| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is dnaG [H]
Identifier: 33862914
GI number: 33862914
Start: 692462
End: 694516
Strand: Reverse
Name: dnaG [H]
Synonym: PMT0641
Alternate gene names: 33862914
Gene position: 694516-692462 (Counterclockwise)
Preceding gene: 33862915
Following gene: 33862913
Centisome position: 28.81
GC content: 54.06
Gene sequence:
>2055_bases ATGCCCGTCCCCCGTCTTCACCCGCGCACGATCGAGGCCGTCAAGGAGCGTGCCGACATTGTTGATGTCGTTGGCGAACA TGTGGTTCTAAAGAAAAAGGGCCGTGAATTCGTAGGGATCTGTCCGTTCCATGACGACAGCAAACCATCGATGACGGTCT CGCCAGCGAAGCAGTTTTATTACTGCTTCTCTTGTGGAGCTGGTGGAAACTCGATCAAGTTCCTGATGGAGTTTCAGCGC CAGAGTTTTGGTGATGTGGTGCTGGAGCTTGCTCGCAAGTATCAACTACCTGTTGAGACGGTCGAGGGGCCCCAGCAGGA ACGACTACGTCAGCAGCTCTCTCGTCGAGACAAGCTTCATCGTGCGCTTGCATTGGCGGCCGGTTGGTTTCGTGGCCAGC TGCGTACGCCAGTTGGTGCAAGTGCGCTGAATTACCTCACTGAGAAGCGGGGCCTTAGTGAAGTCACCTTGGAATCCTTC GAGCTTGGCTATGCCCCTGAGCAATGGGATGGTTTACTCAAGCACCTCCAGCAGGTGGAAGGTTTGTCTGCTGAATTACT GGAAGCCGCCGGGCTTGTTGTGGCGCGCAAGGGGGGAGGAGGTTTTTACGATCGCTTTCGTCATCGTGTGATGGTGCCGA TCCACGACCGCCAGGGAAGGGTGATTGGTTTCGGTGGACGCAGTCTTGATGGCTCAGAGCCGAAGTACCTCAACTCTCCT GAGACAGACGTGTTCGAGAAAGGCAAGCATTTGTTTGGACTGGATCGAGCGGCGAATGCCATCCGTAAGGATGACCGGGC TGTGGTAGTCGAAGGATATTTCGATGTCATTGCATTGCATGCTGCAGGTGTCACCAATTCAGTGGCCTCCTTAGGCACTG CTTTGAGTAGTCAGCAGATCACCCAGATCTGCCGTTGCAGCGAAGGGAAGCGGATCGTGCTTAATTTTGATGCTGATGGA GCCGGTGTTCGTGCTGCGAACCGAGCCATTGGCGAAGTTGAGCAACTGGCTTTGCAAGGCCAGTTGGAATTACGAGTGCT TCATTTGCCTTCTGGCAAAGACCCCGATGAATTTCTCAAAGATCATGGTGCTGGCGATTACAGGGCTCTATTAGATCAGT CACCTCTTTGGCTTGATTGGCAGATTCAACAGGTGTTGGAGGGCCGTGATTTAAGTCAAGCGGATCAGTTTCAGCAAGCA GTGAGTGGCCTGGTTGCATTGCTCGGCAAGTTGCCCCAGTCGGCCGTACGGACCCACTACCTGCAACAGGTTGCCGAACG CTTGAGCGGTGGGCAGGGCCGGTTGGCCTTGCAGTTGGAGGAAGACCTGCGCCAACAAGTGAAAGGGCAGCGCTGGCATG GCCGCTCAAGTCGCCATGAGCAACCTGGCGAGGCCAGTCAACGGGAGCGCAGCGAAGCGGAAATACTGAGGTTATATCTC CATTGCTCAAATCATCGGGCTGCCATTCGCAGGGAGTTACGACAGCGAGAGCTGGAGGATTTTGCCTTACAACATCACCG TTTGCTTTGGGCGGCGATCACTGATTTGGAGGAAACCAATCTTGGTGCAGGACGTTTAGAGGCGATCAGTCGCGGAACTG ACTCTGGTCATGATTTGGAGGATATTGAGTTGCCACGGCTGCTTACCGATCAATTGCTCCTGGAGAACAGTGCTCTAGTC GCTCGTCTTACCCCGTTATTAGAGCCTGGCGAGGTTCATTTGGCGGCTATGGCTAAGCCACTGCTTCAGCTCCGGGGCAC AGCAGCGGCTCTAGAACGCCAGAAATCCCTCAAGCGTTGTCGTCATCTTCTTGAGGCCTGGGGTGGTCAGCGTCTTGAAA CTCTTGAGCGTTGTATTGCTGCTTTGATTCAAGAAGAGCGACAGCAACCTACTGAATCAGTCGATATGGAAAAGCGTATC GAAGCAATGTTTGAGGAGCTCAACAGCGATGCGTTGCGTTTCCAGGAGCTTTATTACAGCGAGCGCAAGCATATTGGTCA CTTAGATCAGCAGCGGTGTGGTGGGTTCTCAGGCCAGGATGTCATTCCGGCTTAG
Upstream 100 bases:
>100_bases TTGAGTTCTTATTGATCTCGGCCTTGCTTGTCGTATCGATTGATTTTGCTGATCATGTTCTCTTCTCGACCTCTCACGGC GCAACCAGCAAAATAAGGTC
Downstream 100 bases:
>100_bases GTCATCAGTCTGTGGATGCGCTTCACAAGCCAATCGGCGATATCAAAGAACTTGTTGTCTTGATTGACCATCACGATTCC TGCTTGCATCTTCTCGCTGA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 684; Mature: 683
Protein sequence:
>684_residues MPVPRLHPRTIEAVKERADIVDVVGEHVVLKKKGREFVGICPFHDDSKPSMTVSPAKQFYYCFSCGAGGNSIKFLMEFQR QSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKLHRALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESF ELGYAPEQWDGLLKHLQQVEGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSP ETDVFEKGKHLFGLDRAANAIRKDDRAVVVEGYFDVIALHAAGVTNSVASLGTALSSQQITQICRCSEGKRIVLNFDADG AGVRAANRAIGEVEQLALQGQLELRVLHLPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQA VSGLVALLGKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHGRSSRHEQPGEASQRERSEAEILRLYL HCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETNLGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALV ARLTPLLEPGEVHLAAMAKPLLQLRGTAAALERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEERQQPTESVDMEKRI EAMFEELNSDALRFQELYYSERKHIGHLDQQRCGGFSGQDVIPA
Sequences:
>Translated_684_residues MPVPRLHPRTIEAVKERADIVDVVGEHVVLKKKGREFVGICPFHDDSKPSMTVSPAKQFYYCFSCGAGGNSIKFLMEFQR QSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKLHRALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESF ELGYAPEQWDGLLKHLQQVEGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSP ETDVFEKGKHLFGLDRAANAIRKDDRAVVVEGYFDVIALHAAGVTNSVASLGTALSSQQITQICRCSEGKRIVLNFDADG AGVRAANRAIGEVEQLALQGQLELRVLHLPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQA VSGLVALLGKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHGRSSRHEQPGEASQRERSEAEILRLYL HCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETNLGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALV ARLTPLLEPGEVHLAAMAKPLLQLRGTAAALERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEERQQPTESVDMEKRI EAMFEELNSDALRFQELYYSERKHIGHLDQQRCGGFSGQDVIPA >Mature_683_residues PVPRLHPRTIEAVKERADIVDVVGEHVVLKKKGREFVGICPFHDDSKPSMTVSPAKQFYYCFSCGAGGNSIKFLMEFQRQ SFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKLHRALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESFE LGYAPEQWDGLLKHLQQVEGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSPE TDVFEKGKHLFGLDRAANAIRKDDRAVVVEGYFDVIALHAAGVTNSVASLGTALSSQQITQICRCSEGKRIVLNFDADGA GVRAANRAIGEVEQLALQGQLELRVLHLPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAV SGLVALLGKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHGRSSRHEQPGEASQRERSEAEILRLYLH CSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETNLGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALVA RLTPLLEPGEVHLAAMAKPLLQLRGTAAALERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEERQQPTESVDMEKRIE AMFEELNSDALRFQELYYSERKHIGHLDQQRCGGFSGQDVIPA
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=428, Percent_Identity=38.0841121495327, Blast_Score=283, Evalue=2e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 76632; Mature: 76501
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVPRLHPRTIEAVKERADIVDVVGEHVVLKKKGREFVGICPFHDDSKPSMTVSPAKQFY CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCEEECCHHHEE YCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKLH EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHH RALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQVE HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHC GLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSP CCHHHHHHHCCEEEEECCCCCHHHHHCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC ETDVFEKGKHLFGLDRAANAIRKDDRAVVVEGYFDVIALHAAGVTNSVASLGTALSSQQI CHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH TQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLHLPSGKDPDEFLK HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH DHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALLGKLPQSAVRTHY HCCCCHHHHHHCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH LQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHGRSSRHEQPGEASQRERSEAEILRLYL HHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH HCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETNLGAGRLEAISRGTDSGHDLE HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC DIELPRLLTDQLLLENSALVARLTPLLEPGEVHLAAMAKPLLQLRGTAAALERQKSLKRC CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHLLEAWGGQRLETLERCIAALIQEERQQPTESVDMEKRIEAMFEELNSDALRFQELYYS HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHCHHHHHHHHHHHH ERKHIGHLDQQRCGGFSGQDVIPA HHHHCCCCCHHHCCCCCCCCCCCC >Mature Secondary Structure PVPRLHPRTIEAVKERADIVDVVGEHVVLKKKGREFVGICPFHDDSKPSMTVSPAKQFY CCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCEEECCHHHEE YCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKLH EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHH RALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQVE HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHC GLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEPKYLNSP CCHHHHHHHCCEEEEECCCCCHHHHHCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC ETDVFEKGKHLFGLDRAANAIRKDDRAVVVEGYFDVIALHAAGVTNSVASLGTALSSQQI CHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH TQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLHLPSGKDPDEFLK HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH DHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALLGKLPQSAVRTHY HCCCCHHHHHHCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH LQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHGRSSRHEQPGEASQRERSEAEILRLYL HHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH HCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETNLGAGRLEAISRGTDSGHDLE HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC DIELPRLLTDQLLLENSALVARLTPLLEPGEVHLAAMAKPLLQLRGTAAALERQKSLKRC CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHLLEAWGGQRLETLERCIAALIQEERQQPTESVDMEKRIEAMFEELNSDALRFQELYYS HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHCHHHHHHHHHHHH ERKHIGHLDQQRCGGFSGQDVIPA HHHHCCCCCHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA