| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33863875
Identifier: 33863875
GI number: 33863875
Start: 1708841
End: 1709938
Strand: Direct
Name: 33863875
Synonym: PMT1608
Alternate gene names: NA
Gene position: 1708841-1709938 (Clockwise)
Preceding gene: 33863874
Following gene: 33863877
Centisome position: 70.88
GC content: 54.1
Gene sequence:
>1098_bases GTGACCCAAGCCTTATCTTCTATGGCACGTCTCACCATCCGTCAGCTCCGCCAAGTAGCCAGCGATTTGGGCGTAACCCT TTACAGCCGCAAGACCAAGGAACAATTGCTCAACGCTATTACTGTTCGTCAGGAAAAAGAAGAAAGCAAACGACTGGGGC TAGACGGTGAACTCAACTCCCCATCCAGACTCAAGTCCGATACTCGAGTGGTTTTCCTACCCCGAGATCCTCAATGGGCT TATGTCTTCTGGGAAATCTCCGAAACTGATCGCAAGCGAGCCCTATCGAAAGGGGCCAACCGGCTCTGCCTACGCTTAAC CGACGTAACCGGCATCGATGACGACAAAGCACATCCCCACACACTCCAGGAAGTCTCTGTAGACAGCCACAGCAACGAAT GGTACCTACCTGTTCCAATGCCTGATAGGGACTATCGAGTTGAACTCGGCTATCGCGTCGGTACTCTCTGGATGTCCCTG GCCTTTTCCTCTATAGCCAAAGTCCCAACACTCCACCCCAGCGAGCAAATCCTCGATCAGTTTGTTCCCTTCAGCCTTGA GGGCATCACAAGCAGTCCTGCACCCACCGCTACACAAGCACCAGAGCTAGAGGATGATCCCATTGGCGACTCAATCGATA GCGGGCTACACGAGCGGCTCTATCAGAGCGCCACACAACACTTCCGCAGCAGCAGGGTCGGTTCGGAAGTCTTCCAAGAA CACAACGGCTTGGATAGCGATCAACGTGGTCTGAACGATTCAGGCATCGGCCTTTGGGCCAGTGGGCGTAATGAGTCCGG ACTGGGTGGAGTACCACCACGCCCAAAAACCTTCTGGCTTATTGCCGACGCTGAGCTGATGATCTACGGCGCAACAGATC CTTCTGCCCGCCTAACCATCGGCGGCGAAGACATTCCTCTCTCCAATGATGGAACCTTCCGAATCCAAGTTCCCTTCCGC GACGGAGAGCAGGTGTATGCGATTGAGGCGACTGCGGCCGACGGTGAGCAGAAACGCAATATCACCTTGAACTTCCAACG GAGAACACCCACCGATAACACAAACCCAGAAGACCAGGCAGTCGCAGAATGGTTTTAA
Upstream 100 bases:
>100_bases AGTGCGGTCAGTAGATGCTGACCACCAGAGCTCTAACCACCCGTAAACGACCAATTGCCCACAGAATGTGATCCCAAACA AAAACGGAGTGTTTTTAGAC
Downstream 100 bases:
>100_bases ATGAGCTCCCCAGATCATGACGACGTTGCGTAGGTTTGTCGCCATCACTCCCCTCGCTGGGGCGATCATCCTCCCTCTCG TTGTACCCCTCAGCATGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MTQALSSMARLTIRQLRQVASDLGVTLYSRKTKEQLLNAITVRQEKEESKRLGLDGELNSPSRLKSDTRVVFLPRDPQWA YVFWEISETDRKRALSKGANRLCLRLTDVTGIDDDKAHPHTLQEVSVDSHSNEWYLPVPMPDRDYRVELGYRVGTLWMSL AFSSIAKVPTLHPSEQILDQFVPFSLEGITSSPAPTATQAPELEDDPIGDSIDSGLHERLYQSATQHFRSSRVGSEVFQE HNGLDSDQRGLNDSGIGLWASGRNESGLGGVPPRPKTFWLIADAELMIYGATDPSARLTIGGEDIPLSNDGTFRIQVPFR DGEQVYAIEATAADGEQKRNITLNFQRRTPTDNTNPEDQAVAEWF
Sequences:
>Translated_365_residues MTQALSSMARLTIRQLRQVASDLGVTLYSRKTKEQLLNAITVRQEKEESKRLGLDGELNSPSRLKSDTRVVFLPRDPQWA YVFWEISETDRKRALSKGANRLCLRLTDVTGIDDDKAHPHTLQEVSVDSHSNEWYLPVPMPDRDYRVELGYRVGTLWMSL AFSSIAKVPTLHPSEQILDQFVPFSLEGITSSPAPTATQAPELEDDPIGDSIDSGLHERLYQSATQHFRSSRVGSEVFQE HNGLDSDQRGLNDSGIGLWASGRNESGLGGVPPRPKTFWLIADAELMIYGATDPSARLTIGGEDIPLSNDGTFRIQVPFR DGEQVYAIEATAADGEQKRNITLNFQRRTPTDNTNPEDQAVAEWF >Mature_364_residues TQALSSMARLTIRQLRQVASDLGVTLYSRKTKEQLLNAITVRQEKEESKRLGLDGELNSPSRLKSDTRVVFLPRDPQWAY VFWEISETDRKRALSKGANRLCLRLTDVTGIDDDKAHPHTLQEVSVDSHSNEWYLPVPMPDRDYRVELGYRVGTLWMSLA FSSIAKVPTLHPSEQILDQFVPFSLEGITSSPAPTATQAPELEDDPIGDSIDSGLHERLYQSATQHFRSSRVGSEVFQEH NGLDSDQRGLNDSGIGLWASGRNESGLGGVPPRPKTFWLIADAELMIYGATDPSARLTIGGEDIPLSNDGTFRIQVPFRD GEQVYAIEATAADGEQKRNITLNFQRRTPTDNTNPEDQAVAEWF
Specific function: Unknown
COG id: COG3330
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40784; Mature: 40653
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQALSSMARLTIRQLRQVASDLGVTLYSRKTKEQLLNAITVRQEKEESKRLGLDGELNS CCHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PSRLKSDTRVVFLPRDPQWAYVFWEISETDRKRALSKGANRLCLRLTDVTGIDDDKAHPH CHHCCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC TLQEVSVDSHSNEWYLPVPMPDRDYRVELGYRVGTLWMSLAFSSIAKVPTLHPSEQILDQ HHHHEECCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVPFSLEGITSSPAPTATQAPELEDDPIGDSIDSGLHERLYQSATQHFRSSRVGSEVFQE HCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HNGLDSDQRGLNDSGIGLWASGRNESGLGGVPPRPKTFWLIADAELMIYGATDPSARLTI HCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEE GGEDIPLSNDGTFRIQVPFRDGEQVYAIEATAADGEQKRNITLNFQRRTPTDNTNPEDQA CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHH VAEWF HHHCC >Mature Secondary Structure TQALSSMARLTIRQLRQVASDLGVTLYSRKTKEQLLNAITVRQEKEESKRLGLDGELNS CHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PSRLKSDTRVVFLPRDPQWAYVFWEISETDRKRALSKGANRLCLRLTDVTGIDDDKAHPH CHHCCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC TLQEVSVDSHSNEWYLPVPMPDRDYRVELGYRVGTLWMSLAFSSIAKVPTLHPSEQILDQ HHHHEECCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH FVPFSLEGITSSPAPTATQAPELEDDPIGDSIDSGLHERLYQSATQHFRSSRVGSEVFQE HCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HNGLDSDQRGLNDSGIGLWASGRNESGLGGVPPRPKTFWLIADAELMIYGATDPSARLTI HCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEE GGEDIPLSNDGTFRIQVPFRDGEQVYAIEATAADGEQKRNITLNFQRRTPTDNTNPEDQA CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHH VAEWF HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA