| Definition | Helicobacter hepaticus ATCC 51449 chromosome, complete genome. |
|---|---|
| Accession | NC_004917 |
| Length | 1,799,146 |
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The map label for this gene is hsdR [H]
Identifier: 32266917
GI number: 32266917
Start: 1357286
End: 1360006
Strand: Direct
Name: hsdR [H]
Synonym: HH1418
Alternate gene names: 32266917
Gene position: 1357286-1360006 (Clockwise)
Preceding gene: 32266914
Following gene: 32266918
Centisome position: 75.44
GC content: 41.68
Gene sequence:
>2721_bases TTGGATAAACCAGAGCAAAAAGCAAGAGAAGAGATTGATAAGCTTTTATCACTAGCGGGATTTGAGTTAAGAGATTTTAA GGATTACGCTTTAGGGGATTCCACTCCCAATGCAGCACGCAATCTCGCCATAAAAGAATTTATCCTAAAAAATGGCACAA GGGCGGATTATATACTATTTGTCGCGGGTAAGGCGTGTGGAGTGATAGAGGCGAAAAAAATTTCTTTGTCTCTAAGTGGG GCGGAAAATCAAGCCAAAAATTATGCTTATACTCTTCCCGCGCATATTCCCTCTTTTCAAGGTATGTTGCCCTTTGTTTA TGTCAGCAATGCGAGTGAAATTTATTTTACAGATTTGCGCGAACCAAACCCACGCGCAAGGAGGATTTTTGCCTTTCATA CGCCAAAAGAACTTTTAGAGAAGCTTAATTCCGATTCTTTGCGTGAGAGAATCCGACATATCCCGCCACTAAGCAGCCAA GATTCTAAAAAGCTAAGAGATTGTCAAAAAGAAGCCATAGAGGGCTTAGAAAAATCTTTGAAACAAAACAAACAAAGAGC CTTAATCCAAATGGCAACCGGTGCAGGTAAAACCTTTACCGCTTGTAATTTTGCGTATCGTCTGCTAAGCATAGCAAAAG CAAAGCGCATTTTGTTTCTTGTAGATAGAAACAATCTTGGCAAACAAGCCAAAAAAGAATTTGATAATTTCAGCCCAAGC GCAGATAAGCGGCATTTTAGCGAGATTTATAATGTGGTGCATTTAGAGACAAATCACATTCTCACAGAATCCAAAGTCGT GATTACGACAATTCAGAGGCTGTATTCTATTTTGCGTGGAGAGAGTGAGTTTGATAGCGCAAACGAGGAACACTCCGCCT TTGAAAATGAGGATAAAGAAACAAAAGAAGTTGCCTATAATCCCAAAATTGGCATTGATACCTTTGATTTTATCGTTATT GATGAATGCCACCGCAGCATTTATGGGCTGTGGCGACAGGTGCTAGAGTATTTTGACGCATTTCTTATCGGGCTTAGCGC GACACCCTCTAAGCATACCTTAGGGTTTTTCGCTCAAAATGTTGTGGCGCAATATGACTTAGAAAAATCCATTCTTGACA AAGTCAATGTGGGCTATGAAATCTTTAGGATTAAAACGCGCATTAGCGAGCAAGGAAGCATTATTGAAGCGAATGCAGAA TTTCAGATTCCATTCCGCGACAAAGACACGCGAAAAATCGGCTATGAGAGCTTAGAGGAGGATTTAGAATATTCCAAAGC AGATTTAGACCGCTCCGTGCTTGCTCCTAGCCAAATCCGCACGATTTTAGAGACTTATAAAAACAAAGTCTTTGACCTAC TTTTTCCCGAACGTGAGCGAAGCTATTTGCCTAAAACTTTGATTTTTGCCAAAGACGATAATCACGCAGAGGAAATCGTG CGCCTTGCGCGAGAAGTGTTTAACGCAGACAATGAGTTTGCGCAAAAAATCACCTATAATATCGGCAATCAAAACCCACA CGAGCTTATCAATGCCTTTAGGCATTCCAAAAAGTTTAGAATCGCGGTTACGGTGGATATGATAGCCACAGGCACAGACA TTAAGCCCTTAGAAGTGCTGATTTTTATGCGTGATGTCAAATCGGCGAGTTATTATGCGCAAATGGTTGGGCGCGGGGTG CGGAGTATCCATAATGACGATTTAAGGGCTGTTACGCCAAATGCGGATTGTAAGACGCGTTTTTATGTGATTGACGCGGT GGGCGTGAGTGAAAGCCAAAAGATTGATTCACGCCCCTTAGAACGCAAGAAACGCTTAAGTTTAAAGGAGATTTTGCAAC AGGTGCGCGAGAGTGTGGCAAAAGGTGAATATGACAAAGACGCACTTTTAAGCCTCGCTTCAAGGCTTACACGCTTAGAG TTAAGCTTAAGCAAGGAGGATAATGCGAGTTTGCAAGAACTTAATTCTAACAAAAGCCTTTGCGCACTTGCAAAAGAGAT