPLAEEMMTRRLEQQQRRPMATA
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYRNQALLQTPQLAEALFRHPGGAYPLTFETQDGEGESERYLEVTVNQLNYQGDAYLCAT
CCCCCHHHCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEHHCCCCCEEEEEE
ARDISGRRQTERQLRLAAQVFESSNEAILISDPDNRILTVNRAFGHITGYGEAEVRGSKA
CHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEECCCHH
SMLFSDRHEPAFFQQMWQTLQQRGQWSGEIWNRRKSGEHFPCWVNISVLQDGQGEISHFV
HHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHH
ALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEEHH
HFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIA
HCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
ERILRTIQQPFQIGEHSLVVGCSIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRF
HHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCHHHHHHHCCCHHHHHHHHCCCCCHHH
YTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAGQRLLGCEALLRWRDPDEGLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEE
MPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGLEPMRVAVNVSAHQLMRHDFIDD
CCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
VREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAIDDFGTGYSSLAYL
HHHHHHHCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHH
KRFAPDLVKIDRSFISDLPGDEENAAIVSAIVHLAGALGMETLAEGVENENQQRFLQTLG
HHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
CEAMQGYLLGSPLAEEMMTRRLEQQQRRPMATA
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]