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The map label for this gene is psd

Identifier: 32267337

GI number: 32267337

Start: 1759912

End: 1760697

Strand: Direct

Name: psd

Synonym: HH1838

Alternate gene names: 32267337

Gene position: 1759912-1760697 (Clockwise)

Preceding gene: 32267336

Following gene: 32267338

Centisome position: 97.82

GC content: 37.79

Gene sequence:

>786_bases
ATGAATCTTTCTAATAAAATCTCACGGCTCTTTGGACATTTCGCATCTTATGAGTTTCCCTCTCCATTACAGAATCTTAT
TAATGCCGTGTATGTGAAAATCTTTCACATTGAGCTTGGTGAATTTGCTCCTGCTTCTAGCTATGCTTCGCTCAATGCAC
TTTTTACACGAGCACTTACAAGTGAGCGCACGATTAATCCTAATCCTATTGTGCTTGTTGCGCCTTGTGATTCTCTGATA
ACTCAAATGGGCAAAAGCACGCAAAAAAATGCTCTCCAAATCAAAGGTATGGAATATTCTGTTGAAGAGCTTTTAGGACA
AAAGCTTGATAGGGAGTTCTATTATATAAATTTTTATCTCTCACCAAAAGACTATCATCGTTATCACGCACCTTGTGATA
TGGAGATTTATGAGGTGCGATATTTTGGCGGGGAGCTGCTTCCTGTGAATCTACCATCTTTACAAAAAAATCAAAGTCTT
TTTGCCCGAAATGAACGCGTAGTAGTAGTAGGCAAAACATCAACAAACAAATGGCTGTATTTTGTCGCCATAGGCGCACT
TAATGTGGGAAGTATAGTAATGCATTTTGAGGGCAGAGTTGAGAGTAATGCCAAATCACACGATATTTGCTATACTTACC
GCACACCTATTACAATAAAAAAGGGTGAGGAATTGGGAATGTTTAAAATGGGTTCAACTATTGTGCTTTTTATGGAGCAG
ATGATTCCAGATGTGCATATTAATGAAAAAGTTAAATTTGCTCAAGACATAGGCACTCATACATAA

Upstream 100 bases:

>100_bases
GCATAAAAGCTTTTCTTGCTTTATGTGATACTCCATTTTTCTATGCCCTTGCTATACGCGGACATAAGCAACCTAAAACA
ACTCAAAAACGAGGTGAAGT

Downstream 100 bases:

>100_bases
AATTATATAAATTTAAGGAATAGTTATGTCAGCCACACTCACCAATGAAATTAAAGATTTACTCCATAAACTCAATGGGC
TTTTGGTAGCACATTATTAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MNLSNKISRLFGHFASYEFPSPLQNLINAVYVKIFHIELGEFAPASSYASLNALFTRALTSERTINPNPIVLVAPCDSLI
TQMGKSTQKNALQIKGMEYSVEELLGQKLDREFYYINFYLSPKDYHRYHAPCDMEIYEVRYFGGELLPVNLPSLQKNQSL
FARNERVVVVGKTSTNKWLYFVAIGALNVGSIVMHFEGRVESNAKSHDICYTYRTPITIKKGEELGMFKMGSTIVLFMEQ
MIPDVHINEKVKFAQDIGTHT

Sequences:

>Translated_261_residues
MNLSNKISRLFGHFASYEFPSPLQNLINAVYVKIFHIELGEFAPASSYASLNALFTRALTSERTINPNPIVLVAPCDSLI
TQMGKSTQKNALQIKGMEYSVEELLGQKLDREFYYINFYLSPKDYHRYHAPCDMEIYEVRYFGGELLPVNLPSLQKNQSL
FARNERVVVVGKTSTNKWLYFVAIGALNVGSIVMHFEGRVESNAKSHDICYTYRTPITIKKGEELGMFKMGSTIVLFMEQ
MIPDVHINEKVKFAQDIGTHT
>Mature_261_residues
MNLSNKISRLFGHFASYEFPSPLQNLINAVYVKIFHIELGEFAPASSYASLNALFTRALTSERTINPNPIVLVAPCDSLI
TQMGKSTQKNALQIKGMEYSVEELLGQKLDREFYYINFYLSPKDYHRYHAPCDMEIYEVRYFGGELLPVNLPSLQKNQSL
FARNERVVVVGKTSTNKWLYFVAIGALNVGSIVMHFEGRVESNAKSHDICYTYRTPITIKKGEELGMFKMGSTIVLFMEQ
MIPDVHINEKVKFAQDIGTHT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=291, Percent_Identity=27.8350515463918, Blast_Score=123, Evalue=1e-28,
Organism=Escherichia coli, GI1790604, Length=242, Percent_Identity=34.7107438016529, Blast_Score=127, Evalue=8e-31,
Organism=Caenorhabditis elegans, GI71980843, Length=247, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71980840, Length=247, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=170, Percent_Identity=35.8823529411765, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321609, Length=216, Percent_Identity=27.3148148148148, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649526, Length=295, Percent_Identity=28.8135593220339, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24649528, Length=295, Percent_Identity=28.8135593220339, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24649524, Length=295, Percent_Identity=28.8135593220339, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29712; Mature: 29712

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSNKISRLFGHFASYEFPSPLQNLINAVYVKIFHIELGEFAPASSYASLNALFTRALT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
SERTINPNPIVLVAPCDSLITQMGKSTQKNALQIKGMEYSVEELLGQKLDREFYYINFYL
CCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEE
SPKDYHRYHAPCDMEIYEVRYFGGELLPVNLPSLQKNQSLFARNERVVVVGKTSTNKWLY
CCCHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCEEE
FVAIGALNVGSIVMHFEGRVESNAKSHDICYTYRTPITIKKGEELGMFKMGSTIVLFMEQ
EEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEECCEEEECCCCCCEEECCCHHHHHHHH
MIPDVHINEKVKFAQDIGTHT
HCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MNLSNKISRLFGHFASYEFPSPLQNLINAVYVKIFHIELGEFAPASSYASLNALFTRALT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
SERTINPNPIVLVAPCDSLITQMGKSTQKNALQIKGMEYSVEELLGQKLDREFYYINFYL
CCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEEEE
SPKDYHRYHAPCDMEIYEVRYFGGELLPVNLPSLQKNQSLFARNERVVVVGKTSTNKWLY
CCCHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCEEE
FVAIGALNVGSIVMHFEGRVESNAKSHDICYTYRTPITIKKGEELGMFKMGSTIVLFMEQ
EEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEECCEEEECCCCCCEEECCCHHHHHHHH
MIPDVHINEKVKFAQDIGTHT
HCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA