Click here to switch to the map view.

The map label for this gene is psbE

Identifier: 33864162

GI number: 33864162

Start: 1999835

End: 2000083

Strand: Direct

Name: psbE

Synonym: PMT1896

Alternate gene names: 33864162

Gene position: 1999835-2000083 (Clockwise)

Preceding gene: 33864161

Following gene: 33864163

Centisome position: 82.95

GC content: 57.43

Gene sequence:

>249_bases
ATGGCTGCTGGCTCCACCGGGGAACGCCCTTTTTTCGAGATCGTCACTAGCATCCGCTACTGGGTGATCCACGCTGTTAC
CCTGCCGTCGATCTTCCTCGCCGGCTACCTGTTTGTGTCCACGGGCCTTGCCTATGACACATTCGGCACACCTCGCCCTG
ATGCCTATTTCCAGGCAAGCGAAAGCAAGGCTCCTGTCGTTAGCCAACGCTACGAAGCCAAATCCCAACTCGACCTGCGC
CTGCAATAA

Upstream 100 bases:

>100_bases
ACCTACAGCCAAATGAGCAACGCTCTGTAACCATGCCGTTCACCAGACGCAGTGTTGAGGCTCAGCCTTATAGGATCTAA
AAGCTGATACGCCTGAGGCC

Downstream 100 bases:

>100_bases
GCCATGGCTCAATCTTCTTCTGCACCTCTTCAAGCGCTTAACGTCCGTGTCTATCCGATTTTCACGGTGCGTTGGCTCGC
TGTACACGTCTTGGGTGTAC

Product: cytochrome b559 subunit alpha

Products: NA

Alternate protein names: PSII reaction center subunit V

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MAAGSTGERPFFEIVTSIRYWVIHAVTLPSIFLAGYLFVSTGLAYDTFGTPRPDAYFQASESKAPVVSQRYEAKSQLDLR
LQ

Sequences:

>Translated_82_residues
MAAGSTGERPFFEIVTSIRYWVIHAVTLPSIFLAGYLFVSTGLAYDTFGTPRPDAYFQASESKAPVVSQRYEAKSQLDLR
LQ
>Mature_81_residues
AAGSTGERPFFEIVTSIRYWVIHAVTLPSIFLAGYLFVSTGLAYDTFGTPRPDAYFQASESKAPVVSQRYEAKSQLDLRL
Q

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBE_PROM3 (A2CCQ0)

Other databases:

- EMBL:   CP000554
- RefSeq:   YP_001018525.1
- ProteinModelPortal:   A2CCQ0
- SMR:   A2CCQ0
- STRING:   A2CCQ0
- GeneID:   4778570
- GenomeReviews:   CP000554_GR
- KEGG:   pmf:P9303_25291
- eggNOG:   NOG07088
- HOGENOM:   HBG284226
- OMA:   TPRPNEY
- ProtClustDB:   PRK02557
- GO:   GO:0009536
- GO:   GO:0006810
- HAMAP:   MF_00642
- InterPro:   IPR006217
- InterPro:   IPR013081
- InterPro:   IPR013082
- PIRSF:   PIRSF000036
- TIGRFAMs:   TIGR01332

Pfam domain/function: PF00283 Cytochrom_B559; PF00284 Cytochrom_B559a

EC number: NA

Molecular weight: Translated: 9136; Mature: 9005

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00537 CYTOCHROME_B559

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xecd5218)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGSTGERPFFEIVTSIRYWVIHAVTLPSIFLAGYLFVSTGLAYDTFGTPRPDAYFQAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
ESKAPVVSQRYEAKSQLDLRLQ
CCCCCCHHHHHCCCCCCCEECH
>Mature Secondary Structure 
AAGSTGERPFFEIVTSIRYWVIHAVTLPSIFLAGYLFVSTGLAYDTFGTPRPDAYFQAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
ESKAPVVSQRYEAKSQLDLRLQ
CCCCCCHHHHHCCCCCCCEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA