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The map label for this gene is ybeY [C]

Identifier: 33864330

GI number: 33864330

Start: 2173215

End: 2173778

Strand: Direct

Name: ybeY [C]

Synonym: PMT2065

Alternate gene names: 33864330

Gene position: 2173215-2173778 (Clockwise)

Preceding gene: 33864329

Following gene: 33864331

Centisome position: 90.14

GC content: 55.5

Gene sequence:

>564_bases
ATGAGCGCACTGCAAACCTCTCCGATCAACCTCGACCTCGATCTGGCCTTTCATCCCGCCAACGATGATGCTTTGACGAG
CTTGGTTGATGCAGACACAAAGCGCCGCCTCACTCACGCAAGTCCCTGGCAGCAAGACCTCACAGCCTGGATTGAAAGCG
TCCGTCGTGACCCAACCCTGACCTGTCCTGAGATTGTGCGCCTCAGCCCGATGCTCAGCCTGGGCCTTCAACTCACGGAT
GACGCCACCATCACTGAACTGAATCACTCTTGGCGCCAACGATCTGAATCGACTGACGTCCTCTCCTTCCCAGCACTGGA
TAACAGCCTCGTCCTACCAACAGACACTTGCGTCGAACTGGGCGACATTGTCGTCTCAGTGCAAACAGCACAACGCCAAG
CCAAACAACACAGCCATGAACTTGGCCTAGAACTCCGCTGGTTGGTAAGCCATGGCCTCCTGCATCTACTGGGCTGGGAC
CACCCAACAGATCAGAGCCTGAAAACGATGCTGAGCTACCAGGAGCAACTTCTCAGCATCAACGGTAAGGTTCATCACCA
CTAG

Upstream 100 bases:

>100_bases
CAGAGCCTGTGGCACTTCGGCCTCACCGCCTTTGGCGTTGTGGGGTTCATCTTGATGATTGCCTGGCTCGGCAGGCCCAC
ACTTCCCCATTGATGCGCGC

Downstream 100 bases:

>100_bases
TGATGCAATCCAAGAGATCACTACATGCTCCCTCAGACCAACAATTTGTTGTCCGAAGAGATCACCCCACTATCCAGCCA
AGGGCATCAAGCTGCCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSALQTSPINLDLDLAFHPANDDALTSLVDADTKRRLTHASPWQQDLTAWIESVRRDPTLTCPEIVRLSPMLSLGLQLTD
DATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWD
HPTDQSLKTMLSYQEQLLSINGKVHHH

Sequences:

>Translated_187_residues
MSALQTSPINLDLDLAFHPANDDALTSLVDADTKRRLTHASPWQQDLTAWIESVRRDPTLTCPEIVRLSPMLSLGLQLTD
DATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWD
HPTDQSLKTMLSYQEQLLSINGKVHHH
>Mature_186_residues
SALQTSPINLDLDLAFHPANDDALTSLVDADTKRRLTHASPWQQDLTAWIESVRRDPTLTCPEIVRLSPMLSLGLQLTDD
ATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDH
PTDQSLKTMLSYQEQLLSINGKVHHH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PROMM (Q7V498)

Other databases:

- EMBL:   BX548175
- RefSeq:   NP_895890.1
- ProteinModelPortal:   Q7V498
- SMR:   Q7V498
- STRING:   Q7V498
- GeneID:   1728582
- GenomeReviews:   BX548175_GR
- KEGG:   pmt:PMT2065
- NMPDR:   fig|74547.1.peg.2057
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LRWLVSH
- ProtClustDB:   CLSK647407
- BioCyc:   PMAR74547:PMT2065-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20990; Mature: 20859

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALQTSPINLDLDLAFHPANDDALTSLVDADTKRRLTHASPWQQDLTAWIESVRRDPTL
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
TCPEIVRLSPMLSLGLQLTDDATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVEL
CCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCHHHHHH
GDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPTDQSLKTMLSYQEQLLSI
HHHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
NGKVHHH
CCEECCC
>Mature Secondary Structure 
SALQTSPINLDLDLAFHPANDDALTSLVDADTKRRLTHASPWQQDLTAWIESVRRDPTL
CCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
TCPEIVRLSPMLSLGLQLTDDATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVEL
CCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCHHHHHH
GDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPTDQSLKTMLSYQEQLLSI
HHHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
NGKVHHH
CCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642