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The map label for this gene is desC

Identifier: 33864438

GI number: 33864438

Start: 2300938

End: 2301717

Strand: Direct

Name: desC

Synonym: PMT2174

Alternate gene names: NA

Gene position: 2300938-2301717 (Clockwise)

Preceding gene: 33864436

Following gene: 33864439

Centisome position: 95.44

GC content: 58.85

Gene sequence:

>780_bases
ATGATCGCCATTCATGCCCTATCCATCCTGGCCCTGTTGCCCCGTTTCTGGAGCTGGCAAGCGATCACAACCCTTCTCGT
CCTCTACTGGGTCACGGCCTGCCTCGGCGTGACGATCGGCTACCACCGTCTGCTCTCACACCGGTCTTTCCGAGTACCCC
ACTGGCTGGAGCGCTTCTTTGCCACCTGCGGAACCTTGAGCTGCCAACACGGTCCAATCGACTGGGTAGGACTCCATCGC
CACCATCACAAGTTTTCCGATACTGACCCCGACCACCACAACAGTCATAAGGGCTTCTGGTGGAGCCACATGGGCTGGAT
GTTTGAACCCATTCCAGCCATGCGGGTCGTGCCACGCCTCACTGTTGACCTGGCAGCGGATCCCTATTACCGCTGGCTTA
ACAAGTACTTTCTACTGTTGCAGCTCCCGCTAGCCGGTTTGCTCTTCTGGATCGGCAGCGTCAGTGGAGCCGGTGGTTTG
GCCCTCGTGCTGTGGGGTATCCCCTTGCGCCTAACGATCGTGTATCACATCACCTGGCTGGTCAATTCCGCCAGTCACTG
CTGGGGGACTGTGGCCTTCGACAGCGGTGACAACTCCCGCAACAACCCTTGGGTAGCAGCTCTTACTTTTGGCGAAGGTT
GGCACAACAACCACCACGCCTTCCCGCACTCCGCCATTCATGGACTCCAGCGCGGTCAGATCGACCTCACCTGGCAGCAC
ATCCGCCTCATGCGAGCCCTAGGCTTGGCTCGCAAGATCCGGCTACCGATCACATCGTAA

Upstream 100 bases:

>100_bases
GCATAAGGCCTCAAGCCTTTCTACAAATCTTCAGCGCTCCTACACAAGCCAGGCCATTTGCCCACCTAAAGAATCAAGAC
GCTGGGGAACGATCGGATTC

Downstream 100 bases:

>100_bases
GGTTGTCGATCGCTAAACAGTCGTCGTCCGTCTTCTTATCGCCATGGCCAAGCGCGTACAAGTCGTCCTGAACGAAGACG
TCCTCAGCCTCGGCAAGGAC

Product: Fatty acid desaturase, type 1

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Fatty Acid Desaturase Subfamily; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Fatty Acid Desaturase Protein; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MIAIHALSILALLPRFWSWQAITTLLVLYWVTACLGVTIGYHRLLSHRSFRVPHWLERFFATCGTLSCQHGPIDWVGLHR
HHHKFSDTDPDHHNSHKGFWWSHMGWMFEPIPAMRVVPRLTVDLAADPYYRWLNKYFLLLQLPLAGLLFWIGSVSGAGGL
ALVLWGIPLRLTIVYHITWLVNSASHCWGTVAFDSGDNSRNNPWVAALTFGEGWHNNHHAFPHSAIHGLQRGQIDLTWQH
IRLMRALGLARKIRLPITS

Sequences:

>Translated_259_residues
MIAIHALSILALLPRFWSWQAITTLLVLYWVTACLGVTIGYHRLLSHRSFRVPHWLERFFATCGTLSCQHGPIDWVGLHR
HHHKFSDTDPDHHNSHKGFWWSHMGWMFEPIPAMRVVPRLTVDLAADPYYRWLNKYFLLLQLPLAGLLFWIGSVSGAGGL
ALVLWGIPLRLTIVYHITWLVNSASHCWGTVAFDSGDNSRNNPWVAALTFGEGWHNNHHAFPHSAIHGLQRGQIDLTWQH
IRLMRALGLARKIRLPITS
>Mature_259_residues
MIAIHALSILALLPRFWSWQAITTLLVLYWVTACLGVTIGYHRLLSHRSFRVPHWLERFFATCGTLSCQHGPIDWVGLHR
HHHKFSDTDPDHHNSHKGFWWSHMGWMFEPIPAMRVVPRLTVDLAADPYYRWLNKYFLLLQLPLAGLLFWIGSVSGAGGL
ALVLWGIPLRLTIVYHITWLVNSASHCWGTVAFDSGDNSRNNPWVAALTFGEGWHNNHHAFPHSAIHGLQRGQIDLTWQH
IRLMRALGLARKIRLPITS

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI148596961, Length=205, Percent_Identity=39.5121951219512, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI53759151, Length=257, Percent_Identity=34.2412451361868, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI148596938, Length=107, Percent_Identity=42.0560747663551, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561776, Length=217, Percent_Identity=30.8755760368664, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17540878, Length=213, Percent_Identity=31.924882629108, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17561774, Length=203, Percent_Identity=31.5270935960591, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321383, Length=236, Percent_Identity=33.4745762711864, Blast_Score=117, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24646500, Length=228, Percent_Identity=33.7719298245614, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI24646303, Length=211, Percent_Identity=36.0189573459716, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646299, Length=211, Percent_Identity=36.0189573459716, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646305, Length=211, Percent_Identity=36.0189573459716, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646301, Length=211, Percent_Identity=36.0189573459716, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646297, Length=211, Percent_Identity=36.0189573459716, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646295, Length=231, Percent_Identity=34.1991341991342, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI21358571, Length=196, Percent_Identity=36.734693877551, Blast_Score=118, Evalue=5e-27,
Organism=Drosophila melanogaster, GI21358573, Length=238, Percent_Identity=33.6134453781513, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24662393, Length=248, Percent_Identity=31.4516129032258, Blast_Score=105, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29714; Mature: 29714

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAIHALSILALLPRFWSWQAITTLLVLYWVTACLGVTIGYHRLLSHRSFRVPHWLERFF
CEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ATCGTLSCQHGPIDWVGLHRHHHKFSDTDPDHHNSHKGFWWSHMGWMFEPIPAMRVVPRL
HHHCCCCCCCCCCCEEECHHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHHHH
TVDLAADPYYRWLNKYFLLLQLPLAGLLFWIGSVSGAGGLALVLWGIPLRLTIVYHITWL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH
VNSASHCWGTVAFDSGDNSRNNPWVAALTFGEGWHNNHHAFPHSAIHGLQRGQIDLTWQH
HCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEHHHH
IRLMRALGLARKIRLPITS
HHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MIAIHALSILALLPRFWSWQAITTLLVLYWVTACLGVTIGYHRLLSHRSFRVPHWLERFF
CEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ATCGTLSCQHGPIDWVGLHRHHHKFSDTDPDHHNSHKGFWWSHMGWMFEPIPAMRVVPRL
HHHCCCCCCCCCCCEEECHHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCHHHHHHHH
TVDLAADPYYRWLNKYFLLLQLPLAGLLFWIGSVSGAGGLALVLWGIPLRLTIVYHITWL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH
VNSASHCWGTVAFDSGDNSRNNPWVAALTFGEGWHNNHHAFPHSAIHGLQRGQIDLTWQH
HCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEHHHH
IRLMRALGLARKIRLPITS
HHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA