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The map label for this gene is desC

Identifier: 33864436

GI number: 33864436

Start: 2299082

End: 2300002

Strand: Direct

Name: desC

Synonym: PMT2172

Alternate gene names: NA

Gene position: 2299082-2300002 (Clockwise)

Preceding gene: 33864431

Following gene: 33864438

Centisome position: 95.36

GC content: 58.31

Gene sequence:

>921_bases
TTGGTTTCCCCTCTTCCGGTCTCTTCAGCCACAAACCGTCAGCAACGTTTGTGGGCTGCTGTAAAGGCTCATCGTGAGCC
ACTACCAGCAAAACAACGTCGATTCAAATGGGGCACCACCAGTTTCATGCTGGCCATGCATGTAGCAGCAACCTTCGCAC
TGCTACCACGCTTTTGGAGCTGGCAAGGGTTGGTCGCTTTTGCCGTTCTTTATTGGACCACGGTGCTCGGGGTGACCTTG
GGATTACATCGACTGGTCGCTCATCGCAGCTTTGTCGTACCCGTTTGGCTGGAGAGGATTCTGGTGATCATGGCCACGCT
TGCCTGCCAGAGTGGCCCCATCGAATGGGTGGCTCTGCATCGCCACCATCACCGCTACTCCGACCAAACCAATGACCACC
ACGACGCCGGCCGTGGCCTCTGGTGGGCCCACAGTGAATGGATGCTGCATGAGATTCCAGCGCTGGATCACATGGACCGC
TTTGCAGGAGATCTGCTAGCCGACCCTTTCTTCCGATGGCTTGATCGCTGGTTCCTGCTGCTACAGATCCCTCTCGGTCT
TGGGCTCTACTGGTACGGAGAAGTCGCCCAGGTGCACGGTGGAGGACTTGGCCTGGTGCTCTGGGCCATCCCCCTGCGAC
TGGTGGTTGTGTACCACGTGACCTGGTTTGTGAACTCGGCGACCCATGCATTTGGCTACCGCAACTTCGACAGCCCAGAC
CTCTCTCGCAACTGCTGGTGGGTGGCGGTGCTGTCCTTCGGCGAGGGTTGGCACAACAATCACCATGCTTATCCCTCCAG
CGCCCGTCATGGCCTGCGATGGTTTGAATTCGACATCACCTGGCAACACGTGAAGGCGTTGCGTCGTCTTGGCCTGGCTC
GTCGAGTCCAGCAAGCCCGCTATGTTTCCGGGGCTTCCTGA

Upstream 100 bases:

>100_bases
GAAACGGTTCCATAGTTCCTTTAGATTTGAACATGTCTCGGCCCTTTCCGCTCCACTCGCCTTACAAGCCAAGCGGCCGA
CCCATCCAAAGGAGTACCTC

Downstream 100 bases:

>100_bases
TCAACCAACAACTCTGAGCGGGCCCTGAGATCATCCAAAAACCCCTCTGCTCCCTGTCTGTTCACTCCACCCAAGGCCAC
CTGAGTTGCGTGCAGATCAA

Product: Fatty acid desaturase, type 1

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Subfamily; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase; Fatty Acid Desaturase Family Protein; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Stearoyl-CoA Desaturase Oxidoreductase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase; Stearoyl-CoA Desaturase Oxidoreductase Protein; Fatty Acid Desaturase Protein

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MVSPLPVSSATNRQQRLWAAVKAHREPLPAKQRRFKWGTTSFMLAMHVAATFALLPRFWSWQGLVAFAVLYWTTVLGVTL
GLHRLVAHRSFVVPVWLERILVIMATLACQSGPIEWVALHRHHHRYSDQTNDHHDAGRGLWWAHSEWMLHEIPALDHMDR
FAGDLLADPFFRWLDRWFLLLQIPLGLGLYWYGEVAQVHGGGLGLVLWAIPLRLVVVYHVTWFVNSATHAFGYRNFDSPD
LSRNCWWVAVLSFGEGWHNNHHAYPSSARHGLRWFEFDITWQHVKALRRLGLARRVQQARYVSGAS

Sequences:

>Translated_306_residues
MVSPLPVSSATNRQQRLWAAVKAHREPLPAKQRRFKWGTTSFMLAMHVAATFALLPRFWSWQGLVAFAVLYWTTVLGVTL
GLHRLVAHRSFVVPVWLERILVIMATLACQSGPIEWVALHRHHHRYSDQTNDHHDAGRGLWWAHSEWMLHEIPALDHMDR
FAGDLLADPFFRWLDRWFLLLQIPLGLGLYWYGEVAQVHGGGLGLVLWAIPLRLVVVYHVTWFVNSATHAFGYRNFDSPD
LSRNCWWVAVLSFGEGWHNNHHAYPSSARHGLRWFEFDITWQHVKALRRLGLARRVQQARYVSGAS
>Mature_306_residues
MVSPLPVSSATNRQQRLWAAVKAHREPLPAKQRRFKWGTTSFMLAMHVAATFALLPRFWSWQGLVAFAVLYWTTVLGVTL
GLHRLVAHRSFVVPVWLERILVIMATLACQSGPIEWVALHRHHHRYSDQTNDHHDAGRGLWWAHSEWMLHEIPALDHMDR
FAGDLLADPFFRWLDRWFLLLQIPLGLGLYWYGEVAQVHGGGLGLVLWAIPLRLVVVYHVTWFVNSATHAFGYRNFDSPD
LSRNCWWVAVLSFGEGWHNNHHAYPSSARHGLRWFEFDITWQHVKALRRLGLARRVQQARYVSGAS

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=287, Percent_Identity=30.3135888501742, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI148596961, Length=301, Percent_Identity=27.906976744186, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI148596938, Length=147, Percent_Identity=31.2925170068027, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561776, Length=260, Percent_Identity=28.8461538461538, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17540878, Length=242, Percent_Identity=28.9256198347107, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17561774, Length=244, Percent_Identity=27.4590163934426, Blast_Score=96, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321383, Length=239, Percent_Identity=29.7071129707113, Blast_Score=114, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24646303, Length=249, Percent_Identity=34.5381526104418, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646299, Length=249, Percent_Identity=34.5381526104418, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646305, Length=249, Percent_Identity=34.5381526104418, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646301, Length=249, Percent_Identity=34.5381526104418, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646297, Length=249, Percent_Identity=34.5381526104418, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646295, Length=278, Percent_Identity=30.9352517985612, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24662393, Length=293, Percent_Identity=27.6450511945392, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI21358571, Length=248, Percent_Identity=30.6451612903226, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646500, Length=297, Percent_Identity=25.5892255892256, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21358573, Length=271, Percent_Identity=26.9372693726937, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35440; Mature: 35440

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCC
>Mature Secondary Structure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HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA