Click here to switch to the map view.

The map label for this gene is csgD [C]

Identifier: 33864279

GI number: 33864279

Start: 2129164

End: 2129442

Strand: Direct

Name: csgD [C]

Synonym: PMT2014

Alternate gene names: 33864279

Gene position: 2129164-2129442 (Clockwise)

Preceding gene: 33864277

Following gene: 33864291

Centisome position: 88.32

GC content: 48.39

Gene sequence:

>279_bases
ATGGCCACAGGCAAAATCCCCAATTCCGTTCATATCTCACTCTCTTCAAGGGAAATGGAAATCATTGACCTTGTCGCAGA
CGGGCTAACCAACCAAGAAATCGCTGAAAAGCTAACCATCAGCAAGCGAACTGTCGACAATCATGTCAGCAACATGTTCA
CCAAAACAGGCTCAAAAAATCGTGTAGCCCTTCTGAACTGGGCCATGGATCACGGCAAGATCTGCCGCGATGGTTTCAAT
TGCTGCTCCTTGCCAGACGACTCCGACTCTGACTCCTAA

Upstream 100 bases:

>100_bases
CTGAACTCAAATCACGATGTCCTTCACTCACTCACCAACTATGAGGGATCGCTAGCCCAAAGTCTGCGTAAGATGACCGG
AGATAATCAATGGGGAGGAA

Downstream 100 bases:

>100_bases
ACCCAAGCACAGCGGGCTCTGGGATGGACATCAAAGAACATCCTTCGGACTCGAGATCAAACAACTCGACATAGGCCATA
CAAGCCTCACGATCCCGGCA

Product: LuxR family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator; Two Component Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family; LuxR Transcriptional Regulator; Transcriptional Regulator LuxR Family Protein; Two Component LuxR Family Transcriptional Regulator; Two-Component Response Regulator; Two Component Transcriptional Regulator; Response Regulator Like-Protein; Response Regulator Receiver; LuxR Family Transcriptional Regulatory Protein; Bacterial Regulatory Protein LuxR Family; Regulatory Protein LuxR; Sigma-70 Region 4 Family

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFN
CCSLPDDSDSDS

Sequences:

>Translated_92_residues
MATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFN
CCSLPDDSDSDS
>Mature_91_residues
ATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFNC
CSLPDDSDSDS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10096; Mature: 9965

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN
CCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVALLNWAMDHGKICRDGFNCCSLPDDSDSDS
EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVALLNWAMDHGKICRDGFNCCSLPDDSDSDS
EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA