| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33864408
Identifier: 33864408
GI number: 33864408
Start: 2258061
End: 2259185
Strand: Direct
Name: 33864408
Synonym: PMT2144
Alternate gene names: NA
Gene position: 2258061-2259185 (Clockwise)
Preceding gene: 33864407
Following gene: 33864409
Centisome position: 93.66
GC content: 47.11
Gene sequence:
>1125_bases ATGAGCCTGTTTCGAAAAAATGCTCTAGATGCATTATCCAGCCCTGAACAACTAGACCAGCCTCTTGAATTGCTCAGACC AAGTTACTGGCTTTTACTGATCTCACTATTGGGGTTCAGTCTGAGCATTCTGCTGTGGTCAATATTTGGCCGTTTACCCG TAAGAATCGAAGGACGTGGCGTCTTAGTTAGAACAGAAAACTTACAGTGGGTTCAAAGCGAAATTAATGGCCGCCTCAAA GAATTCAAGGTTAATGTGGGGGATTGCATCAAGCAAGGAACACCTCTTGCCGTCATTGACCCAGTGCAATTAGAGCTAGA ACAACAAAAAGCAAACAACCAGCTTGAGATTCTAATCGCCAATGATGCAAGTTTAGACCTCATTGCTATCCAACGGGAAG ATGAGCTCAGGAAAAGCACAGCACGCTGGAAATTGGCATTTCAAAAGAATGCGGTGAGTCAAGTCGAATGGGATCAAAGA GTCCAACGACTCTCTGAGCTGTTATACAACCTAGAGACAAGTAACAACCAACGTGAACAATTAATTATTCAGAAACAAAG CGAAATTGTTGCCCTAGAACAACAAATTGCACGAACAGCAACCGTGAAAGCACCTCAAGCAGGCTGTGTCACCGACCGCC ATGTCCAATTAGGGCAAGTGGTGCAACCAGGCGTCACACTGTTTGAACTTGAGCGAGACAAAGACGCCAATACGCTTCAA AGCCTGGCCTTCTTCCCAGCAAAAGATGGTAAACGCCTTCGTATCGGTCAACCAGTTCGCGTGACACCAACAACGACCAA AGCACAACGCCATGGTGGCATCGAAGCTGAAATCCTCAAAGTGCGTCGTTTACCAGTCAGCAAAGAGGCCGTCATCAATC GGCTCTACAACAAAGAATCACTGTTCAAGGCCATAAATACCGAAGACGAAGGTCCACTGATCGAAGTCGCCACGTCCTTA GCCAAAGACCCAACAACACCTAGCGGTTATGACTGGGGCGGCAGCAAAGGACCAGACCTACAGCTCACAGCAGGCACACC AACAACGCTGAGAGTGCTTGTAGAGCAAAGGCGACCAATCAGCTATGTGATCCCTCTATTGAGAAATCTCAGTGGGATCT ACTGA
Upstream 100 bases:
>100_bases TTATTGTGCTGGAGAAAGGTCAAGTCCAGCAACAAGGCACATTCGAAAGTCTGATGAATGAAGCTGGGCTATTTGCCCGC TTAATGGAGAGGCAGGTTGC
Downstream 100 bases:
>100_bases GGGATATAAGACATGAACCTGCAGCCTTTCTGTCGTCAACTCTGGATCCGCATCCAAGCTCGTCTCAGCAAGCAGTGGGT ACGTACCCCAACATTGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Fusion Protein; Secretion Protein HlyD Family Protein; Type I Secretion Adaptor Protein; RND Membrane Fusion Protein; Chromosome Segregation ATPase-Like Protein; Multidrug Resistance Efflux Pump
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSLFRKNALDALSSPEQLDQPLELLRPSYWLLLISLLGFSLSILLWSIFGRLPVRIEGRGVLVRTENLQWVQSEINGRLK EFKVNVGDCIKQGTPLAVIDPVQLELEQQKANNQLEILIANDASLDLIAIQREDELRKSTARWKLAFQKNAVSQVEWDQR VQRLSELLYNLETSNNQREQLIIQKQSEIVALEQQIARTATVKAPQAGCVTDRHVQLGQVVQPGVTLFELERDKDANTLQ SLAFFPAKDGKRLRIGQPVRVTPTTTKAQRHGGIEAEILKVRRLPVSKEAVINRLYNKESLFKAINTEDEGPLIEVATSL AKDPTTPSGYDWGGSKGPDLQLTAGTPTTLRVLVEQRRPISYVIPLLRNLSGIY
Sequences:
>Translated_374_residues MSLFRKNALDALSSPEQLDQPLELLRPSYWLLLISLLGFSLSILLWSIFGRLPVRIEGRGVLVRTENLQWVQSEINGRLK EFKVNVGDCIKQGTPLAVIDPVQLELEQQKANNQLEILIANDASLDLIAIQREDELRKSTARWKLAFQKNAVSQVEWDQR VQRLSELLYNLETSNNQREQLIIQKQSEIVALEQQIARTATVKAPQAGCVTDRHVQLGQVVQPGVTLFELERDKDANTLQ SLAFFPAKDGKRLRIGQPVRVTPTTTKAQRHGGIEAEILKVRRLPVSKEAVINRLYNKESLFKAINTEDEGPLIEVATSL AKDPTTPSGYDWGGSKGPDLQLTAGTPTTLRVLVEQRRPISYVIPLLRNLSGIY >Mature_373_residues SLFRKNALDALSSPEQLDQPLELLRPSYWLLLISLLGFSLSILLWSIFGRLPVRIEGRGVLVRTENLQWVQSEINGRLKE FKVNVGDCIKQGTPLAVIDPVQLELEQQKANNQLEILIANDASLDLIAIQREDELRKSTARWKLAFQKNAVSQVEWDQRV QRLSELLYNLETSNNQREQLIIQKQSEIVALEQQIARTATVKAPQAGCVTDRHVQLGQVVQPGVTLFELERDKDANTLQS LAFFPAKDGKRLRIGQPVRVTPTTTKAQRHGGIEAEILKVRRLPVSKEAVINRLYNKESLFKAINTEDEGPLIEVATSLA KDPTTPSGYDWGGSKGPDLQLTAGTPTTLRVLVEQRRPISYVIPLLRNLSGIY
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42037; Mature: 41906
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFRKNALDALSSPEQLDQPLELLRPSYWLLLISLLGFSLSILLWSIFGRLPVRIEGRG CCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCE VLVRTENLQWVQSEINGRLKEFKVNVGDCIKQGTPLAVIDPVQLELEQQKANNQLEILIA EEEEECCHHHHHHHHCCCHHEEECCHHHHHHCCCCEEEECHHHHHHHHHCCCCEEEEEEE NDASLDLIAIQREDELRKSTARWKLAFQKNAVSQVEWDQRVQRLSELLYNLETSNNQREQ CCCCEEEEEECCHHHHHHHHHHEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LIIQKQSEIVALEQQIARTATVKAPQAGCVTDRHVQLGQVVQPGVTLFELERDKDANTLQ HEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHH SLAFFPAKDGKRLRIGQPVRVTPTTTKAQRHGGIEAEILKVRRLPVSKEAVINRLYNKES HHHHCCCCCCCEEECCCCEEECCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCHHH LFKAINTEDEGPLIEVATSLAKDPTTPSGYDWGGSKGPDLQLTAGTPTTLRVLVEQRRPI HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCH SYVIPLLRNLSGIY HHHHHHHHHHCCCC >Mature Secondary Structure SLFRKNALDALSSPEQLDQPLELLRPSYWLLLISLLGFSLSILLWSIFGRLPVRIEGRG CCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCE VLVRTENLQWVQSEINGRLKEFKVNVGDCIKQGTPLAVIDPVQLELEQQKANNQLEILIA EEEEECCHHHHHHHHCCCHHEEECCHHHHHHCCCCEEEECHHHHHHHHHCCCCEEEEEEE NDASLDLIAIQREDELRKSTARWKLAFQKNAVSQVEWDQRVQRLSELLYNLETSNNQREQ CCCCEEEEEECCHHHHHHHHHHEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LIIQKQSEIVALEQQIARTATVKAPQAGCVTDRHVQLGQVVQPGVTLFELERDKDANTLQ HEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHH SLAFFPAKDGKRLRIGQPVRVTPTTTKAQRHGGIEAEILKVRRLPVSKEAVINRLYNKES HHHHCCCCCCCEEECCCCEEECCCCCHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCHHH LFKAINTEDEGPLIEVATSLAKDPTTPSGYDWGGSKGPDLQLTAGTPTTLRVLVEQRRPI HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCH SYVIPLLRNLSGIY HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA