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The map label for this gene is secF

Identifier: 32267147

GI number: 32267147

Start: 1575959

End: 1576930

Strand: Direct

Name: secF

Synonym: HH1648

Alternate gene names: 32267147

Gene position: 1575959-1576930 (Clockwise)

Preceding gene: 32267146

Following gene: 32267148

Centisome position: 87.59

GC content: 35.91

Gene sequence:

>972_bases
ATGGAAGTTTTTAAGAAAGTAAAAATATATGATTTTGTTACATATAGCTCGTATGGACTTGTTATCTCTACATTATTAAT
TATTGCTTCATTTGTGCTCTTAGGCATAAAAGGTTTTAATTTGGGTATTGATTTTGCGGGTGGAAGTATAGTGCAGATTC
AATATACTAAACCTGCCCCGCTTAGTAAAATCCGCGAACTTCTCGCACAAGATGAGAGATTTAAAAATTCACAAGTAAGC
GAGTTTGGCTCTAAAGAGGAAGTATTGCTTAAGATTCCTTATATCCCTACGAGTGTCAATGAGGATATATCTCATAGTAT
TGTTGCTCTTTTAGAGCCAAGTGGGCATTTTGAGTTGCGCAGGGTGGATTCCGTAGGTCCAAAGGTGGGTGATGAACTCA
AGCAAAATGGTATTATTGCCCTCACATTCGCACTTATAGCAATGATGATTTATATTTCATTTCGTTATGAATGGAGATTC
TCTCTTGCAGGTGTGCTTGCACTCGTGCATGATGTCATTATTGTTTCTGGCGTGGTGATACTTGCAGGTGTAGATTTCAA
TCTTGATGTCTTGGCGGCGTTGCTTACAATTATTGGTTATTCAATCAATGATACCATTATTATTTTTGATAGAATCCGCG
AACAAATGATGATAAAGCGTCAAAAAGATATGAAATATGTTATTAATGAAGCAGTTTCTTGCACACTTTCAAGGACTATC
CTTACTTCTTTAACTGTGTTTTTTGTGGTGCTAACACTTTATCTTTTTGGCGGAGAAATTATTGTTGGATTCTCACTTCC
TATGCTTGTAGGGGTGATTATTGCTACTTGTAGTTCAATGTTTGTTGCACCGCGTTTAGCATTAATGTTTGGGTTTAATC
TTGATGAGTATTATCAAAGAGAGACAAATAAACTCAAAAAACAAGAGGAAAAAAAGAGACTGCGTGCAATGTATGAACAA
GGTCGTTTATAA

Upstream 100 bases:

>100_bases
TAAAAGTGGCAATGTAAATTTGTGGTTTGGTATCAAGCTACCTTTAGATACCACAGAATCGGCAAAGCAGCAAGATACAA
AGCTTAACAAAGGGTAATAT

Downstream 100 bases:

>100_bases
GGAGTGAGTAATGGATTGGGGTAAGGTATTCTTTGTATTTTTTAGTTTGATGAGCTTAACTTTTACGCTTGGATTTTTGT
ATGAAAGTAATATAGTGATA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MEVFKKVKIYDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAPLSKIRELLAQDERFKNSQVS
EFGSKEEVLLKIPYIPTSVNEDISHSIVALLEPSGHFELRRVDSVGPKVGDELKQNGIIALTFALIAMMIYISFRYEWRF
SLAGVLALVHDVIIVSGVVILAGVDFNLDVLAALLTIIGYSINDTIIIFDRIREQMMIKRQKDMKYVINEAVSCTLSRTI
LTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFGFNLDEYYQRETNKLKKQEEKKRLRAMYEQ
GRL

Sequences:

>Translated_323_residues
MEVFKKVKIYDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAPLSKIRELLAQDERFKNSQVS
EFGSKEEVLLKIPYIPTSVNEDISHSIVALLEPSGHFELRRVDSVGPKVGDELKQNGIIALTFALIAMMIYISFRYEWRF
SLAGVLALVHDVIIVSGVVILAGVDFNLDVLAALLTIIGYSINDTIIIFDRIREQMMIKRQKDMKYVINEAVSCTLSRTI
LTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFGFNLDEYYQRETNKLKKQEEKKRLRAMYEQ
GRL
>Mature_323_residues
MEVFKKVKIYDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAPLSKIRELLAQDERFKNSQVS
EFGSKEEVLLKIPYIPTSVNEDISHSIVALLEPSGHFELRRVDSVGPKVGDELKQNGIIALTFALIAMMIYISFRYEWRF
SLAGVLALVHDVIIVSGVVILAGVDFNLDVLAALLTIIGYSINDTIIIFDRIREQMMIKRQKDMKYVINEAVSCTLSRTI
LTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFGFNLDEYYQRETNKLKKQEEKKRLRAMYEQ
GRL

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=300, Percent_Identity=38.3333333333333, Blast_Score=230, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36343; Mature: 36343

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVFKKVKIYDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAP
CCHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCC
LSKIRELLAQDERFKNSQVSEFGSKEEVLLKIPYIPTSVNEDISHSIVALLEPSGHFELR
HHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHEEECCCCCEEEE
RVDSVGPKVGDELKQNGIIALTFALIAMMIYISFRYEWRFSLAGVLALVHDVIIVSGVVI
EHHHCCCCCCHHHHHCCEEHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHH
LAGVDFNLDVLAALLTIIGYSINDTIIIFDRIREQMMIKRQKDMKYVINEAVSCTLSRTI
EECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFGFNLDEYYQR
HHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ETNKLKKQEEKKRLRAMYEQGRL
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVFKKVKIYDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAP
CCHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCC
LSKIRELLAQDERFKNSQVSEFGSKEEVLLKIPYIPTSVNEDISHSIVALLEPSGHFELR
HHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHEEECCCCCEEEE
RVDSVGPKVGDELKQNGIIALTFALIAMMIYISFRYEWRFSLAGVLALVHDVIIVSGVVI
EHHHCCCCCCHHHHHCCEEHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHH
LAGVDFNLDVLAALLTIIGYSINDTIIIFDRIREQMMIKRQKDMKYVINEAVSCTLSRTI
EECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFGFNLDEYYQR
HHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ETNKLKKQEEKKRLRAMYEQGRL
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]