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The map label for this gene is yggS [C]

Identifier: 32267181

GI number: 32267181

Start: 1608987

End: 1609655

Strand: Direct

Name: yggS [C]

Synonym: HH1682

Alternate gene names: 32267181

Gene position: 1608987-1609655 (Clockwise)

Preceding gene: 32267180

Following gene: 32267182

Centisome position: 89.43

GC content: 40.06

Gene sequence:

>669_bases
ATGTTAGCTTTAAATCTTGAACGCATTTTGCGTAGAATCGAAAGGGCTAGACTCGCTTATAGTCCTCATCAAATCATCTC
ACTTGTTGCCGTAAGCAAGTATCAAAGCACGGAGCAAATACGCGCTCTTTATGAATGCGGACAAAGGGCGTTTGGTGAGA
ATAAAGTGCAGGATTTACGCGCAAAAATTGAATCTTTAGATGATTTGCCTTTGGAGTGGCATTTTATTGGGAATTTGCAG
GAAAATAAAATTAATACGCTTCTTTCTTTGAATCCTACACTTTTGCATAGCCTAGATTCTATAAAACTCGCCCTTGCTTT
GCAAAAGCGATTAGGAGAGCAGAAGATTCGCGCACTGCTTCAAGTGAATGCTGCAAATGAAGAGAGTAAAAGCGGTGTGA
GCGTAGAATCTGCTAAAGAAATATATGAGCACATTTGTGCTACTTGCCCAAATATCAAGCTTGAGGGCATAATGAGTATT
GGCGCACATAGCGATGATAGAGCACTTATAGAACGTAGTTTTAGATTAACTCGTGATGTGTTTGATTCTCTTAAAGGAAG
TGGTGCGAAGATTCTTTCTATGGGTATGAGCGGGGATTTTGAAATAGCGATTGCTTATGGGGCAAATCTTGTGCGGATTG
GTTCAAAACTATTTGAGGAGGCAAAATGA

Upstream 100 bases:

>100_bases
TGCGTATTATCTTACATTGTGTGGTTGGGCAATACTTTTGGCTTTAATGTTTTTAGGATTGTATAATGATATTTTCCGTT
TATTGTCATAAGGAAAGAAT

Downstream 100 bases:

>100_bases
GGGTTTTATTATTTATAAGTTTGTGTGTATGTGGTGTTTTCGCACAGAATCATCAACTTACACAAATTATGCAGGATATG
GAATGGGCAATGGACAGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLALNLERILRRIERARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLRAKIESLDDLPLEWHFIGNLQ
ENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQKIRALLQVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSI
GAHSDDRALIERSFRLTRDVFDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEEAK

Sequences:

>Translated_222_residues
MLALNLERILRRIERARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLRAKIESLDDLPLEWHFIGNLQ
ENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQKIRALLQVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSI
GAHSDDRALIERSFRLTRDVFDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEEAK
>Mature_222_residues
MLALNLERILRRIERARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLRAKIESLDDLPLEWHFIGNLQ
ENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQKIRALLQVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSI
GAHSDDRALIERSFRLTRDVFDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEEAK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=208, Percent_Identity=36.5384615384615, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=36.6812227074236, Blast_Score=112, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=230, Percent_Identity=36.0869565217391, Blast_Score=117, Evalue=6e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=37.6146788990826, Blast_Score=101, Evalue=8e-23,
Organism=Drosophila melanogaster, GI45550861, Length=234, Percent_Identity=35.4700854700855, Blast_Score=127, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24778; Mature: 24778

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALNLERILRRIERARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLR
CCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AKIESLDDLPLEWHFIGNLQENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQKIRALL
HHHHHCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSIGAHSDDRALIERSFRLTRDV
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHH
FDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEEAK
HHHHCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLALNLERILRRIERARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLR
CCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AKIESLDDLPLEWHFIGNLQENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQKIRALL
HHHHHCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSIGAHSDDRALIERSFRLTRDV
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHH
FDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEEAK
HHHHCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]