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The map label for this gene is ygaF [H]

Identifier: 33863283

GI number: 33863283

Start: 1088034

End: 1088597

Strand: Direct

Name: ygaF [H]

Synonym: PMT1012

Alternate gene names: 33863283

Gene position: 1088034-1088597 (Clockwise)

Preceding gene: 33863282

Following gene: 33863284

Centisome position: 45.13

GC content: 53.9

Gene sequence:

>564_bases
GTGAAACGGTCTGAACTCTTGAGAGTCATAACAGGGGCGGCAGTGTTGAGTATCAGCCAATGTCTTGGGCGCCCAAGCCA
AGCCTTGGCAATGGAGGGAAAGCTTCCTGCTCTAGACGCCCAAGCCCCAGACTTTGAGCTAGAGGCCGCTGCTCAAGAAG
GTGCGCTGGCTGAGAAATTACAACGTGATGCCTTTCTAGGCAGTTGGCTGGTTCTTTACTTCTACCCTCGCGACTTCACC
AGTGGCTGCACTCTGGAGGCGCGTGGATTCCAGCGAGATCTCTCAGACTTTAAAGCTGCAGGTGCGGCAGTGGTAGGAGT
CAGCGCTGATGGCACCGAAGAGCACGTGAGCTTCTGTAGCAGCGAAGGCCTTGGATACACACTGTTGTCTGACCCAGGTG
GAGTCGTAAGCGAAAGGTATGGATCATGGAGTTCACCATTCAGCCAACGTCACACATTTCTGATTGATCCCGATGGCATC
CTTCGCGCTCGCTGGAAAGACGTAAGTCCATCTCGCCATAGTCAAGATGTGCTGCGAGCGTTGAAGGAACTTCAGCAGTC
GTAA

Upstream 100 bases:

>100_bases
AATTCAACTGCTTGAGATCACAATCATCAGATTCATTTGCCAGATTAGCTCCGCCGTGAAGTTGTTATGACTAATCTCTT
CTGCAGTTGGCTTGATACCG

Downstream 100 bases:

>100_bases
ATGAATCGCGAGAGAAAGAGACCATCTACCTTCTGCACAAACAGCGAAAAACTTTTCGCAAACAGGAAGATTGATAGCGA
AAATATCTATAAATTGCCTG

Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKRSELLRVITGAAVLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFT
SGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPDGI
LRARWKDVSPSRHSQDVLRALKELQQS

Sequences:

>Translated_187_residues
MKRSELLRVITGAAVLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFT
SGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPDGI
LRARWKDVSPSRHSQDVLRALKELQQS
>Mature_187_residues
MKRSELLRVITGAAVLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFT
SGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPDGI
LRARWKDVSPSRHSQDVLRALKELQQS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI5802974, Length=160, Percent_Identity=33.125, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI32483377, Length=186, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI32189392, Length=156, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1788825, Length=150, Percent_Identity=36, Blast_Score=87, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17554494, Length=133, Percent_Identity=33.8345864661654, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17738015, Length=188, Percent_Identity=33.5106382978723, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24656348, Length=161, Percent_Identity=31.6770186335404, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17864676, Length=161, Percent_Identity=31.6770186335404, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 20312; Mature: 20312

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSELLRVITGAAVLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKL
CCHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHH
QRDAFLGSWLVLYFYPRDFTSGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCS
HHHHHHHHEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
SEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPDGILRARWKDVSPSRHSQDVLRA
CCCCCEEEECCCCCHHHHHCCCCCCCHHHCCEEEECCCCCEEHHCCCCCCCCCHHHHHHH
LKELQQS
HHHHHCC
>Mature Secondary Structure
MKRSELLRVITGAAVLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKL
CCHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHH
QRDAFLGSWLVLYFYPRDFTSGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCS
HHHHHHHHEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
SEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPDGILRARWKDVSPSRHSQDVLRA
CCCCCEEEECCCCCHHHHHCCCCCCCHHHCCEEEECCCCCEEHHCCCCCCCCCHHHHHHH
LKELQQS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]