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The map label for this gene is secD

Identifier: 32267146

GI number: 32267146

Start: 1574117

End: 1575955

Strand: Direct

Name: secD

Synonym: HH1647

Alternate gene names: 32267146

Gene position: 1574117-1575955 (Clockwise)

Preceding gene: 32267145

Following gene: 32267147

Centisome position: 87.49

GC content: 38.01

Gene sequence:

>1839_bases
ATGGCAAAACAACACACTTATTCCGTTCAAGGAAGCCATAAAGGTTTAAATTATAGGCTGTGGTCTTTTATTTTCGTAGC
ATTAGTTGGTATTATTCTTTGCTTACCTTCATTTACAGATATCAATGGTCGTAAGATTGCACTTGGACTTGATTTACAAG
GAGGATTAAATCTTCTTTTGGGTATAAAAACTCAAGAAGCAATTAAAGCGCGTTTTTCTTCCTTAGCTTCCCAGATTGTT
TTTGATACCAAAAAAGAGAATATTCTTATTGATAATTTAAAAGTATTTGAAGATAAGATAAGTTTTGAGCTTGTAGATAC
TGATGAAAAGCCAATGTTAGATAAGATTCTCTCTCAGATTAATGGGTTGCAAGTAAATGAAAATAATGGAGCGTATTCCA
TTGTTTTTACTGCAGAATATGAAGAAGAGATTCAAAGTAGTGCGCTCAAACAAGCTATCGGCACAATTCGCAATCGCCTT
GATGAATTTGGTTTAAGGGAGCCAAGTGTAACCCAGCAAGGTAAAGATAATATTCTTGTCCAGTTGCCAGGCATTAAAAC
AATTGAAGAAGAACAAAGGGCACGAGATTTGATAGCTAAGCCTGCACATTTGCAAATGATGGCTGTTGATGAAGAAAGAA
ATGCGCGAGTAAGCACAATGAGCGAGCTTGAGGCACAAAAATATAATGATGTTATTTTGCCTTTTGTGCATTCATCTGAG
GTTCAAGCTCTTCAGAATACTCTTGCTCATCTTCAAGAAAAACTTAATGAGTTAAAAGAACACCCACAAAATTCTATGTC
CTCGCAAGAAAGAACTAATACTTTATTTGCAGAACGCATTAAAATTGAGGGAGAAATTGCTAAGATTCAACAAGAGCTTG
AGGCGAAAAAAACAAAACTAAATCAGGTCATATTACTTAAAGCTGTCCCAATTCTTGATGGTTCTATGCTTACAGATGCA
AGAGCAGCTTTTGACCAAAACAATCAGCCCATTGTGAGTTTTAGCCTAGATTCTAAAGGAGCAAAGATTTTTGGAGACTT
CTCTGGGGCAAATGTAGGTAAACGTATGGCAATAGTTCTTGATGGTAAAGTATATTCTGCACCTGTCATTCGTGAGCGTA
TAGGTGGAGGAAGCGGACAAATCAGCGGTGGCTTTAGCGTAGCTGAAGCAAGTGATTTGGCAATTGCACTTAAAAGCGGA
GCATTACCAGCACCTATGGAAGTGCTTGAAAAGCGTAGTGTGGGTCCAAGCTTAGGTGAAGATTCTATACGAGCTTCATT
AATTGCGCTTATTAGTGGTTTTGCCTTAGTCGTTATTTTTATGATAATATATTACTCTCTTGCGGGCGTGATTGCTGTTG
TCGCATTGTTTGTGAATATTGTGCTTATTATTGCCGTTATGGCGTGCTTTGGTGCTTCATTAACATTGCCGGGTATGGCT
GGAATCGTGCTCACTGTGGGTATGGCAGTAGATGCAAATATTATTATTAATGAAAGAATCCGAGAAGCTTTGCGTGCAGG
ATTTGGTATAGCTAAATCAATTGAAATGGGCTATGCGAATGCCTCAAGGGCAATTTTTGATTCTAATCTCACAACACTTA
TCGCCGCTGTTTTACTCTATGCTTTTGGGACAGGAGCTATTAAAGGCTTTGCTATTACGATGGGGATTGGGATTACAGCT
TCTATTCTTACTGCTATTGTTGGCACACACGGCATTTATCAAGCAATTATGCAGCGGATTATTAAAAGTGGCAATGTAAA
TTTGTGGTTTGGTATCAAGCTACCTTTAGATACCACAGAATCGGCAAAGCAGCAAGATACAAAGCTTAACAAAGGGTAA

Upstream 100 bases:

>100_bases
TTTTAGCGTGCGTTTAAATGATGACACAATTGTAAAGCTTTCTCGGGAATTTATTGCATATAAGCTTGATGCAAATGATG
AAACTCAAGAATAATTACAA

Downstream 100 bases:

>100_bases
TATATGGAAGTTTTTAAGAAAGTAAAAATATATGATTTTGTTACATATAGCTCGTATGGACTTGTTATCTCTACATTATT
AATTATTGCTTCATTTGTGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 611

Protein sequence:

>612_residues
MAKQHTYSVQGSHKGLNYRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNLLLGIKTQEAIKARFSSLASQIV
FDTKKENILIDNLKVFEDKISFELVDTDEKPMLDKILSQINGLQVNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRL
DEFGLREPSVTQQGKDNILVQLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNARVSTMSELEAQKYNDVILPFVHSSE
VQALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQQELEAKKTKLNQVILLKAVPILDGSMLTDA
RAAFDQNNQPIVSFSLDSKGAKIFGDFSGANVGKRMAIVLDGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSG
ALPAPMEVLEKRSVGPSLGEDSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMACFGASLTLPGMA
GIVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSNLTTLIAAVLLYAFGTGAIKGFAITMGIGITA
SILTAIVGTHGIYQAIMQRIIKSGNVNLWFGIKLPLDTTESAKQQDTKLNKG

Sequences:

>Translated_612_residues
MAKQHTYSVQGSHKGLNYRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNLLLGIKTQEAIKARFSSLASQIV
FDTKKENILIDNLKVFEDKISFELVDTDEKPMLDKILSQINGLQVNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRL
DEFGLREPSVTQQGKDNILVQLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNARVSTMSELEAQKYNDVILPFVHSSE
VQALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQQELEAKKTKLNQVILLKAVPILDGSMLTDA
RAAFDQNNQPIVSFSLDSKGAKIFGDFSGANVGKRMAIVLDGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSG
ALPAPMEVLEKRSVGPSLGEDSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMACFGASLTLPGMA
GIVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSNLTTLIAAVLLYAFGTGAIKGFAITMGIGITA
SILTAIVGTHGIYQAIMQRIIKSGNVNLWFGIKLPLDTTESAKQQDTKLNKG
>Mature_611_residues
AKQHTYSVQGSHKGLNYRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNLLLGIKTQEAIKARFSSLASQIVF
DTKKENILIDNLKVFEDKISFELVDTDEKPMLDKILSQINGLQVNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRLD
EFGLREPSVTQQGKDNILVQLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNARVSTMSELEAQKYNDVILPFVHSSEV
QALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQQELEAKKTKLNQVILLKAVPILDGSMLTDAR
AAFDQNNQPIVSFSLDSKGAKIFGDFSGANVGKRMAIVLDGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSGA
LPAPMEVLEKRSVGPSLGEDSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMACFGASLTLPGMAG
IVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSNLTTLIAAVLLYAFGTGAIKGFAITMGIGITAS
ILTAIVGTHGIYQAIMQRIIKSGNVNLWFGIKLPLDTTESAKQQDTKLNKG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=326, Percent_Identity=41.1042944785276, Blast_Score=232, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66313; Mature: 66182

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQHTYSVQGSHKGLNYRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNLLL
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEE
GIKTQEAIKARFSSLASQIVFDTKKENILIDNLKVFEDKISFELVDTDEKPMLDKILSQI
ECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCEEEECCCCCHHHHHHHHHH
NGLQVNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRLDEFGLREPSVTQQGKDNILV
CCEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
QLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNARVSTMSELEAQKYNDVILPFVHSSE
EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHH
VQALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQQELEAKKTKL
HHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NQVILLKAVPILDGSMLTDARAAFDQNNQPIVSFSLDSKGAKIFGDFSGANVGKRMAIVL
CEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEE
DGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSGALPAPMEVLEKRSVGPSLGE
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCH
DSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMACFGASLTLPGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GIVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSNLTTLIAAVLLY
HHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHCCCHHHHHHHHHHH
AFGTGAIKGFAITMGIGITASILTAIVGTHGIYQAIMQRIIKSGNVNLWFGIKLPLDTTE
HHCCCCHHHEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
SAKQQDTKLNKG
HHHHHHCCCCCC
>Mature Secondary Structure 
AKQHTYSVQGSHKGLNYRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNLLL
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEE
GIKTQEAIKARFSSLASQIVFDTKKENILIDNLKVFEDKISFELVDTDEKPMLDKILSQI
ECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCCEEEECCCCCHHHHHHHHHH
NGLQVNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRLDEFGLREPSVTQQGKDNILV
CCEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
QLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNARVSTMSELEAQKYNDVILPFVHSSE
EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHH
VQALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQQELEAKKTKL
HHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NQVILLKAVPILDGSMLTDARAAFDQNNQPIVSFSLDSKGAKIFGDFSGANVGKRMAIVL
CEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEE
DGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSGALPAPMEVLEKRSVGPSLGE
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCH
DSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMACFGASLTLPGMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GIVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSNLTTLIAAVLLY
HHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHCCCHHHHHHHHHHH
AFGTGAIKGFAITMGIGITASILTAIVGTHGIYQAIMQRIIKSGNVNLWFGIKLPLDTTE
HHCCCCHHHEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
SAKQQDTKLNKG
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]