| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is 33864086
Identifier: 33864086
GI number: 33864086
Start: 1926929
End: 1928218
Strand: Direct
Name: 33864086
Synonym: PMT1819
Alternate gene names: NA
Gene position: 1926929-1928218 (Clockwise)
Preceding gene: 33864084
Following gene: 33864087
Centisome position: 79.93
GC content: 56.05
Gene sequence:
>1290_bases ATGGAGCCCTTCTCTCCGCTCAATTGGTTCAGACGCAGCTCATCCCAGGCCAGCTGCCGAACGGCATTGTCCAGCCAACC TTCCCTTGAAGCTGCGGTTAACGAGGTGGCGGCAGCCCTGGCGGGGGGCAGCTCGGCCGATCTAGCACTCGTCTTTGCCT CCACCCACTACGCCAGCGATCTACAGCGATTGCTGCCTTTATTGCAGCGTCGACTGAAAGCAACCCACTGGTTGGGGTGT GCCGGTGGAGGCGTGATTGGCACCACAGCCAAAGGGAATGCCTCAGAGCTCGAAAAAGAACCTGCTCTCAGCATCACCAT GCTGCAGCTGCCAGGAGCCATTCTCAAGCCCTTCTACCTTGAAACCCAGTCATTACCAGACCTAGATGGACCAGCTCAGC ACTGGCAAGAATGGGTTGGAGCTGATCCTTTCAATGCCCGCAGCATGTTGCTGCTTGTGGATCCCAGCTCACGCTCAATC AATGATCTCATTAGCGGCCTGGATTACGCCTACCCAACCACGACCAAACTCGGTGGCATTGCCGGCCCTCATAATGCCCC TCATGGCTCCCTGTTCTTTGACGACCGCGTTGTCATGGGCGCCGTTGGCTGCAGCTTTGGGGGCGACTGGAATCTGGAAG TCGTGGTCGCACAGGGTTGCAAACCGATTGGTCCTGTGTTCGCCATTGAACAGGTGCAAAAAAATATTCTTTTGGAGCTC AGTCACGAAAACCAGCGGGACAGTCCGATGGCCTGCCTACAACGCGTGTTAGATGATCTCTCAGAAGAAGAACGAGAGAT GGTCCGGCATTCACTTTTTTTAGGAATAGAACGACGCGATCTGGTGTTAGCAGGAACCGGAGCACCTCAGCCTCAAGGAG CTTTTTTGGTGAGGAACCTGATCGGAGTAGATCCCAAGAATGGTGCCGTTGCCGTCGCCGAGCAAATAAGAGCTGGCCAA AACGTGCAATTTCAGCTGCGGGAAGCTGAGGCCTCACGGCAAGAATCTGAGCTACTGCTCGGTGCCGCAAGAGAGCGCAA TACCAGCCCCCCTCTCTTCGGCCTATTAATGGCTTGCCTCGGGCGAGGACATGGCCTCTACGGCGTACCCAATGGTGATG TACACATCGCACGCAAACTGATGGCAGAACTACCTATCGCTGGAGTGTTCTGCAACGGTGAAATCGGCCCTGCCGGAGGC GTTGGCGCTACCCACATTCACGGTTACACGGCCTGCTGGGGTTTGCTTAGGCATGACCCCTCTTCCTCGGAACCAGCCAA ATCGGTCTAA
Upstream 100 bases:
>100_bases GACCAGAGTGCGATAGGGGAGTTCAGGCACTTAGGAGGTTCGTGAAGGCGTCATTATCAATGCTGGCCTGAGTTCCGTCA GTGTTGTTAGGGTCCAATTC
Downstream 100 bases:
>100_bases GTGTGCGCCAGCACGTCAATCCTCTCAGCCGTTTCTTCCAACTTCCAAGGCCACTGCCAAGCCCGGAAGAAATGTTTGCG CAATCCAGCCGCCCTCTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MEPFSPLNWFRRSSSQASCRTALSSQPSLEAAVNEVAAALAGGSSADLALVFASTHYASDLQRLLPLLQRRLKATHWLGC AGGGVIGTTAKGNASELEKEPALSITMLQLPGAILKPFYLETQSLPDLDGPAQHWQEWVGADPFNARSMLLLVDPSSRSI NDLISGLDYAYPTTTKLGGIAGPHNAPHGSLFFDDRVVMGAVGCSFGGDWNLEVVVAQGCKPIGPVFAIEQVQKNILLEL SHENQRDSPMACLQRVLDDLSEEEREMVRHSLFLGIERRDLVLAGTGAPQPQGAFLVRNLIGVDPKNGAVAVAEQIRAGQ NVQFQLREAEASRQESELLLGAARERNTSPPLFGLLMACLGRGHGLYGVPNGDVHIARKLMAELPIAGVFCNGEIGPAGG VGATHIHGYTACWGLLRHDPSSSEPAKSV
Sequences:
>Translated_429_residues MEPFSPLNWFRRSSSQASCRTALSSQPSLEAAVNEVAAALAGGSSADLALVFASTHYASDLQRLLPLLQRRLKATHWLGC AGGGVIGTTAKGNASELEKEPALSITMLQLPGAILKPFYLETQSLPDLDGPAQHWQEWVGADPFNARSMLLLVDPSSRSI NDLISGLDYAYPTTTKLGGIAGPHNAPHGSLFFDDRVVMGAVGCSFGGDWNLEVVVAQGCKPIGPVFAIEQVQKNILLEL SHENQRDSPMACLQRVLDDLSEEEREMVRHSLFLGIERRDLVLAGTGAPQPQGAFLVRNLIGVDPKNGAVAVAEQIRAGQ NVQFQLREAEASRQESELLLGAARERNTSPPLFGLLMACLGRGHGLYGVPNGDVHIARKLMAELPIAGVFCNGEIGPAGG VGATHIHGYTACWGLLRHDPSSSEPAKSV >Mature_429_residues MEPFSPLNWFRRSSSQASCRTALSSQPSLEAAVNEVAAALAGGSSADLALVFASTHYASDLQRLLPLLQRRLKATHWLGC AGGGVIGTTAKGNASELEKEPALSITMLQLPGAILKPFYLETQSLPDLDGPAQHWQEWVGADPFNARSMLLLVDPSSRSI NDLISGLDYAYPTTTKLGGIAGPHNAPHGSLFFDDRVVMGAVGCSFGGDWNLEVVVAQGCKPIGPVFAIEQVQKNILLEL SHENQRDSPMACLQRVLDDLSEEEREMVRHSLFLGIERRDLVLAGTGAPQPQGAFLVRNLIGVDPKNGAVAVAEQIRAGQ NVQFQLREAEASRQESELLLGAARERNTSPPLFGLLMACLGRGHGLYGVPNGDVHIARKLMAELPIAGVFCNGEIGPAGG VGATHIHGYTACWGLLRHDPSSSEPAKSV
Specific function: Unknown
COG id: COG4398
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis Rv0874c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019494 - InterPro: IPR013702 - InterPro: IPR016741 [H]
Pfam domain/function: PF08495 FIST; PF10442 FIST_C [H]
EC number: NA
Molecular weight: Translated: 45789; Mature: 45789
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPFSPLNWFRRSSSQASCRTALSSQPSLEAAVNEVAAALAGGSSADLALVFASTHYASD CCCCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHH LQRLLPLLQRRLKATHWLGCAGGGVIGTTAKGNASELEKEPALSITMLQLPGAILKPFYL HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHCCCCCCEEEEECCCCHHHCCHHC ETQSLPDLDGPAQHWQEWVGADPFNARSMLLLVDPSSRSINDLISGLDYAYPTTTKLGGI CCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC AGPHNAPHGSLFFDDRVVMGAVGCSFGGDWNLEVVVAQGCKPIGPVFAIEQVQKNILLEL CCCCCCCCCCEEECCCEEEEEHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEE SHENQRDSPMACLQRVLDDLSEEEREMVRHSLFLGIERRDLVLAGTGAPQPQGAFLVRNL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH IGVDPKNGAVAVAEQIRAGQNVQFQLREAEASRQESELLLGAARERNTSPPLFGLLMACL HCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH GRGHGLYGVPNGDVHIARKLMAELPIAGVFCNGEIGPAGGVGATHIHGYTACWGLLRHDP CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC SSSEPAKSV CCCCCCCCC >Mature Secondary Structure MEPFSPLNWFRRSSSQASCRTALSSQPSLEAAVNEVAAALAGGSSADLALVFASTHYASD CCCCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHH LQRLLPLLQRRLKATHWLGCAGGGVIGTTAKGNASELEKEPALSITMLQLPGAILKPFYL HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHCCCCCCEEEEECCCCHHHCCHHC ETQSLPDLDGPAQHWQEWVGADPFNARSMLLLVDPSSRSINDLISGLDYAYPTTTKLGGI CCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC AGPHNAPHGSLFFDDRVVMGAVGCSFGGDWNLEVVVAQGCKPIGPVFAIEQVQKNILLEL CCCCCCCCCCEEECCCEEEEEHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEE SHENQRDSPMACLQRVLDDLSEEEREMVRHSLFLGIERRDLVLAGTGAPQPQGAFLVRNL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH IGVDPKNGAVAVAEQIRAGQNVQFQLREAEASRQESELLLGAARERNTSPPLFGLLMACL HCCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH GRGHGLYGVPNGDVHIARKLMAELPIAGVFCNGEIGPAGGVGATHIHGYTACWGLLRHDP CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC SSSEPAKSV CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]