| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862531
Identifier: 33862531
GI number: 33862531
Start: 297005
End: 298624
Strand: Reverse
Name: 33862531
Synonym: PMT0258
Alternate gene names: NA
Gene position: 298624-297005 (Counterclockwise)
Preceding gene: 33862532
Following gene: 33862529
Centisome position: 12.39
GC content: 42.1
Gene sequence:
>1620_bases ATGAAATCACTTAAGGCCCTTTCAAAACAAAAAGGCTTTGGCCTCAGACGCAATGGTTTTGGTTTGTCTGAGACCGTTGT TGCCGCAGGGGCCAGCATTCTTCTCATTGGAGCTTCTTCTCTAGCATTACGCTCTACCCAAACATTGGTTGACAGATCTG AAAGTAAAGCCAGCTTGCGCCAAAATACTACAAATGGTCTTAGGCTATTGAGATCAGAAGTCGAACGAAGTCTACATATC CTGGTCAATAATAGTGAAGCTATTTCAAATGAACAAACCCGCACAGACTTGGGTCATAAACAATACGCAGCCACTCTCAA ACAATGTGAGAGCTTGGCGGAAAATCAAACAAAAGCATTTAAACCAGTCTTTGGCATCAAAATGGCTGAGATCGATACAC CAGTCATTTATGGATTTAGCGTTAGTTCAAGTAATAACGGCTATGCCTTAATGAGATGTGGTGCTCCACTTGATCTTGAT GGACGTTATAATGATGCCAATGGAATCAGCTCGCTGTTTCTAGCTAAAGCAATTGAAGATATTGGTACCATGGGGTGCTA TAAACCTGAAGGAAATTGCAAGCACCCCACAACCCCTGAAGGGGATATAAAAGGCCTCAAAGAAATCGTAGAGGATCTTG ATGTTGATTTTGAAAAAGATCAAACACCAATACGAAGTTTCATGGAGCCAGCTTTGCGCATGGAGACTGATCCCACTCGT AAATTGGTCAAATTTATAGATCCAGATCCCAACAATGATCCTAAGAAATTTGAAGAGGATAGTTACCTGGAAACCAAAAG CGGGTCACGTACAATTGCAAAATACCCCCTTTTCCTTGCTGCCTTCGCTAGAGCCGATAAACGCCTTGAGAACTATGGAA GTGATAGCTTCTACAATGGAACCTATTTTCGTAATGTTCGAAGCAAACGAGTACGTTTCCTAGTCGATGGTTCAGGCTCA ATGAGCGCATGCATTCTTTGGGGTAGTAAAGATTATCCTAGTCAGGCTAGAATATATTGGGCTGAAGTTCTCAACTATAG AGGCAGAACATATAAAAATGTATGGTATAGGTCTAGCCAATATTGTGCATTAACCCGAATGGAATCGCTGCAAACGGAAC TCAAACGCCTGATTACATCACTGCCCGAAGACACTAAGATTAGTCTCCAATCCTTTAGTTCGGCAGGGAGTAATAATCAC AGAACATGGGAAAAATCAAGCAATGGCTTAGTCAAGATTGGACAGGATGGATTCCGCGAATCAGCAATTTCATTCGTGAA TTCAATGGATAATGGTGATCCCAGGTCTTGGGGGGGTACTTACCCATGGGAGGGTTTAGACAGCTCTTTTGATGACAATG AAACGGACACCCTATATTTCCTCACTGATGGAAAGCCCAACAAAAGGCGGGATGGGAGCAGCTGGCAAGACTATAATTAT GACTCTACAGTGAATCACTATCTAGATCATAATAAAAGAAGAAAGCAAACACTAAAGACGAACACCATTGCCATTGGCCT TGCATCACCATGGATGGAAGACTTATCAACTAAAACCAGCGGTAATTATCTACAGGTTGACAAACATACCGCTGCAAAGA CATTAAGTAATGGTCAATAG
Upstream 100 bases:
>100_bases ACAATACTCAGGGAATTTTCACTATAAATCGAGCAATTTAAGCAGCATCCCTGAGATAATTAAATCATTAGAGGCACGCT TTAACGATGACATCAGATCC
Downstream 100 bases:
>100_bases TAAAAGATAAATCAGCTCGTTTGATTCAGCTTCAATACAGCCATAAATGCTTCCTGAGGCACATCCACTTTGCCCATGGC CTTCATCCGCTTTTTACCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MKSLKALSKQKGFGLRRNGFGLSETVVAAGASILLIGASSLALRSTQTLVDRSESKASLRQNTTNGLRLLRSEVERSLHI LVNNSEAISNEQTRTDLGHKQYAATLKQCESLAENQTKAFKPVFGIKMAEIDTPVIYGFSVSSSNNGYALMRCGAPLDLD GRYNDANGISSLFLAKAIEDIGTMGCYKPEGNCKHPTTPEGDIKGLKEIVEDLDVDFEKDQTPIRSFMEPALRMETDPTR KLVKFIDPDPNNDPKKFEEDSYLETKSGSRTIAKYPLFLAAFARADKRLENYGSDSFYNGTYFRNVRSKRVRFLVDGSGS MSACILWGSKDYPSQARIYWAEVLNYRGRTYKNVWYRSSQYCALTRMESLQTELKRLITSLPEDTKISLQSFSSAGSNNH RTWEKSSNGLVKIGQDGFRESAISFVNSMDNGDPRSWGGTYPWEGLDSSFDDNETDTLYFLTDGKPNKRRDGSSWQDYNY DSTVNHYLDHNKRRKQTLKTNTIAIGLASPWMEDLSTKTSGNYLQVDKHTAAKTLSNGQ
Sequences:
>Translated_539_residues MKSLKALSKQKGFGLRRNGFGLSETVVAAGASILLIGASSLALRSTQTLVDRSESKASLRQNTTNGLRLLRSEVERSLHI LVNNSEAISNEQTRTDLGHKQYAATLKQCESLAENQTKAFKPVFGIKMAEIDTPVIYGFSVSSSNNGYALMRCGAPLDLD GRYNDANGISSLFLAKAIEDIGTMGCYKPEGNCKHPTTPEGDIKGLKEIVEDLDVDFEKDQTPIRSFMEPALRMETDPTR KLVKFIDPDPNNDPKKFEEDSYLETKSGSRTIAKYPLFLAAFARADKRLENYGSDSFYNGTYFRNVRSKRVRFLVDGSGS MSACILWGSKDYPSQARIYWAEVLNYRGRTYKNVWYRSSQYCALTRMESLQTELKRLITSLPEDTKISLQSFSSAGSNNH RTWEKSSNGLVKIGQDGFRESAISFVNSMDNGDPRSWGGTYPWEGLDSSFDDNETDTLYFLTDGKPNKRRDGSSWQDYNY DSTVNHYLDHNKRRKQTLKTNTIAIGLASPWMEDLSTKTSGNYLQVDKHTAAKTLSNGQ >Mature_539_residues MKSLKALSKQKGFGLRRNGFGLSETVVAAGASILLIGASSLALRSTQTLVDRSESKASLRQNTTNGLRLLRSEVERSLHI LVNNSEAISNEQTRTDLGHKQYAATLKQCESLAENQTKAFKPVFGIKMAEIDTPVIYGFSVSSSNNGYALMRCGAPLDLD GRYNDANGISSLFLAKAIEDIGTMGCYKPEGNCKHPTTPEGDIKGLKEIVEDLDVDFEKDQTPIRSFMEPALRMETDPTR KLVKFIDPDPNNDPKKFEEDSYLETKSGSRTIAKYPLFLAAFARADKRLENYGSDSFYNGTYFRNVRSKRVRFLVDGSGS MSACILWGSKDYPSQARIYWAEVLNYRGRTYKNVWYRSSQYCALTRMESLQTELKRLITSLPEDTKISLQSFSSAGSNNH RTWEKSSNGLVKIGQDGFRESAISFVNSMDNGDPRSWGGTYPWEGLDSSFDDNETDTLYFLTDGKPNKRRDGSSWQDYNY DSTVNHYLDHNKRRKQTLKTNTIAIGLASPWMEDLSTKTSGNYLQVDKHTAAKTLSNGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60394; Mature: 60394
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLKALSKQKGFGLRRNGFGLSETVVAAGASILLIGASSLALRSTQTLVDRSESKASLR CCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHH QNTTNGLRLLRSEVERSLHILVNNSEAISNEQTRTDLGHKQYAATLKQCESLAENQTKAF HCCHHHHHHHHHHHHCEEEEEEECCHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC KPVFGIKMAEIDTPVIYGFSVSSSNNGYALMRCGAPLDLDGRYNDANGISSLFLAKAIED CHHHCEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH IGTMGCYKPEGNCKHPTTPEGDIKGLKEIVEDLDVDFEKDQTPIRSFMEPALRMETDPTR HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHH KLVKFIDPDPNNDPKKFEEDSYLETKSGSRTIAKYPLFLAAFARADKRLENYGSDSFYNG HHHHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TYFRNVRSKRVRFLVDGSGSMSACILWGSKDYPSQARIYWAEVLNYRGRTYKNVWYRSSQ HHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCC YCALTRMESLQTELKRLITSLPEDTKISLQSFSSAGSNNHRTWEKSSNGLVKIGQDGFRE CHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHH SAISFVNSMDNGDPRSWGGTYPWEGLDSSFDDNETDTLYFLTDGKPNKRRDGSSWQDYNY HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC DSTVNHYLDHNKRRKQTLKTNTIAIGLASPWMEDLSTKTSGNYLQVDKHTAAKTLSNGQ CCHHHHHHCCCHHHHHHHCCCEEEEEECCHHHHHHCCCCCCCEEEECCHHHHHHCCCCC >Mature Secondary Structure MKSLKALSKQKGFGLRRNGFGLSETVVAAGASILLIGASSLALRSTQTLVDRSESKASLR CCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHH QNTTNGLRLLRSEVERSLHILVNNSEAISNEQTRTDLGHKQYAATLKQCESLAENQTKAF HCCHHHHHHHHHHHHCEEEEEEECCHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC KPVFGIKMAEIDTPVIYGFSVSSSNNGYALMRCGAPLDLDGRYNDANGISSLFLAKAIED CHHHCEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH IGTMGCYKPEGNCKHPTTPEGDIKGLKEIVEDLDVDFEKDQTPIRSFMEPALRMETDPTR HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHH KLVKFIDPDPNNDPKKFEEDSYLETKSGSRTIAKYPLFLAAFARADKRLENYGSDSFYNG HHHHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TYFRNVRSKRVRFLVDGSGSMSACILWGSKDYPSQARIYWAEVLNYRGRTYKNVWYRSSQ HHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCC YCALTRMESLQTELKRLITSLPEDTKISLQSFSSAGSNNHRTWEKSSNGLVKIGQDGFRE CHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHH SAISFVNSMDNGDPRSWGGTYPWEGLDSSFDDNETDTLYFLTDGKPNKRRDGSSWQDYNY HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC DSTVNHYLDHNKRRKQTLKTNTIAIGLASPWMEDLSTKTSGNYLQVDKHTAAKTLSNGQ CCHHHHHHCCCHHHHHHHCCCEEEEEECCHHHHHHCCCCCCCEEEECCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA