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The map label for this gene is kaiC [H]

Identifier: 33863685

GI number: 33863685

Start: 1506391

End: 1507890

Strand: Reverse

Name: kaiC [H]

Synonym: PMT1418

Alternate gene names: 33863685

Gene position: 1507890-1506391 (Counterclockwise)

Preceding gene: 33863686

Following gene: 33863682

Centisome position: 62.55

GC content: 47.73

Gene sequence:

>1500_bases
ATGCAGTCTTCTAGTGCCGGTGGATCCTCCCATATGCAGGTGCAGAAGCTGCCTACTGGGATCGAAGGTTTTGATGACAT
CTGTCATGGCGGCTTGCCGTCGGGGCGTAGCACGCTGATCAGTGGCACGTCGGGTACAGGCAAGACAGTCTTTTCACTTC
ATTTTTTGCACAACGGGATTACCCAGTTCGATGAGCCTGGAATCTTCGTGACCTTCGAAGAGTCTCCATCAGATATTTTG
CGAAATTCCGCCAGCTTTGGTTGGAATCTTCAAGAGATGGTGGAGCAGGATAAATTATTCATACTCGATGCTTCACCGGA
TCCTGATGGTCAGGATGTTGCAGGCAGCTTTGATCTTTCAGGGTTAATTGAAAGGATTAATTACGCCATTGTTAAATATA
AAGCGAAACGGGTAGCAATCGATTCCATGACAGCTGTTTTCCAACAGTACGACGCAATTTCTGTTGTGCGTAGGGAAATC
TTTCGCTTGATTGCACGTCTTAAGGTGATTGGCGTTACCACCGTAATGACCACAGAACGGATTGATGAATATGGCCCAAT
TGCACGCTATGGGGTAGAGGAGTTTGTCTCCGACAACGTCGTTATCCTACGCAATGTTCTTGAGACTGAGAAGCGTCGAC
GTACCGTTGAAATTCTCAAGTTACGTGGCACAACTCACATGAAGGGTGAGTTTCCATTCACCATGGGCACCCACGGCGTC
AGCGTCTTCCCTTTAGGCGCAATGCGGCTTACGCAGCGTTCCTCCAACGTGCGGATTAGTTCTGGTGTCCCTAATCTTGA
TGAGATGTGTGGTGGAGGTTTCTTCAAGGATTCGATCATTCTTGTTACTGGTGCAACGGGGACTGGTAAAACCCTTTTGG
TGTCGAAGTTTATTGAGGATGCTTTCCGAAATCAGGAACGCGCGATTCTGTTTGCCTATGAGGAGTCGCGAGCCCAGCTG
CTGCGTAATGCCACCAGTTGGGGGATTGATTTTGAAGAGATGGAAAGGCAAGGCCTGTTGAAGATTATTTGTGCTTATCC
AGAGTCGACTGGCCTGGAAGATCATCTGGAGATTATTAAAACGGCGATTGGACAATTCAAGCCATCGAGGATGGCGATTG
ATTCACTTTCGGCCCTTGCACGTGGCGTGAGCCTCAACGCCTTTAGGCAGTTTGTGATCGGAGTAACAGGTTATGCAAAG
CAGGAAGAAATAGCGGGATTCTTTACCAATACTGCTGAAGAGTTTATGGGAAGTCATTCGATTACCGACTCCCATATCTC
CACAATCACAGACACTATTCTGCTGCTTCAGTATGTGGAGATCCGCGGCGAGATGGCCAGAGCTGTGAATGTATTTAAGA
TGCGTGGCTCATGGCACGACAAGAGAATTCGTGAGTATGTTATTACTGATAATGGCCCACAGATTAAAGACTCCTTCTCT
AACTTCGAACGGATCTTCAGTGGTGCTCCTCATCGTATTACTGACGACGAACGAGCTTAA

Upstream 100 bases:

>100_bases
GGCAGACGATGACATTGCGTCGCCAGATTCTTAAGGCTCGCGGTGCAGCGCTTTGTTTCATGGCTGATTTTCTCTAGCGT
TTGAGTAGAACGTCCTAGCT

Downstream 100 bases:

>100_bases
TTTTGCTTCCATGCCAAGGGTCTTAAAACCACTTATTGATTCAGGTTATTGACTGAATTAGGCTGAATTAGAGTTCTAAA
CCTTGCTCTTGTTGCCGAGT

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MQSSSAGGSSHMQVQKLPTGIEGFDDICHGGLPSGRSTLISGTSGTGKTVFSLHFLHNGITQFDEPGIFVTFEESPSDIL
RNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLSGLIERINYAIVKYKAKRVAIDSMTAVFQQYDAISVVRREI
FRLIARLKVIGVTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLETEKRRRTVEILKLRGTTHMKGEFPFTMGTHGV
SVFPLGAMRLTQRSSNVRISSGVPNLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFIEDAFRNQERAILFAYEESRAQL
LRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIKTAIGQFKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAVNVFKMRGSWHDKRIREYVITDNGPQIKDSFS
NFERIFSGAPHRITDDERA

Sequences:

>Translated_499_residues
MQSSSAGGSSHMQVQKLPTGIEGFDDICHGGLPSGRSTLISGTSGTGKTVFSLHFLHNGITQFDEPGIFVTFEESPSDIL
RNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLSGLIERINYAIVKYKAKRVAIDSMTAVFQQYDAISVVRREI
FRLIARLKVIGVTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLETEKRRRTVEILKLRGTTHMKGEFPFTMGTHGV
SVFPLGAMRLTQRSSNVRISSGVPNLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFIEDAFRNQERAILFAYEESRAQL
LRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIKTAIGQFKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAVNVFKMRGSWHDKRIREYVITDNGPQIKDSFS
NFERIFSGAPHRITDDERA
>Mature_499_residues
MQSSSAGGSSHMQVQKLPTGIEGFDDICHGGLPSGRSTLISGTSGTGKTVFSLHFLHNGITQFDEPGIFVTFEESPSDIL
RNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLSGLIERINYAIVKYKAKRVAIDSMTAVFQQYDAISVVRREI
FRLIARLKVIGVTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLETEKRRRTVEILKLRGTTHMKGEFPFTMGTHGV
SVFPLGAMRLTQRSSNVRISSGVPNLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFIEDAFRNQERAILFAYEESRAQL
LRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIKTAIGQFKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAVNVFKMRGSWHDKRIREYVITDNGPQIKDSFS
NFERIFSGAPHRITDDERA

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 55455; Mature: 55455

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSSSAGGSSHMQVQKLPTGIEGFDDICHGGLPSGRSTLISGTSGTGKTVFSLHFLHNGI
CCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEEHHHHHCCC
TQFDEPGIFVTFEESPSDILRNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLS
HHCCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
GLIERINYAIVKYKAKRVAIDSMTAVFQQYDAISVVRREIFRLIARLKVIGVTTVMTTER
HHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDEYGPIARYGVEEFVSDNVVILRNVLETEKRRRTVEILKLRGTTHMKGEFPFTMGTHGV
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCC
SVFPLGAMRLTQRSSNVRISSGVPNLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFIED
EEEECCHHHHHHCCCCEEEECCCCCHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHH
AFRNQERAILFAYEESRAQLLRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIK
HHCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
TAIGQFKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNTAEEFMGSHS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
ITDSHISTITDTILLLQYVEIRGEMARAVNVFKMRGSWHDKRIREYVITDNGPQIKDSFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCHHHHHH
NFERIFSGAPHRITDDERA
HHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQSSSAGGSSHMQVQKLPTGIEGFDDICHGGLPSGRSTLISGTSGTGKTVFSLHFLHNGI
CCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEEHHHHHCCC
TQFDEPGIFVTFEESPSDILRNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLS
HHCCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
GLIERINYAIVKYKAKRVAIDSMTAVFQQYDAISVVRREIFRLIARLKVIGVTTVMTTER
HHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDEYGPIARYGVEEFVSDNVVILRNVLETEKRRRTVEILKLRGTTHMKGEFPFTMGTHGV
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCC
SVFPLGAMRLTQRSSNVRISSGVPNLDEMCGGGFFKDSIILVTGATGTGKTLLVSKFIED
EEEECCHHHHHHCCCCEEEECCCCCHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHH
AFRNQERAILFAYEESRAQLLRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIK
HHCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
TAIGQFKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNTAEEFMGSHS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
ITDSHISTITDTILLLQYVEIRGEMARAVNVFKMRGSWHDKRIREYVITDNGPQIKDSFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCHHHHHH
NFERIFSGAPHRITDDERA
HHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917641 [H]