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The map label for this gene is psbB [H]

Identifier: 33863932

GI number: 33863932

Start: 1769793

End: 1771325

Strand: Direct

Name: psbB [H]

Synonym: PMT1665

Alternate gene names: 33863932

Gene position: 1769793-1771325 (Clockwise)

Preceding gene: 33863925

Following gene: 33863933

Centisome position: 73.41

GC content: 53.88

Gene sequence:

>1533_bases
ATGGGATTGCCCTGGTATCGGGTGCACACGGTCGTCATCAACGACCCCGGCCGACTTCTGGCCGTGCACCTCATGCACAC
AGCCCTGTTAGCCGGCTGGGCCGGCTCCATGGCCCTCTACGAATTAGCCATCTTCGATCCTTCGGATCCCGTCCTCAACC
CCATGTGGCGGCAAGGCATGTATGTCATGCCGTTCATGACCCGCTGCGGAATTACTGGCAGCTGGGGGGGCTGGAGCATC
ACCGGTGAAACCGGTGTTGATCCAGGCCTCTGGAGCTTCGAAGGTGTTGCTGCCGCTCACATCATCTTCAGTGGCCTGTT
AATGCTGGCCGCAATCTGGCACTGGACCTACTGGGATCTTGATCTTTGGCTAGATCCACGTACTCAAGAACCTGCTTTAG
ACCTTCCAAAAATCTTCGGCATCCACCTGACACTTGCAGGTGCTGTTTGCTTCGGCTTTGGAGCCTTCCATCTATCTGGA
CTTTATGGTCCTGGGATGTGGGTCTCTGATTCCTATGGACTAACAGGTCATATGGAGAATGTCGCGCCCGAATGGGGTGC
TGCAGGATTCAACCCCTTCAGCCCAGGCGGCATTGTGGCGAACCACATTGCTGCAGGAATCTTTGGATTCCTTGGTGGCC
ATTTCCAAATGCTCAACCGCCCACCTGAAAGGCTTTACAAAGCCCTTCGCATGGGCAATATCGAAACAGTCTTAGCCAGT
GGTTGTGCTGCTGTTTGCGCAATTGCCTTCATCGTTTCAGGAACGATGTGGTATGGATCTGCAGCCACACCTGTTGAACT
GTTTGGACCTACCCGTTATCAGTGGGACCAAAATTTCTACAGAACTGAAATCAACCGTCGTGTCCAGTCAGCCATGGATG
AAGGCGCTACTCAAGAGGCGGCATATGCCGCTATCCCTGAGAAGCTTGCCTTCTACGACTACGTAGGTAACAGCCCTGCA
AAGGGTGGTCTATTTAGGGTTGGTGCCATGGTGAATGGCGACGGTCTTGCTACTGGCTGGCTCGGCCACATCACGTTCAA
AGACAAGGCAGGCAATGATCTGCAGGTCCGTCGCATCCCGAATTTCTTCGAGAACTTCCCTGTGTTACTCGAAGATCAGA
ATGGCGTCGTGCGTGCTGACATCCCCTTCCGCCGTGCTGAAGCAAAGAATTCCTTTGAGCAGCAAGGCGTAACGGCAACC
ATCTATGGCGGTTCCATGGATGGGAAAACCTTCACTGATACCGCTGATGTGAAGCGTCTGGCTCGCAAGGCTCAACTTGG
TGAAGCCTTTACTTTCGACCGCGAGACCTATGCTTCGGACGGTGTTTTCCGAAGCTCACCTCGAGGCTGGTTCACCTTTG
CTCACGTCAACTTTGCGCTCTTGTTCCTATTCGGCCACTGGTGGCATGCAGCTAGGACCTTGTACCGCGATGTGTTTGCC
GGTATCGATCCTGACCTCGGCGACCAAGTTGAATTCGGTGTTTTCCAAAAGTTGGGCGACTCTTCTACTCGTCGCGTTCC
AGGGCAAACTTAA

Upstream 100 bases:

>100_bases
GCAGCTAGCGACAACCTTCTCCACACTTAATGGTGCACGTCTTACGATCTGCGGGTCTGGCTGCATTAGCAGCTTCGTTT
CGTTCCCCCGAACCTGACCC

Downstream 100 bases:

>100_bases
GCCTTCCACAGGAACTACACCTTCAGCTGATCGACCTTACGGAGACTCTCAATGGATGCTTTTGCTTACACCCTCTTAAT
GACCCTGGTGGTTGCCACTC

Product: photosystem II PsbB protein (CP47)

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDPVLNPMWRQGMYVMPFMTRCGITGSWGGWSI
TGETGVDPGLWSFEGVAAAHIIFSGLLMLAAIWHWTYWDLDLWLDPRTQEPALDLPKIFGIHLTLAGAVCFGFGAFHLSG
LYGPGMWVSDSYGLTGHMENVAPEWGAAGFNPFSPGGIVANHIAAGIFGFLGGHFQMLNRPPERLYKALRMGNIETVLAS
GCAAVCAIAFIVSGTMWYGSAATPVELFGPTRYQWDQNFYRTEINRRVQSAMDEGATQEAAYAAIPEKLAFYDYVGNSPA
KGGLFRVGAMVNGDGLATGWLGHITFKDKAGNDLQVRRIPNFFENFPVLLEDQNGVVRADIPFRRAEAKNSFEQQGVTAT
IYGGSMDGKTFTDTADVKRLARKAQLGEAFTFDRETYASDGVFRSSPRGWFTFAHVNFALLFLFGHWWHAARTLYRDVFA
GIDPDLGDQVEFGVFQKLGDSSTRRVPGQT

Sequences:

>Translated_510_residues
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDPVLNPMWRQGMYVMPFMTRCGITGSWGGWSI
TGETGVDPGLWSFEGVAAAHIIFSGLLMLAAIWHWTYWDLDLWLDPRTQEPALDLPKIFGIHLTLAGAVCFGFGAFHLSG
LYGPGMWVSDSYGLTGHMENVAPEWGAAGFNPFSPGGIVANHIAAGIFGFLGGHFQMLNRPPERLYKALRMGNIETVLAS
GCAAVCAIAFIVSGTMWYGSAATPVELFGPTRYQWDQNFYRTEINRRVQSAMDEGATQEAAYAAIPEKLAFYDYVGNSPA
KGGLFRVGAMVNGDGLATGWLGHITFKDKAGNDLQVRRIPNFFENFPVLLEDQNGVVRADIPFRRAEAKNSFEQQGVTAT
IYGGSMDGKTFTDTADVKRLARKAQLGEAFTFDRETYASDGVFRSSPRGWFTFAHVNFALLFLFGHWWHAARTLYRDVFA
GIDPDLGDQVEFGVFQKLGDSSTRRVPGQT
>Mature_509_residues
GLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDPVLNPMWRQGMYVMPFMTRCGITGSWGGWSIT
GETGVDPGLWSFEGVAAAHIIFSGLLMLAAIWHWTYWDLDLWLDPRTQEPALDLPKIFGIHLTLAGAVCFGFGAFHLSGL
YGPGMWVSDSYGLTGHMENVAPEWGAAGFNPFSPGGIVANHIAAGIFGFLGGHFQMLNRPPERLYKALRMGNIETVLASG
CAAVCAIAFIVSGTMWYGSAATPVELFGPTRYQWDQNFYRTEINRRVQSAMDEGATQEAAYAAIPEKLAFYDYVGNSPAK
GGLFRVGAMVNGDGLATGWLGHITFKDKAGNDLQVRRIPNFFENFPVLLEDQNGVVRADIPFRRAEAKNSFEQQGVTATI
YGGSMDGKTFTDTADVKRLARKAQLGEAFTFDRETYASDGVFRSSPRGWFTFAHVNFALLFLFGHWWHAARTLYRDVFAG
IDPDLGDQVEFGVFQKLGDSSTRRVPGQT

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56164; Mature: 56033

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHCCE
YVMPFMTRCGITGSWGGWSITGETGVDPGLWSFEGVAAAHIIFSGLLMLAAIWHWTYWDL
EEEEHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
DLWLDPRTQEPALDLPKIFGIHLTLAGAVCFGFGAFHLSGLYGPGMWVSDSYGLTGHMEN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHH
VAPEWGAAGFNPFSPGGIVANHIAAGIFGFLGGHFQMLNRPPERLYKALRMGNIETVLAS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCHHHHHHH
GCAAVCAIAFIVSGTMWYGSAATPVELFGPTRYQWDQNFYRTEINRRVQSAMDEGATQEA
HHHHHHHHHHHHHCHHEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
AYAAIPEKLAFYDYVGNSPAKGGLFRVGAMVNGDGLATGWLGHITFKDKAGNDLQVRRIP
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEECEEEEEEEECCCCCCEEEEECC
NFFENFPVLLEDQNGVVRADIPFRRAEAKNSFEQQGVTATIYGGSMDGKTFTDTADVKRL
HHHHCCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
ARKAQLGEAFTFDRETYASDGVFRSSPRGWFTFAHVNFALLFLFGHWWHAARTLYRDVFA
HHHHHCCCCEECCCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIDPDLGDQVEFGVFQKLGDSSTRRVPGQT
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GLPWYRVHTVVINDPGRLLAVHLMHTALLAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHCCE
YVMPFMTRCGITGSWGGWSITGETGVDPGLWSFEGVAAAHIIFSGLLMLAAIWHWTYWDL
EEEEHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
DLWLDPRTQEPALDLPKIFGIHLTLAGAVCFGFGAFHLSGLYGPGMWVSDSYGLTGHMEN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHH
VAPEWGAAGFNPFSPGGIVANHIAAGIFGFLGGHFQMLNRPPERLYKALRMGNIETVLAS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCHHHHHHH
GCAAVCAIAFIVSGTMWYGSAATPVELFGPTRYQWDQNFYRTEINRRVQSAMDEGATQEA
HHHHHHHHHHHHHCHHEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
AYAAIPEKLAFYDYVGNSPAKGGLFRVGAMVNGDGLATGWLGHITFKDKAGNDLQVRRIP
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEECEEEEEEEECCCCCCEEEEECC
NFFENFPVLLEDQNGVVRADIPFRRAEAKNSFEQQGVTATIYGGSMDGKTFTDTADVKRL
HHHHCCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
ARKAQLGEAFTFDRETYASDGVFRSSPRGWFTFAHVNFALLFLFGHWWHAARTLYRDVFA
HHHHHCCCCEECCCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIDPDLGDQVEFGVFQKLGDSSTRRVPGQT
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8318542 [H]