| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is psaL [H]
Identifier: 33864035
GI number: 33864035
Start: 1858412
End: 1858975
Strand: Direct
Name: psaL [H]
Synonym: PMT1768
Alternate gene names: 33864035
Gene position: 1858412-1858975 (Clockwise)
Preceding gene: 33864034
Following gene: 33864038
Centisome position: 77.08
GC content: 54.26
Gene sequence:
>564_bases ATGACTGACGAGAACCTGCCCCTAGGCCCCAAGACGCTCAACGAAAAGTACCGTGACCGAGGGCACGTAGAAGAGTGGGC TGTGCAGCCTGCTGCTGACCCCTGCGTCGGAAACCTGGCCACTCCAGTCAATAGTGGCTACTTCGTGAAAGCCTTAGTCA ACAATCTTCCCCTCTATCGCGAGGGTATTTCTGCAAACTTCCGCGGCTTGGAAACTGGTGCCGCGATCGGCTACTTCATT TACGGTCCCTTCCTTGTAATGGGTCCGTTAAGAACAACCGATTTTGCTACAACAGCAGCTTTATTGGCAACAGTTGGAGC AGTGCATATCCTTACTGCTCTTTTAGTGCTTTACAACGTCCCCGGCAAGGCACCCACCGTGCCACCCCCGGACGTCACTG TTGCTAACCCTCCTGCCGACCTGTTCACAAGGAAAGGCTGGGCAGACTTCACAAGTGGCTTTTGGCTGGGTGGCTGCGCG GGCGCGGCCTTTGCATGGTTCCTATGCAACACTTTGCACATGCAACCACTGCTGAATGTTCCCATGAATGTCTGGGCTTC TTAA
Upstream 100 bases:
>100_bases TGACACCGGCAATTTTCATTGTCCTAGTGGGTCGCCATATCACAGCTACCGACTGAGCTGTAGACGCTTAACCCCAGCCA ACCGACTCCCCTAATGCCGA
Downstream 100 bases:
>100_bases GAATCAAGAAGCTTTCACATCATCAAATCGAAAAGTAAAAAATCTTCTCCTGGGGTGGCTTGATTGCTTCCCCAGGTTTT TTATTGCTTCAAGAATGCCA
Product: photosystem I reaction center protein subunit XI
Products: NA
Alternate protein names: PSI subunit V; PSI-L [H]
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MTDENLPLGPKTLNEKYRDRGHVEEWAVQPAADPCVGNLATPVNSGYFVKALVNNLPLYREGISANFRGLETGAAIGYFI YGPFLVMGPLRTTDFATTAALLATVGAVHILTALLVLYNVPGKAPTVPPPDVTVANPPADLFTRKGWADFTSGFWLGGCA GAAFAWFLCNTLHMQPLLNVPMNVWAS
Sequences:
>Translated_187_residues MTDENLPLGPKTLNEKYRDRGHVEEWAVQPAADPCVGNLATPVNSGYFVKALVNNLPLYREGISANFRGLETGAAIGYFI YGPFLVMGPLRTTDFATTAALLATVGAVHILTALLVLYNVPGKAPTVPPPDVTVANPPADLFTRKGWADFTSGFWLGGCA GAAFAWFLCNTLHMQPLLNVPMNVWAS >Mature_186_residues TDENLPLGPKTLNEKYRDRGHVEEWAVQPAADPCVGNLATPVNSGYFVKALVNNLPLYREGISANFRGLETGAAIGYFIY GPFLVMGPLRTTDFATTAALLATVGAVHILTALLVLYNVPGKAPTVPPPDVTVANPPADLFTRKGWADFTSGFWLGGCAG AAFAWFLCNTLHMQPLLNVPMNVWAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the psaL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003757 - InterPro: IPR022980 - ProDom: PD005947 [H]
Pfam domain/function: PF02605 PsaL [H]
EC number: NA
Molecular weight: Translated: 20078; Mature: 19947
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDENLPLGPKTLNEKYRDRGHVEEWAVQPAADPCVGNLATPVNSGYFVKALVNNLPLYR CCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHH EGISANFRGLETGAAIGYFIYGPFLVMGPLRTTDFATTAALLATVGAVHILTALLVLYNV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGKAPTVPPPDVTVANPPADLFTRKGWADFTSGFWLGGCAGAAFAWFLCNTLHMQPLLNV CCCCCCCCCCCCEECCCCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC PMNVWAS CHHHCCC >Mature Secondary Structure TDENLPLGPKTLNEKYRDRGHVEEWAVQPAADPCVGNLATPVNSGYFVKALVNNLPLYR CCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHH EGISANFRGLETGAAIGYFIYGPFLVMGPLRTTDFATTAALLATVGAVHILTALLVLYNV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGKAPTVPPPDVTVANPPADLFTRKGWADFTSGFWLGGCAGAAFAWFLCNTLHMQPLLNV CCCCCCCCCCCCEECCCCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC PMNVWAS CHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA