| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is crp1 [C]
Identifier: 33864415
GI number: 33864415
Start: 2269360
End: 2270055
Strand: Reverse
Name: crp1 [C]
Synonym: PMT2151
Alternate gene names: 33864415
Gene position: 2270055-2269360 (Counterclockwise)
Preceding gene: 33864421
Following gene: 33864412
Centisome position: 94.16
GC content: 53.02
Gene sequence:
>696_bases ATGGCTGTTTTTAGCGTTCAGCAGTTGCAGGCTGTGCAATTTTTTTCGGCTTTAACAACGGATGATTGTGAGCAATTATT GGATCGCCATCTTGAGTCCAGTCACGGTGCTGACCAGGTTTTCGTGATGGAGCAAGACTGGGGTGAATCGGTTTTTCTGT TGTGCTCAGGCATGGCCAAAGTTCGCAGTTATACGGCTGATGGCGATGAAGTTGTGATGTCAGTGTTGGGGGAGGGGGAC CTGTTTGGTGAGATGGCTGTTCTTGATGCCGCACCCAGGTCTGCTGATGTTGTGGCCTTAACGCCAGTGAAACTTTTGAA GATGAGAGCGTCGCCTTTTGTGACTTTGCTGCGCAAGGAAGTGGGCTTTGCGATTGCCCTTGCTCAGCTTGAGGCATCTC GCTTGCGGGATCTCAATCAGCGTTTTGCAATCCAGACCAGTGATGCCACGACGCGCTTACTCAATGCATTGGCTTACTTG GCTCGCAAGAGTTCTTCTGCTGATGATCCCAAAGTGGCGATTCCGCCGTTAGCTCAAAGGGAGTTGGGTCTCATGGCAGG TTTGTCCAGGGAGACTGCCTCCCGGACATTGAGCAAGCTGCGCAGTCGTGGAACACTGGAGGAGGTCGAAGGCTGCCTGC GTTTGGTGGATCTGCAGCCGCTCGTTAAACGAGGCCTGTTGCCGCTTGGCGCTTAG
Upstream 100 bases:
>100_bases TAGTGTGTGAGTGAAGGTTGACTAATGTGCAAATAATTGATTCATATTGAAGAGTGATTTAGGGGTTGCATTATTGTTCA ATAACTAAAAATAATGAAAC
Downstream 100 bases:
>100_bases AGCTTTTGAGCACGGTTACGGGTTGAATTGACCAGCCAGAATCGTCTTGGATTTAGGAGTCTTTGGACAGCTTTCAGAAA AACAAGTTGCTGATCTCGAG
Product: GntR family regulatory protein
Products: NA
Alternate protein names: Crp/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Crp Family Transcriptional Regulator; Catabolite Gene Activator; CAMP-Dependent Transcriptional Regulator; Transcriptional Regulator Crp/Fnr Family Protein; Cyclic AMP Receptor Protein; Catabolite Gene Activator Protein; Regulatory Protein; Transcriptional Regulatory Protein Crp Family; CAMP Receptor Protein; CAMP-Dependent Protein Kinase
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MAVFSVQQLQAVQFFSALTTDDCEQLLDRHLESSHGADQVFVMEQDWGESVFLLCSGMAKVRSYTADGDEVVMSVLGEGD LFGEMAVLDAAPRSADVVALTPVKLLKMRASPFVTLLRKEVGFAIALAQLEASRLRDLNQRFAIQTSDATTRLLNALAYL ARKSSSADDPKVAIPPLAQRELGLMAGLSRETASRTLSKLRSRGTLEEVEGCLRLVDLQPLVKRGLLPLGA
Sequences:
>Translated_231_residues MAVFSVQQLQAVQFFSALTTDDCEQLLDRHLESSHGADQVFVMEQDWGESVFLLCSGMAKVRSYTADGDEVVMSVLGEGD LFGEMAVLDAAPRSADVVALTPVKLLKMRASPFVTLLRKEVGFAIALAQLEASRLRDLNQRFAIQTSDATTRLLNALAYL ARKSSSADDPKVAIPPLAQRELGLMAGLSRETASRTLSKLRSRGTLEEVEGCLRLVDLQPLVKRGLLPLGA >Mature_230_residues AVFSVQQLQAVQFFSALTTDDCEQLLDRHLESSHGADQVFVMEQDWGESVFLLCSGMAKVRSYTADGDEVVMSVLGEGDL FGEMAVLDAAPRSADVVALTPVKLLKMRASPFVTLLRKEVGFAIALAQLEASRLRDLNQRFAIQTSDATTRLLNALAYLA RKSSSADDPKVAIPPLAQRELGLMAGLSRETASRTLSKLRSRGTLEEVEGCLRLVDLQPLVKRGLLPLGA
Specific function: This Protein Complexes With Cyclic AMP And Binds To Specific DNA Sites Near The Promoter To Regulate The Transcription Of Several Catabolite-Sensitive Operons. The Protein Induces A Severe Bend In The DNA. Acts As A Negative Regulator Of Its Own Synthesi
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25108; Mature: 24977
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVFSVQQLQAVQFFSALTTDDCEQLLDRHLESSHGADQVFVMEQDWGESVFLLCSGMAK CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH VRSYTADGDEVVMSVLGEGDLFGEMAVLDAAPRSADVVALTPVKLLKMRASPFVTLLRKE HHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHHH VGFAIALAQLEASRLRDLNQRFAIQTSDATTRLLNALAYLARKSSSADDPKVAIPPLAQR HHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHH ELGLMAGLSRETASRTLSKLRSRGTLEEVEGCLRLVDLQPLVKRGLLPLGA HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AVFSVQQLQAVQFFSALTTDDCEQLLDRHLESSHGADQVFVMEQDWGESVFLLCSGMAK CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH VRSYTADGDEVVMSVLGEGDLFGEMAVLDAAPRSADVVALTPVKLLKMRASPFVTLLRKE HHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHHH VGFAIALAQLEASRLRDLNQRFAIQTSDATTRLLNALAYLARKSSSADDPKVAIPPLAQR HHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHH ELGLMAGLSRETASRTLSKLRSRGTLEEVEGCLRLVDLQPLVKRGLLPLGA HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA