| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is mraW [H]
Identifier: 33864313
GI number: 33864313
Start: 2159748
End: 2160680
Strand: Reverse
Name: mraW [H]
Synonym: PMT2048
Alternate gene names: 33864313
Gene position: 2160680-2159748 (Counterclockwise)
Preceding gene: 33864316
Following gene: 33864312
Centisome position: 89.62
GC content: 58.31
Gene sequence:
>933_bases ATGCCCGATTCGTCCATTAATTCGGATTCAGGTTTCAAGCATCTGTCCGTAATGGAAGATGCCGTGTCGCAGCCTGTCGC TGCTTTGCCTGCAGAGCTGCTCGTTGGCGGGTTGATCATTGATGCCACTCTGGGCGGCGGCGGCCATAGTGCTCTGTTGC TGGAACGTCATCCAGATCTCCGCCTGATCGGTTTGGACCAAGACCCCACGGCTCGTGCGGCGGCGGCTGAGCGACTGGCG CTATTTGGAGATCGCGTCACGATCGTGGCGACTAATTTTGTCGATTTCAGCCCCGCCGAGCCGGCAGTGGTGGTGATGGC TGACTTGGGAGTGAGCAGTCCCCAACTGGATGTGGCGCAAAGAGGTTTTAGCTTTCGCCTCGATGGTCCGCTCGACATGC GCATGAACCCCCAGGTGGGCGAAACGGCGGCTGAGCTGATTGGGCGTCTCGAAGAAACAGAGCTGGCAGATCTCATCTAT GCCTATGGCGAGGAGCGCTTGTCCCGACGCATCGCCCGGCGCATTAAGCACGATCTGGCAGAGCAAGGACCCTATGCCGG CACCGCCGCTTTGGCTTATGCGGTGGCTGGTTGCTATCCGCCGAAGGCCCGTCATGGTCGTATCCATCCAGCCACCCGTA CTTTTCAGGCCCTGCGCATTGCTGTGAATAATGAATTGGATGCCTTAGATCGCTTCTTGCAAAAGGCCCCTGACTGGTTA GTCCCAGGTGGTTTGCTCGCAGTGATCAGCTTTCATTCTCTTGAAGACCGTCGCGTCAAGACTGCTTTCTTGCGTGATCA GCGCCTGGAGCGGCTAACCCGTAAGCCTTTGGTGGCCAGCGAGATGGAGATCGCTGCCAATCCACGCAGCCGTAGTGCAA AGTGTCGATTCGCTCGCCGCTTGCCTCAAGCGACCACTGCCGATGCCCTCTGA
Upstream 100 bases:
>100_bases ATGGGGGCCGAAGTTGACGACCATTGGCTCCGTACGCGTTTCCAGCTGCGACATGGGGCCTTGAGTTGCAGAGCGTTAGC GGGATCTTAGGAAGGAACCC
Downstream 100 bases:
>100_bases TCCAATCTGGTGGTGGGCTTTTGGAGTGCAACTGCTAGCTCTCCCTGGAGCATTGTTGCCGGTGTTACCGAGTTTGTTGT GGTTGCCACTCGGTGCTGGT
Product: S-adenosyl-methyltransferase MraW
Products: NA
Alternate protein names: 16S rRNA m(4)C1402 methyltransferase; rRNA (cytosine-N(4)-)-methyltransferase RsmH [H]
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MPDSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLA LFGDRVTIVATNFVDFSPAEPAVVVMADLGVSSPQLDVAQRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIY AYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL VPGGLLAVISFHSLEDRRVKTAFLRDQRLERLTRKPLVASEMEIAANPRSRSAKCRFARRLPQATTADAL
Sequences:
>Translated_310_residues MPDSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLA LFGDRVTIVATNFVDFSPAEPAVVVMADLGVSSPQLDVAQRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIY AYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL VPGGLLAVISFHSLEDRRVKTAFLRDQRLERLTRKPLVASEMEIAANPRSRSAKCRFARRLPQATTADAL >Mature_309_residues PDSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLAL FGDRVTIVATNFVDFSPAEPAVVVMADLGVSSPQLDVAQRGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYA YGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWLV PGGLLAVISFHSLEDRRVKTAFLRDQRLERLTRKPLVASEMEIAANPRSRSAKCRFARRLPQATTADAL
Specific function: Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA [H]
COG id: COG0275
COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. RsmH family [H]
Homologues:
Organism=Homo sapiens, GI165377209, Length=346, Percent_Identity=35.8381502890173, Blast_Score=165, Evalue=5e-41, Organism=Homo sapiens, GI165377202, Length=177, Percent_Identity=36.7231638418079, Blast_Score=99, Evalue=4e-21, Organism=Escherichia coli, GI1786270, Length=318, Percent_Identity=40.8805031446541, Blast_Score=189, Evalue=3e-49, Organism=Drosophila melanogaster, GI62472493, Length=331, Percent_Identity=32.02416918429, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI28571637, Length=331, Percent_Identity=32.02416918429, Blast_Score=132, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002903 [H]
Pfam domain/function: PF01795 Methyltransf_5 [H]
EC number: NA
Molecular weight: Translated: 33687; Mature: 33556
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDL CCCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHCCEEEEEEECCCCCEEEEEECCCCE RLIGLDQDPTARAAAAERLALFGDRVTIVATNFVDFSPAEPAVVVMADLGVSSPQLDVAQ EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHH RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC VPGGLLAVISFHSLEDRRVKTAFLRDQRLERLTRKPLVASEMEIAANPRSRSAKCRFARR CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHH LPQATTADAL CCCCCCCCCC >Mature Secondary Structure PDSSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDL CCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHCCEEEEEEECCCCCEEEEEECCCCE RLIGLDQDPTARAAAAERLALFGDRVTIVATNFVDFSPAEPAVVVMADLGVSSPQLDVAQ EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHH RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC VPGGLLAVISFHSLEDRRVKTAFLRDQRLERLTRKPLVASEMEIAANPRSRSAKCRFARR CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHH LPQATTADAL CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA