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The map label for this gene is csd [H]

Identifier: 33862506

GI number: 33862506

Start: 267637

End: 268839

Strand: Reverse

Name: csd [H]

Synonym: PMT0233

Alternate gene names: 33862506

Gene position: 268839-267637 (Counterclockwise)

Preceding gene: 33862511

Following gene: 33862505

Centisome position: 11.15

GC content: 54.36

Gene sequence:

>1203_bases
ATGCTTAGAGATCTCTGCCCAGCACTCGCTAACAAGACCTACTTCAACTACGGCGGCCAAGGCCCCCTGCCAACGCCATC
ACTAGAAGCAATCACCTGCAGCTGGAAACGTATTCAGGAACTAGGGCCGTTTACCAACGATGTGTGGCCCTATGTGGCCA
AAGAAATCCAGGCCACTCGTTCACAATTAGCCAAGCTCTGCGGCGTTACCCCCCATCGCATCGCCCTCACTGAAAATGTC
ACTACTGGCTGTGTCTTGCCGCTCTGGGGCCTGCCTTTCTCAGAAGGCGATCGCTTGCTCATTAGCGACTGTGAACATCC
AGGAGTTGTTGCTGCATGCATTGAACTGACCCGCCGACAACACCTAGCAATAGACACGCTGCCTGTAAAAAACTTGCGTC
ATGGTGCTAACGATCAAGCGACTAGCGACAGCCTTGTGCTGGAAAGACTTGAGCAACACCTCAAACCAAGCACAAGGCTG
GTGGTGCTCTCCCACCTGCTTTGGAATACAGGCCAATTGATGCCGATCTCAGCTGTTGCTAAAGCCCTCAGCCATCATCC
ACAACAGCCTTTCTTGCTCGTCGATGCGGCACAAAGCTTCGCCCAAGTTCCGGTACAGGAAGCCGCTGTCGCTTCAGATA
TCTATGCCTTTACGGGGCACAAATGGGCCTGCGGGCCTGAAGGTCTTGGTGGAGTCGCCCTCTCAGAACGGGTGCTAGTC
GAAGCGAATCCCACCCTGATTGGCTGGCGCAGCTTGCAGAACGAAGGCCATCTTCAAAACAACCAGGCCGAACTCTTCCA
TCACGACAGTCGCCGCTTTGAGGTAGCAACCTCCTGCGTGCCACTGATGGCAGGCCTGCGCTGTTCGTTGGAGCTGCTCG
AAACCGCAGGCTCGCAACAGGAACGACTGAGCCAGATTCGCCAAGGCAGCCAAAAACTATGGAATCAACTACAACAGCTC
ACAGGCGTTGAAACTCTGCTCAACAGTGCCCCAGCCGCTGGTCTTGTCAGCTTTGAGTTACCCCAAGGCCCCCCAGCTCC
TGATGTGGTTCAACAATTAGGCAACGATCAGCTCTGGATTCGGCATCTCGAAGATCCAATCTGCCTACGTGCCTGCGTGC
ACATCACCACTGAAGAGCAAGAACTCAACACACTCACAACCGCACTCAAGCAGCTAGCTTGCAAAGGAGAGCCAAGCAAT
TAA

Upstream 100 bases:

>100_bases
TGCCCGTTGCAGCACGTAGCTTTGACGAGCCTTAGTGATGTAGTTCGGGACCTTTCTGAACGGCACCTATACCAACAGCT
ATACCAACGCTATTCTAGTG

Downstream 100 bases:

>100_bases
CCGTTAGCTGAGTTATCTTATTTGCCAAAAGCAGATATATAATCGATCTCAAAAGTTCCATTATCGACAACAAAGCAAGT
CTACGAATCAAAAGCAAAGT

Product: L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLRDLCPALANKTYFNYGGQGPLPTPSLEAITCSWKRIQELGPFTNDVWPYVAKEIQATRSQLAKLCGVTPHRIALTENV
TTGCVLPLWGLPFSEGDRLLISDCEHPGVVAACIELTRRQHLAIDTLPVKNLRHGANDQATSDSLVLERLEQHLKPSTRL
VVLSHLLWNTGQLMPISAVAKALSHHPQQPFLLVDAAQSFAQVPVQEAAVASDIYAFTGHKWACGPEGLGGVALSERVLV
EANPTLIGWRSLQNEGHLQNNQAELFHHDSRRFEVATSCVPLMAGLRCSLELLETAGSQQERLSQIRQGSQKLWNQLQQL
TGVETLLNSAPAAGLVSFELPQGPPAPDVVQQLGNDQLWIRHLEDPICLRACVHITTEEQELNTLTTALKQLACKGEPSN

Sequences:

>Translated_400_residues
MLRDLCPALANKTYFNYGGQGPLPTPSLEAITCSWKRIQELGPFTNDVWPYVAKEIQATRSQLAKLCGVTPHRIALTENV
TTGCVLPLWGLPFSEGDRLLISDCEHPGVVAACIELTRRQHLAIDTLPVKNLRHGANDQATSDSLVLERLEQHLKPSTRL
VVLSHLLWNTGQLMPISAVAKALSHHPQQPFLLVDAAQSFAQVPVQEAAVASDIYAFTGHKWACGPEGLGGVALSERVLV
EANPTLIGWRSLQNEGHLQNNQAELFHHDSRRFEVATSCVPLMAGLRCSLELLETAGSQQERLSQIRQGSQKLWNQLQQL
TGVETLLNSAPAAGLVSFELPQGPPAPDVVQQLGNDQLWIRHLEDPICLRACVHITTEEQELNTLTTALKQLACKGEPSN
>Mature_400_residues
MLRDLCPALANKTYFNYGGQGPLPTPSLEAITCSWKRIQELGPFTNDVWPYVAKEIQATRSQLAKLCGVTPHRIALTENV
TTGCVLPLWGLPFSEGDRLLISDCEHPGVVAACIELTRRQHLAIDTLPVKNLRHGANDQATSDSLVLERLEQHLKPSTRL
VVLSHLLWNTGQLMPISAVAKALSHHPQQPFLLVDAAQSFAQVPVQEAAVASDIYAFTGHKWACGPEGLGGVALSERVLV
EANPTLIGWRSLQNEGHLQNNQAELFHHDSRRFEVATSCVPLMAGLRCSLELLETAGSQQERLSQIRQGSQKLWNQLQQL
TGVETLLNSAPAAGLVSFELPQGPPAPDVVQQLGNDQLWIRHLEDPICLRACVHITTEEQELNTLTTALKQLACKGEPSN

Specific function: Fe-S cluster biosynthesis [C]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994898, Length=302, Percent_Identity=25.1655629139073, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 43847; Mature: 43847

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDLCPALANKTYFNYGGQGPLPTPSLEAITCSWKRIQELGPFTNDVWPYVAKEIQATR
CCHHHHHHHHCCCEECCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SQLAKLCGVTPHRIALTENVTTGCVLPLWGLPFSEGDRLLISDCEHPGVVAACIELTRRQ
HHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
HLAIDTLPVKNLRHGANDQATSDSLVLERLEQHLKPSTRLVVLSHLLWNTGQLMPISAVA
HCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
KALSHHPQQPFLLVDAAQSFAQVPVQEAAVASDIYAFTGHKWACGPEGLGGVALSERVLV
HHHHCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEE
EANPTLIGWRSLQNEGHLQNNQAELFHHDSRRFEVATSCVPLMAGLRCSLELLETAGSQQ
ECCCCEEEHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ERLSQIRQGSQKLWNQLQQLTGVETLLNSAPAAGLVSFELPQGPPAPDVVQQLGNDQLWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEE
RHLEDPICLRACVHITTEEQELNTLTTALKQLACKGEPSN
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRDLCPALANKTYFNYGGQGPLPTPSLEAITCSWKRIQELGPFTNDVWPYVAKEIQATR
CCHHHHHHHHCCCEECCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SQLAKLCGVTPHRIALTENVTTGCVLPLWGLPFSEGDRLLISDCEHPGVVAACIELTRRQ
HHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
HLAIDTLPVKNLRHGANDQATSDSLVLERLEQHLKPSTRLVVLSHLLWNTGQLMPISAVA
HCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
KALSHHPQQPFLLVDAAQSFAQVPVQEAAVASDIYAFTGHKWACGPEGLGGVALSERVLV
HHHHCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEE
EANPTLIGWRSLQNEGHLQNNQAELFHHDSRRFEVATSCVPLMAGLRCSLELLETAGSQQ
ECCCCEEEHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ERLSQIRQGSQKLWNQLQQLTGVETLLNSAPAAGLVSFELPQGPPAPDVVQQLGNDQLWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEE
RHLEDPICLRACVHITTEEQELNTLTTALKQLACKGEPSN
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]