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The map label for this gene is ydiU [C]

Identifier: 33864377

GI number: 33864377

Start: 2228826

End: 2230307

Strand: Direct

Name: ydiU [C]

Synonym: PMT2113

Alternate gene names: 33864377

Gene position: 2228826-2230307 (Clockwise)

Preceding gene: 33864376

Following gene: 33864378

Centisome position: 92.45

GC content: 51.62

Gene sequence:

>1482_bases
TTGACTAACTTGCTACTCGGATTGAACTTTGAGCCGCAGATTGAAAGTCTGGGTTCTGATTATTGGGATGTGGTTGATGC
CGCGCGGTTTCCGCGCACTGAATTGCGTTTCCGTAATAATGACTTGCTTAGACAGCTTGGGATTGACCCTGGCGCCGTAA
AGGATCATCATCTGGAGCAGGCTTATGGTTGTTTTGAGGCTCGTACTCCGTTATTAGCTCTGCGATATCACGGCTATCAA
TTCGGTACATACAATCCATTGCTTGGAGATGGTCGTGGCTTCCTTTATGGTCAACTGCGTGATCGATTTGGACAGCTTCA
GGATCTTGGCACTAAGGGATCTGGTACAACTCCCTGGAGCCGTGGAGGGGATGGTCGACTGACCCTCAAAGGGGGTGTGC
GAGAGATCATCGCCAGTGAGGCGCTGCACCGTTTAGGCGTCACGACGAGCCGAACTCTTTGCTTGGTAGAAACCGGTGAG
AAGCTTTGGCGCAGTGATGAGCCTTCTCCTACCCGCAGTTCAGTGATGGTGCGCATAGCGCGCACACATCTTCGCTTTGG
TACTTGCGAGCGGCTGCTGCACTTGCGCAATGCTCAGGGTCTAGAGCGTTTGTTGCGTCATGTGGTTGATGTCTATTATC
CGCTGATTGCAGCTGCCCATCCTGTTCAAGATGGCAATGCTGCTGGCGCGATCGAAGCTCAGTTGCTGGCTTTCTACGCA
GAGCTCGTTGAACGGGTTGCCAGGTTGGCAGCAGAGTGGATGGCGGCTGGCTTTACCCATGGTGTCCTCAATACCGACAA
CATGTCTCTGCTGGGAGAGAGTTTCGATTACGGTCCATTCGCCTTTTTGGATCAATGGGAGCCTGGATTTACGGCTGCTT
ATTTTGATCAAACAGGCCTCTATGCCTATGGCAGGCAACCTGGGATTTGCCATAACAACCTGAGACTGCTTCAAGAGCCA
TTGGCAATGCTGCTGCCACGGCAGCCATTGGAGCAGTCTTTAGAGACGTTCGCTCCAATTTATCAATCTCATTATAGAGC
TTGCATGCAGCGTCGTCTCGGTCTTCCGAGCAGTTTTGATCACAATGGCAATATTGAGGGTGGTGATGATGCCGTGCATA
AAACTCTTGCACTCCTCGCCGCTTGGCCTGTTGGTTATGGCGCCTTCTTTGCAGGCCTTGCTACTCAAATATCGACCAAG
GGGTTGCCGGAAGAGCCAGAAGCTTTGTTGCCAGTGGTTTTAGATGGTGCTGAACCTGCAAGGAAAGCCTGGCTGGATTG
GAGAGATCGTTGGTGGACACAGCAACGGGAAGCTGTGTCTGCTGAGCCGGATGAGGCACAAGCCATCAATGCACGCTTGC
AGCGCTGGAATCTTGTCAAAACACCAATTCGATCTGTGATTGAGGAGTTTTGGCAAGCTATCGATCAACATGATGATTGG
CAGCCCTTGCAGGCTTGGTTGAAAGCAAGCTGTGTGGATTAA

Upstream 100 bases:

>100_bases
GCTGCTATGTGGCTAAACAGGGGAATAAAATATTGGCCATGAATGCATGAGGGCTGTCTATGAATTTGAGAACAACCTGT
AACGACAGCTTTGTGTTGGA

Downstream 100 bases:

>100_bases
CACTAAGGTCATAGGAGTATTTTCTTATAAAGTTGTTCTTTGATTGATACTTGCCTGGTCGCTTCAAAAGAAGCCTTGAT
GTTGACGAGAAAAATTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MTNLLLGLNFEPQIESLGSDYWDVVDAARFPRTELRFRNNDLLRQLGIDPGAVKDHHLEQAYGCFEARTPLLALRYHGYQ
FGTYNPLLGDGRGFLYGQLRDRFGQLQDLGTKGSGTTPWSRGGDGRLTLKGGVREIIASEALHRLGVTTSRTLCLVETGE
KLWRSDEPSPTRSSVMVRIARTHLRFGTCERLLHLRNAQGLERLLRHVVDVYYPLIAAAHPVQDGNAAGAIEAQLLAFYA
ELVERVARLAAEWMAAGFTHGVLNTDNMSLLGESFDYGPFAFLDQWEPGFTAAYFDQTGLYAYGRQPGICHNNLRLLQEP
LAMLLPRQPLEQSLETFAPIYQSHYRACMQRRLGLPSSFDHNGNIEGGDDAVHKTLALLAAWPVGYGAFFAGLATQISTK
GLPEEPEALLPVVLDGAEPARKAWLDWRDRWWTQQREAVSAEPDEAQAINARLQRWNLVKTPIRSVIEEFWQAIDQHDDW
QPLQAWLKASCVD

Sequences:

>Translated_493_residues
MTNLLLGLNFEPQIESLGSDYWDVVDAARFPRTELRFRNNDLLRQLGIDPGAVKDHHLEQAYGCFEARTPLLALRYHGYQ
FGTYNPLLGDGRGFLYGQLRDRFGQLQDLGTKGSGTTPWSRGGDGRLTLKGGVREIIASEALHRLGVTTSRTLCLVETGE
KLWRSDEPSPTRSSVMVRIARTHLRFGTCERLLHLRNAQGLERLLRHVVDVYYPLIAAAHPVQDGNAAGAIEAQLLAFYA
ELVERVARLAAEWMAAGFTHGVLNTDNMSLLGESFDYGPFAFLDQWEPGFTAAYFDQTGLYAYGRQPGICHNNLRLLQEP
LAMLLPRQPLEQSLETFAPIYQSHYRACMQRRLGLPSSFDHNGNIEGGDDAVHKTLALLAAWPVGYGAFFAGLATQISTK
GLPEEPEALLPVVLDGAEPARKAWLDWRDRWWTQQREAVSAEPDEAQAINARLQRWNLVKTPIRSVIEEFWQAIDQHDDW
QPLQAWLKASCVD
>Mature_492_residues
TNLLLGLNFEPQIESLGSDYWDVVDAARFPRTELRFRNNDLLRQLGIDPGAVKDHHLEQAYGCFEARTPLLALRYHGYQF
GTYNPLLGDGRGFLYGQLRDRFGQLQDLGTKGSGTTPWSRGGDGRLTLKGGVREIIASEALHRLGVTTSRTLCLVETGEK
LWRSDEPSPTRSSVMVRIARTHLRFGTCERLLHLRNAQGLERLLRHVVDVYYPLIAAAHPVQDGNAAGAIEAQLLAFYAE
LVERVARLAAEWMAAGFTHGVLNTDNMSLLGESFDYGPFAFLDQWEPGFTAAYFDQTGLYAYGRQPGICHNNLRLLQEPL
AMLLPRQPLEQSLETFAPIYQSHYRACMQRRLGLPSSFDHNGNIEGGDDAVHKTLALLAAWPVGYGAFFAGLATQISTKG
LPEEPEALLPVVLDGAEPARKAWLDWRDRWWTQQREAVSAEPDEAQAINARLQRWNLVKTPIRSVIEEFWQAIDQHDDWQ
PLQAWLKASCVD

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=356, Percent_Identity=36.2359550561798, Blast_Score=196, Evalue=3e-50,
Organism=Escherichia coli, GI1787999, Length=386, Percent_Identity=33.419689119171, Blast_Score=195, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6325034, Length=394, Percent_Identity=27.9187817258883, Blast_Score=141, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55394; Mature: 55263

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLLLGLNFEPQIESLGSDYWDVVDAARFPRTELRFRNNDLLRQLGIDPGAVKDHHLEQ
CCCEEEECCCCHHHHHHCCHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHH
AYGCFEARTPLLALRYHGYQFGTYNPLLGDGRGFLYGQLRDRFGQLQDLGTKGSGTTPWS
HHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCC
RGGDGRLTLKGGVREIIASEALHRLGVTTSRTLCLVETGEKLWRSDEPSPTRSSVMVRIA
CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCHHHHHHHHH
RTHLRFGTCERLLHLRNAQGLERLLRHVVDVYYPLIAAAHPVQDGNAAGAIEAQLLAFYA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ELVERVARLAAEWMAAGFTHGVLNTDNMSLLGESFDYGPFAFLDQWEPGFTAAYFDQTGL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCEEEEECCCCC
YAYGRQPGICHNNLRLLQEPLAMLLPRQPLEQSLETFAPIYQSHYRACMQRRLGLPSSFD
EEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HNGNIEGGDDAVHKTLALLAAWPVGYGAFFAGLATQISTKGLPEEPEALLPVVLDGAEPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCHH
RKAWLDWRDRWWTQQREAVSAEPDEAQAINARLQRWNLVKTPIRSVIEEFWQAIDQHDDW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QPLQAWLKASCVD
HHHHHHHHHHCCC
>Mature Secondary Structure 
TNLLLGLNFEPQIESLGSDYWDVVDAARFPRTELRFRNNDLLRQLGIDPGAVKDHHLEQ
CCEEEECCCCHHHHHHCCHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHH
AYGCFEARTPLLALRYHGYQFGTYNPLLGDGRGFLYGQLRDRFGQLQDLGTKGSGTTPWS
HHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCC
RGGDGRLTLKGGVREIIASEALHRLGVTTSRTLCLVETGEKLWRSDEPSPTRSSVMVRIA
CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCHHHHHHHHH
RTHLRFGTCERLLHLRNAQGLERLLRHVVDVYYPLIAAAHPVQDGNAAGAIEAQLLAFYA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ELVERVARLAAEWMAAGFTHGVLNTDNMSLLGESFDYGPFAFLDQWEPGFTAAYFDQTGL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCEEEEECCCCC
YAYGRQPGICHNNLRLLQEPLAMLLPRQPLEQSLETFAPIYQSHYRACMQRRLGLPSSFD
EEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HNGNIEGGDDAVHKTLALLAAWPVGYGAFFAGLATQISTKGLPEEPEALLPVVLDGAEPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCHH
RKAWLDWRDRWWTQQREAVSAEPDEAQAINARLQRWNLVKTPIRSVIEEFWQAIDQHDDW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QPLQAWLKASCVD
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]