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The map label for this gene is ydhP [H]

Identifier: 34495963

GI number: 34495963

Start: 534448

End: 535623

Strand: Reverse

Name: ydhP [H]

Synonym: CV_0508

Alternate gene names: 34495963

Gene position: 535623-534448 (Counterclockwise)

Preceding gene: 34495967

Following gene: 34495956

Centisome position: 11.27

GC content: 68.2

Gene sequence:

>1176_bases
ATGCCTGCTTCCCGCCTCTTCACTCCAGCGCTGTTGACGCTGGCGGTGGCCGCCTTCGCCATCGGCACCGCAGAATTCAT
CATCATGGGCTTGCTGCCCCTCATCGCCGCCGATTTGCATGTCGGCCTGCCGCGCGCCGGCTATCTGGTGGCCGGCTACG
CGCTGGGCGTGGTGGCCGGCGGCCCGCTGCTGGCGGGCCTGATCGCCCGCCAGGACGAAAAACGCGCGCTGAGCGCGCTG
ATGGCCATCTTCATCGCCGGCAACCTGGCCTGCTTGCTGGCATCCAGCCTGTGGCCGCTTTTGCTGGCGCGCATATTCAC
AGCCCTCTGCCACGCCAGCTTCATCGGCGCGGCGGCGGTGATGGCGGCTCGCCTGGCCCCGCCCGGCATGGCCGGCCGGG
CGATGGCGCTGATGTTCAGCGGCATGACGCTGGCCAATGTGCTGGGCGTGCCGGCCGGCACGTGGCTCGGGCAAACAGCC
GGTTGGCGCGCGACCTTCGCCGCAGTGGCGGCGCTAGGCTTGATCACTCTGTTGCTGATCCGCTGGCTGTTGCCGACGCG
CTCCGGCGAGCGCGGCAGCGCCGAAACGCCAGCGCGTTTGCCGGGTCGGGTCTGGCTGGCGCTGCTCGCCAGCGCGCTGG
CCGCCGCCAGCATGTTCGCCTTTTTCACCTACCTGGTGCCGACGCTGATCCAGTTCGGCGGCCTGCCTCCTGAGCACTCC
AGCGCGGCTCTGTTGTTATGCGGCGCGGGCCTGGTGGCGGGAGGCTGGATAGGCGGAAGGCTGGCGGACGGGAAACTGGT
CAGGGCGCTGATCCTGACGCTGGTCTTGCTATGCGGCAACCTGGCCGCTTTCCACCTGCTGGCTGCGCGCCTGCCCATCG
CGTTGGCGCTGATGACGCTATGGGGCGGCCAGGCCTTCGCCCTGTGCATGCTGCTGCAAGCACTGGCGATACGGCTGGCG
GGAGAGGCCACATCGCGGGCATCCGCTTTCAATGTCGGCGCCTTCAATCTGGGCAATGCGCTGGGCGCTTGGCTGGCGGG
TTTGCTACTCGGTCACGGCGGAACCTTGGCGCAAACCAGTCTACTGGCCGCAGGGTTGGCGGCGCTGACTTTACTGCCGG
TGCTGTTTGTTTGGCGCAAGAAAGCCGTCGACGCATCCTCGCTTGTCCGCGCATGA

Upstream 100 bases:

>100_bases
ATTCATGCCAAATGGTTCCGCACAGAGTGGAGCGGCGACCGGCTGTTTCCGGCCATTGCCGTCGCTTAGGCTGGCGCTTT
GCTTTCACGCTGAGATCGTC

Downstream 100 bases:

>100_bases
AACAACGGACCGCGCGGCGGCGGTCCGTTCAGGCAGGATGAAAAATCAGGCGGCCAGCTGCGTCGCCAGCGCCCGCATCG
TCTGCCATGGCTCGCCGGGC

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPASRLFTPALLTLAVAAFAIGTAEFIIMGLLPLIAADLHVGLPRAGYLVAGYALGVVAGGPLLAGLIARQDEKRALSAL
MAIFIAGNLACLLASSLWPLLLARIFTALCHASFIGAAAVMAARLAPPGMAGRAMALMFSGMTLANVLGVPAGTWLGQTA
GWRATFAAVAALGLITLLLIRWLLPTRSGERGSAETPARLPGRVWLALLASALAAASMFAFFTYLVPTLIQFGGLPPEHS
SAALLLCGAGLVAGGWIGGRLADGKLVRALILTLVLLCGNLAAFHLLAARLPIALALMTLWGGQAFALCMLLQALAIRLA
GEATSRASAFNVGAFNLGNALGAWLAGLLLGHGGTLAQTSLLAAGLAALTLLPVLFVWRKKAVDASSLVRA

Sequences:

>Translated_391_residues
MPASRLFTPALLTLAVAAFAIGTAEFIIMGLLPLIAADLHVGLPRAGYLVAGYALGVVAGGPLLAGLIARQDEKRALSAL
MAIFIAGNLACLLASSLWPLLLARIFTALCHASFIGAAAVMAARLAPPGMAGRAMALMFSGMTLANVLGVPAGTWLGQTA
GWRATFAAVAALGLITLLLIRWLLPTRSGERGSAETPARLPGRVWLALLASALAAASMFAFFTYLVPTLIQFGGLPPEHS
SAALLLCGAGLVAGGWIGGRLADGKLVRALILTLVLLCGNLAAFHLLAARLPIALALMTLWGGQAFALCMLLQALAIRLA
GEATSRASAFNVGAFNLGNALGAWLAGLLLGHGGTLAQTSLLAAGLAALTLLPVLFVWRKKAVDASSLVRA
>Mature_390_residues
PASRLFTPALLTLAVAAFAIGTAEFIIMGLLPLIAADLHVGLPRAGYLVAGYALGVVAGGPLLAGLIARQDEKRALSALM
AIFIAGNLACLLASSLWPLLLARIFTALCHASFIGAAAVMAARLAPPGMAGRAMALMFSGMTLANVLGVPAGTWLGQTAG
WRATFAAVAALGLITLLLIRWLLPTRSGERGSAETPARLPGRVWLALLASALAAASMFAFFTYLVPTLIQFGGLPPEHSS
AALLLCGAGLVAGGWIGGRLADGKLVRALILTLVLLCGNLAAFHLLAARLPIALALMTLWGGQAFALCMLLQALAIRLAG
EATSRASAFNVGAFNLGNALGAWLAGLLLGHGGTLAQTSLLAAGLAALTLLPVLFVWRKKAVDASSLVRA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=375, Percent_Identity=40.5333333333333, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786595, Length=391, Percent_Identity=30.9462915601023, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787808, Length=339, Percent_Identity=35.1032448377581, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693198, Length=345, Percent_Identity=28.4057971014493, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 39963; Mature: 39831

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASRLFTPALLTLAVAAFAIGTAEFIIMGLLPLIAADLHVGLPRAGYLVAGYALGVVAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
GPLLAGLIARQDEKRALSALMAIFIAGNLACLLASSLWPLLLARIFTALCHASFIGAAAV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAARLAPPGMAGRAMALMFSGMTLANVLGVPAGTWLGQTAGWRATFAAVAALGLITLLLI
HHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RWLLPTRSGERGSAETPARLPGRVWLALLASALAAASMFAFFTYLVPTLIQFGGLPPEHS
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SAALLLCGAGLVAGGWIGGRLADGKLVRALILTLVLLCGNLAAFHLLAARLPIALALMTL
CCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGGQAFALCMLLQALAIRLAGEATSRASAFNVGAFNLGNALGAWLAGLLLGHGGTLAQTS
HCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LLAAGLAALTLLPVLFVWRKKAVDASSLVRA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure 
PASRLFTPALLTLAVAAFAIGTAEFIIMGLLPLIAADLHVGLPRAGYLVAGYALGVVAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
GPLLAGLIARQDEKRALSALMAIFIAGNLACLLASSLWPLLLARIFTALCHASFIGAAAV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAARLAPPGMAGRAMALMFSGMTLANVLGVPAGTWLGQTAGWRATFAAVAALGLITLLLI
HHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RWLLPTRSGERGSAETPARLPGRVWLALLASALAAASMFAFFTYLVPTLIQFGGLPPEHS
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SAALLLCGAGLVAGGWIGGRLADGKLVRALILTLVLLCGNLAAFHLLAARLPIALALMTL
CCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGGQAFALCMLLQALAIRLAGEATSRASAFNVGAFNLGNALGAWLAGLLLGHGGTLAQTS
HCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LLAAGLAALTLLPVLFVWRKKAVDASSLVRA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]