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The map label for this gene is rplY

Identifier: 32266993

GI number: 32266993

Start: 1432130

End: 1432666

Strand: Direct

Name: rplY

Synonym: HH1494

Alternate gene names: 32266993

Gene position: 1432130-1432666 (Clockwise)

Preceding gene: 32266992

Following gene: 32266994

Centisome position: 79.6

GC content: 34.08

Gene sequence:

>537_bases
ATGTTAGAAGGACAAATTAGAGAGAGTATTTCAAAATCTCAAGCAAAGGCTTTGAGGAATGATGGTTATCTAATTGCAAA
TATTTATGGCAAGGGACAGCAAAATATTCATTGTGCCTTTAAGCTTAATGATTTTATTAAAGCAATGAAGCAAAAGACTA
CCTTGATTTTTCCCGTGCAAGTAGGGGGCAAGACTTTGGAAGTGGTGATACAAGAATATCAAAAAGACCCTGTAACAAAC
ACTCTTATCCACGTGGATTTGCTTTTAGCACAAAAAGGTATTTTAAATAAATATAAAGTTCCTGTAATTGTCAAAGGAAA
TGCAAAAGGGCTTAAGAATAAAGGTGTGCTTTTTATTTCTACAAAACGTATTAGTGTTAAATGTGCTGCTGAAAATCTCC
CCAATGCTTATGAGATTGATGTAAGTGATTTAGATGTGGGAGATTCTATCCTTATTCGCGATTTGCCACAATTTGATAAT
GTAAATGTGTTGAATCGTCCATCTGTGGCAGTAGTTGGGGTAATTAAAGCTAAATAA

Upstream 100 bases:

>100_bases
AATCACACGACCACGACAAGTGTATATAGGTGAGTAACTCAAGTGTATTTAAGGGTTTTTAGCTATAATGCAACCCTTAA
TTTTCACATAAGGACATACA

Downstream 100 bases:

>100_bases
TGCCTTGCCTCCTTGTCGCAGGACTTGGTAATCCGAGTGCCAAATATCAAAATACTCGGCACAATATTGGGTTTATGGTG
CTTGATTTTTTATCAAAAGA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLEGQIRESISKSQAKALRNDGYLIANIYGKGQQNIHCAFKLNDFIKAMKQKTTLIFPVQVGGKTLEVVIQEYQKDPVTN
TLIHVDLLLAQKGILNKYKVPVIVKGNAKGLKNKGVLFISTKRISVKCAAENLPNAYEIDVSDLDVGDSILIRDLPQFDN
VNVLNRPSVAVVGVIKAK

Sequences:

>Translated_178_residues
MLEGQIRESISKSQAKALRNDGYLIANIYGKGQQNIHCAFKLNDFIKAMKQKTTLIFPVQVGGKTLEVVIQEYQKDPVTN
TLIHVDLLLAQKGILNKYKVPVIVKGNAKGLKNKGVLFISTKRISVKCAAENLPNAYEIDVSDLDVGDSILIRDLPQFDN
VNVLNRPSVAVVGVIKAK
>Mature_178_residues
MLEGQIRESISKSQAKALRNDGYLIANIYGKGQQNIHCAFKLNDFIKAMKQKTTLIFPVQVGGKTLEVVIQEYQKDPVTN
TLIHVDLLLAQKGILNKYKVPVIVKGNAKGLKNKGVLFISTKRISVKCAAENLPNAYEIDVSDLDVGDSILIRDLPQFDN
VNVLNRPSVAVVGVIKAK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_HELHP (Q7VG30)

Other databases:

- EMBL:   AE017125
- RefSeq:   NP_861025.1
- ProteinModelPortal:   Q7VG30
- SMR:   Q7VG30
- GeneID:   1492041
- GenomeReviews:   AE017125_GR
- KEGG:   hhe:HH1494
- NMPDR:   fig|235279.1.peg.1494
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   HHEP235279:HH_1494-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 19615; Mature: 19615

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGQIRESISKSQAKALRNDGYLIANIYGKGQQNIHCAFKLNDFIKAMKQKTTLIFPVQ
CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEHHHHHHHHCCCEEEEEEE
VGGKTLEVVIQEYQKDPVTNTLIHVDLLLAQKGILNKYKVPVIVKGNAKGLKNKGVLFIS
ECCCHHHHHHHHHCCCCCCHHHEEEEHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEE
TKRISVKCAAENLPNAYEIDVSDLDVGDSILIRDLPQFDNVNVLNRPSVAVVGVIKAK
ECEEEEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEECCCCEEEEEEEECC
>Mature Secondary Structure
MLEGQIRESISKSQAKALRNDGYLIANIYGKGQQNIHCAFKLNDFIKAMKQKTTLIFPVQ
CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEHHHHHHHHCCCEEEEEEE
VGGKTLEVVIQEYQKDPVTNTLIHVDLLLAQKGILNKYKVPVIVKGNAKGLKNKGVLFIS
ECCCHHHHHHHHHCCCCCCHHHEEEEHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEE
TKRISVKCAAENLPNAYEIDVSDLDVGDSILIRDLPQFDNVNVLNRPSVAVVGVIKAK
ECEEEEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954