Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 33864229

GI number: 33864229

Start: 2074098

End: 2075747

Strand: Direct

Name: ybbD [H]

Synonym: PMT1964

Alternate gene names: 33864229

Gene position: 2074098-2075747 (Clockwise)

Preceding gene: 33864228

Following gene: 33864230

Centisome position: 86.03

GC content: 56.67

Gene sequence:

>1650_bases
GTGAGCCCGCCGATCCAGAGCCCCCTTCGACGTCAAGTCGCTGAGTTGCTGGTGGTGCGAGCAAGTGGTCATGCCAGCGA
TGATCAACGCCGTTATCCAAAATGGGAACTAAGCAACGCTGAGCTCAAACGTCTGCTCGCTGAAGGTGTGGGCGGTGTGA
TTTTGCTGGGCGGCACAAGCAACGAAATAAGGCATCGCTGCAAGAAACTTAGACAATGGGCGAAAGCACCCCTCCTGTTA
TGTGCCGATGTGGAAGAGGGTGTCGGTCAACGCTTTGAAGGCGGTACTTGGCTCGTACCGCCCATGGCCCTTGGACGGCT
CTATCAAGAAGACCAACGTCGTGCTGCCAATCTGGCCGAGCGCTACGGCCGCTGCACAGGACACCAAGCTCGACGCTGCG
GACTCAACTGGGTGTTAGCACCCGTCTGCGATGTCAACAACAACCCAGCCAACCCTGTCATCAATGTGCGGGCATGGGGA
GAAGACACTGCCACCGTCTCTTCTTTGGCCTGTGCTTTCCAACAAGGCCTTGCAGCAGAAGGTGTGCTGGGATGCGCCAA
ACACTTCCCAGGTCATGGCAATACGGGAATGGATTCCCATCTGCAGTTGCCTGTACTGGATGACAACCTCCGCCAGCTTA
TGGAGCTTGAACTCGTGCCTTTCCAGGCCGTCATGAAAGCCGGCATCGACAGCATCATGACGGCCCATCTATTGATGCGA
AACCTCGACGCCTCCTCTCCGGCGACCCTGTCCCCAGCTGTTCTCCAAGACATTTTACGCCGCCAACTCAAGTTCGAGGG
CTTGGTCGTGACCGATGCCCTGGTCATGCGAGCAATCACTCAGTCCTATAACGCTGGCGAAGCCGCCGTGATGGCCTTTG
CCGCCGGAGCTGATCTGATTTTAATGCCCGAGAACGCAGATGACGCTATCGAGGCCCTATGCGAGGCCCTCCAGTCGGGC
CAAATTCCAATGCAACGTTTGCACGCCTCCCAAGAGCGCCGGAGAGAAGCCTTACAAAAAGTTGGTACCTCCACTGCAAA
GCTGGCCCTCAAAGACAGCACAAGCATTGACAAACCCCTGGAACGAGATGAAGACCGTGCTCTCGCCAGAGAACTGGTGA
CTGCATCGCTAAAAATCCACCATCCAGGACCGGTCACCCCAACTGAGTCAGGCATCAATCTCCTGCGGGTGGATGGAGTC
TTGCCCTGCTCGGTACTCACAGCCACGGCCCCAGCACTCGTACTGCCCTCTGAAGCTGGGTTTCAAAGTTTGCTCTATCA
CCCCCTAGGGATCTCTCCCTGGCAAGACGACCGAGATCAGCCTTTAGCTCTAGAACGATTGGGCATCGGCCCAGTAATGC
TGCAACTTTTCTTACGCGGGAACCCCTTCCGTGGCGACCAGGATCGCCACGAGCCATGGGTGGCAACCGTCAAGCAACTC
CAACAGCAAAAACGCCTCGCAGGCCTAGTTGTCTACGGCAGTCCTTACATCTGGGATGAGCTGATTGAAGTGTTAAATAT
CGGCATCCCCGCGGCTTACAGCCCTGGTCAGATGCCTGAAGCGCAGCGCCAGGTTCTTACCTGCCTGCTACAACCAGCGC
AGGTGCAATCAAGTGCCCAAACGCCGCTGTTCCAAGACTTCACTGACTGA

Upstream 100 bases:

>100_bases
ACCTTCTTGAGCAATTGGAACAACAGCGAGAAACCCTTGGAGAAGTGCAATCAGAGAGTGATCAACCAACGACTTACGAG
ACAACAACTGTCAACAAAAC

Downstream 100 bases:

>100_bases
CGTCTATATCCTCGAGCCAACCTACGAACCAGCTCCAATGCTCAGCCTCTCGATGGTCGTACGCAACGAAGAGAGTCGCC
TGGGAGCCTGCCTGGCGTCC

Product: beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 549; Mature: 548

Protein sequence:

>549_residues
MSPPIQSPLRRQVAELLVVRASGHASDDQRRYPKWELSNAELKRLLAEGVGGVILLGGTSNEIRHRCKKLRQWAKAPLLL
CADVEEGVGQRFEGGTWLVPPMALGRLYQEDQRRAANLAERYGRCTGHQARRCGLNWVLAPVCDVNNNPANPVINVRAWG
EDTATVSSLACAFQQGLAAEGVLGCAKHFPGHGNTGMDSHLQLPVLDDNLRQLMELELVPFQAVMKAGIDSIMTAHLLMR
NLDASSPATLSPAVLQDILRRQLKFEGLVVTDALVMRAITQSYNAGEAAVMAFAAGADLILMPENADDAIEALCEALQSG
QIPMQRLHASQERRREALQKVGTSTAKLALKDSTSIDKPLERDEDRALARELVTASLKIHHPGPVTPTESGINLLRVDGV
LPCSVLTATAPALVLPSEAGFQSLLYHPLGISPWQDDRDQPLALERLGIGPVMLQLFLRGNPFRGDQDRHEPWVATVKQL
QQQKRLAGLVVYGSPYIWDELIEVLNIGIPAAYSPGQMPEAQRQVLTCLLQPAQVQSSAQTPLFQDFTD

Sequences:

>Translated_549_residues
MSPPIQSPLRRQVAELLVVRASGHASDDQRRYPKWELSNAELKRLLAEGVGGVILLGGTSNEIRHRCKKLRQWAKAPLLL
CADVEEGVGQRFEGGTWLVPPMALGRLYQEDQRRAANLAERYGRCTGHQARRCGLNWVLAPVCDVNNNPANPVINVRAWG
EDTATVSSLACAFQQGLAAEGVLGCAKHFPGHGNTGMDSHLQLPVLDDNLRQLMELELVPFQAVMKAGIDSIMTAHLLMR
NLDASSPATLSPAVLQDILRRQLKFEGLVVTDALVMRAITQSYNAGEAAVMAFAAGADLILMPENADDAIEALCEALQSG
QIPMQRLHASQERRREALQKVGTSTAKLALKDSTSIDKPLERDEDRALARELVTASLKIHHPGPVTPTESGINLLRVDGV
LPCSVLTATAPALVLPSEAGFQSLLYHPLGISPWQDDRDQPLALERLGIGPVMLQLFLRGNPFRGDQDRHEPWVATVKQL
QQQKRLAGLVVYGSPYIWDELIEVLNIGIPAAYSPGQMPEAQRQVLTCLLQPAQVQSSAQTPLFQDFTD
>Mature_548_residues
SPPIQSPLRRQVAELLVVRASGHASDDQRRYPKWELSNAELKRLLAEGVGGVILLGGTSNEIRHRCKKLRQWAKAPLLLC
ADVEEGVGQRFEGGTWLVPPMALGRLYQEDQRRAANLAERYGRCTGHQARRCGLNWVLAPVCDVNNNPANPVINVRAWGE
DTATVSSLACAFQQGLAAEGVLGCAKHFPGHGNTGMDSHLQLPVLDDNLRQLMELELVPFQAVMKAGIDSIMTAHLLMRN
LDASSPATLSPAVLQDILRRQLKFEGLVVTDALVMRAITQSYNAGEAAVMAFAAGADLILMPENADDAIEALCEALQSGQ
IPMQRLHASQERRREALQKVGTSTAKLALKDSTSIDKPLERDEDRALARELVTASLKIHHPGPVTPTESGINLLRVDGVL
PCSVLTATAPALVLPSEAGFQSLLYHPLGISPWQDDRDQPLALERLGIGPVMLQLFLRGNPFRGDQDRHEPWVATVKQLQ
QQKRLAGLVVYGSPYIWDELIEVLNIGIPAAYSPGQMPEAQRQVLTCLLQPAQVQSSAQTPLFQDFTD

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=287, Percent_Identity=29.616724738676, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788453, Length=350, Percent_Identity=23.4285714285714, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 60019; Mature: 59887

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPIQSPLRRQVAELLVVRASGHASDDQRRYPKWELSNAELKRLLAEGVGGVILLGGTS
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCC
NEIRHRCKKLRQWAKAPLLLCADVEEGVGQRFEGGTWLVPPMALGRLYQEDQRRAANLAE
HHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
RYGRCTGHQARRCGLNWVLAPVCDVNNNPANPVINVRAWGEDTATVSSLACAFQQGLAAE
HHCCCCCCHHHHCCCCEEEEEHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHH
GVLGCAKHFPGHGNTGMDSHLQLPVLDDNLRQLMELELVPFQAVMKAGIDSIMTAHLLMR
HHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
NLDASSPATLSPAVLQDILRRQLKFEGLVVTDALVMRAITQSYNAGEAAVMAFAAGADLI
HCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHEECCCCEE
LMPENADDAIEALCEALQSGQIPMQRLHASQERRREALQKVGTSTAKLALKDSTSIDKPL
EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCC
ERDEDRALARELVTASLKIHHPGPVTPTESGINLLRVDGVLPCSVLTATAPALVLPSEAG
CCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCEECCCCCC
FQSLLYHPLGISPWQDDRDQPLALERLGIGPVMLQLFLRGNPFRGDQDRHEPWVATVKQL
HHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
QQQKRLAGLVVYGSPYIWDELIEVLNIGIPAAYSPGQMPEAQRQVLTCLLQPAQVQSSAQ
HHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCC
TPLFQDFTD
CCCHHCCCC
>Mature Secondary Structure 
SPPIQSPLRRQVAELLVVRASGHASDDQRRYPKWELSNAELKRLLAEGVGGVILLGGTS
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCC
NEIRHRCKKLRQWAKAPLLLCADVEEGVGQRFEGGTWLVPPMALGRLYQEDQRRAANLAE
HHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
RYGRCTGHQARRCGLNWVLAPVCDVNNNPANPVINVRAWGEDTATVSSLACAFQQGLAAE
HHCCCCCCHHHHCCCCEEEEEHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHH
GVLGCAKHFPGHGNTGMDSHLQLPVLDDNLRQLMELELVPFQAVMKAGIDSIMTAHLLMR
HHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
NLDASSPATLSPAVLQDILRRQLKFEGLVVTDALVMRAITQSYNAGEAAVMAFAAGADLI
HCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHEECCCCEE
LMPENADDAIEALCEALQSGQIPMQRLHASQERRREALQKVGTSTAKLALKDSTSIDKPL
EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCC
ERDEDRALARELVTASLKIHHPGPVTPTESGINLLRVDGVLPCSVLTATAPALVLPSEAG
CCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCEECCCCCC
FQSLLYHPLGISPWQDDRDQPLALERLGIGPVMLQLFLRGNPFRGDQDRHEPWVATVKQL
HHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
QQQKRLAGLVVYGSPYIWDELIEVLNIGIPAAYSPGQMPEAQRQVLTCLLQPAQVQSSAQ
HHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCC
TPLFQDFTD
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]