TTTAGCATTTGCGGATTCCTTACAAGCGTTAGAGAGGGCAGAGGTGGCGCACAATCCACTAGAGATTTTTACAAATGACA CATTTTGCAAGCTGCTTTTAGAGTTGGCAAAAAAGAGCAAAATTTATATTGATGAAATCTCGCAGGATTCTGTGCTTAGT GCAGAATTTGACACGCAAAAGGCGCAGAATCTCATCGCGCAATTTAATGAATTCATTTTGCAGCATAAAGACGAAATCAC CGCTCTAAGCATTATCTACTCACAAAATTACAAAAATCGCCACCTAACTTATGAGGTGATTGCAGAATTAGCGCATAAGC TTAAGCAGGATTCTATGGATATTCCAAGCTTATGGAATGCGTATAAACTGCGTGATAAGGGCAAAGTGAGTAAGAATCCT AGCAAAAACCTAACCAACCTCATCTCCCTTGTGCGCTATGCACTCAAAATGGACACAGAGTTGCAAGATTTTGCGATTGG GGCGAATGCGCGTTATAATCTGTGGCGTGGGCGATGTAAGAAAAAGGGCATTGCATTTAGCCCCGAGCAAGAGGCATTTT TGGAGCTTATCAAAGAATACATTATCGCAAATGGCTGTGCGGAAGTTAAGGATATTCAAGAGATTTGCGCAGACTTAGGC GGGATTTATAGAGCAAAAGCGATTTTTAAGGAAAATTTAGGCGAACTCGTGGAGGAACTAAGCTTGGCATTGGTGGGGTA G
Upstream 100 bases:
>100_bases GTGCTTCTTGAATAGTATTTTACCAAAAAATAGTTACGATTCCTTGCGCATAACTTTCAAGTTTATTGTAAAATATAATA AAGCAATTCAAAGGGGAATC
Downstream 100 bases:
>100_bases GAGGAAAAAATGAGTGATTATACTTTTACAAAATATAGAGACAAGGATAAGGTAGATTTTGAAGTGTTGATTGACGAATG GCTTATGTCAAATGATTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: R.EcoKI [H]
Number of amino acids: Translated: 906; Mature: 906
Protein sequence:
>906_residues MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGTRADYILFVAGKACGVIEAKKISLSLSG AENQAKNYAYTLPAHIPSFQGMLPFVYVSNASEIYFTDLREPNPRARRIFAFHTPKELLEKLNSDSLRERIRHIPPLSSQ DSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAGKTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPS ADKRHFSEIYNVVHLETNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFDFIVI DECHRSIYGLWRQVLEYFDAFLIGLSATPSKHTLGFFAQNVVAQYDLEKSILDKVNVGYEIFRIKTRISEQGSIIEANAE FQIPFRDKDTRKIGYESLEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAEEIV RLAREVFNADNEFAQKITYNIGNQNPHELINAFRHSKKFRIAVTVDMIATGTDIKPLEVLIFMRDVKSASYYAQMVGRGV RSIHNDDLRAVTPNADCKTRFYVIDAVGVSESQKIDSRPLERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLE LSLSKEDNASLQELNSNKSLCALAKEILAFADSLQALERAEVAHNPLEIFTNDTFCKLLLELAKKSKIYIDEISQDSVLS AEFDTQKAQNLIAQFNEFILQHKDEITALSIIYSQNYKNRHLTYEVIAELAHKLKQDSMDIPSLWNAYKLRDKGKVSKNP SKNLTNLISLVRYALKMDTELQDFAIGANARYNLWRGRCKKKGIAFSPEQEAFLELIKEYIIANGCAEVKDIQEICADLG GIYRAKAIFKENLGELVEELSLALVG
Sequences:
>Translated_906_residues MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGTRADYILFVAGKACGVIEAKKISLSLSG AENQAKNYAYTLPAHIPSFQGMLPFVYVSNASEIYFTDLREPNPRARRIFAFHTPKELLEKLNSDSLRERIRHIPPLSSQ DSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAGKTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPS ADKRHFSEIYNVVHLETNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFDFIVI DECHRSIYGLWRQVLEYFDAFLIGLSATPSKHTLGFFAQNVVAQYDLEKSILDKVNVGYEIFRIKTRISEQGSIIEANAE FQIPFRDKDTRKIGYESLEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAEEIV RLAREVFNADNEFAQKITYNIGNQNPHELINAFRHSKKFRIAVTVDMIATGTDIKPLEVLIFMRDVKSASYYAQMVGRGV RSIHNDDLRAVTPNADCKTRFYVIDAVGVSESQKIDSRPLERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLE LSLSKEDNASLQELNSNKSLCALAKEILAFADSLQALERAEVAHNPLEIFTNDTFCKLLLELAKKSKIYIDEISQDSVLS AEFDTQKAQNLIAQFNEFILQHKDEITALSIIYSQNYKNRHLTYEVIAELAHKLKQDSMDIPSLWNAYKLRDKGKVSKNP SKNLTNLISLVRYALKMDTELQDFAIGANARYNLWRGRCKKKGIAFSPEQEAFLELIKEYIIANGCAEVKDIQEICADLG GIYRAKAIFKENLGELVEELSLALVG >Mature_906_residues MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGTRADYILFVAGKACGVIEAKKISLSLSG AENQAKNYAYTLPAHIPSFQGMLPFVYVSNASEIYFTDLREPNPRARRIFAFHTPKELLEKLNSDSLRERIRHIPPLSSQ DSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAGKTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPS ADKRHFSEIYNVVHLETNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFDFIVI DECHRSIYGLWRQVLEYFDAFLIGLSATPSKHTLGFFAQNVVAQYDLEKSILDKVNVGYEIFRIKTRISEQGSIIEANAE FQIPFRDKDTRKIGYESLEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAEEIV RLAREVFNADNEFAQKITYNIGNQNPHELINAFRHSKKFRIAVTVDMIATGTDIKPLEVLIFMRDVKSASYYAQMVGRGV RSIHNDDLRAVTPNADCKTRFYVIDAVGVSESQKIDSRPLERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLE LSLSKEDNASLQELNSNKSLCALAKEILAFADSLQALERAEVAHNPLEIFTNDTFCKLLLELAKKSKIYIDEISQDSVLS AEFDTQKAQNLIAQFNEFILQHKDEITALSIIYSQNYKNRHLTYEVIAELAHKLKQDSMDIPSLWNAYKLRDKGKVSKNP SKNLTNLISLVRYALKMDTELQDFAIGANARYNLWRGRCKKKGIAFSPEQEAFLELIKEYIIANGCAEVKDIQEICADLG GIYRAKAIFKENLGELVEELSLALVG
Specific function: The EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=690, Percent_Identity=25.2173913043478, Blast_Score=183, Evalue=3e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR021943 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR007409 [H]
Pfam domain/function: PF12082 DUF3559; PF00271 Helicase_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 103213; Mature: 103213
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGTRADYILF CCCCHHHHHHHHHHHHHHCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE VAGKACGVIEAKKISLSLSGAENQAKNYAYTLPAHIPSFQGMLPFVYVSNASEIYFTDLR ECCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEECCC EPNPRARRIFAFHTPKELLEKLNSDSLRERIRHIPPLSSQDSKKLRDCQKEAIEGLEKSL CCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH KQNKQRALIQMATGAGKTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHCCCCC ADKRHFSEIYNVVHLETNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKE CHHHHHHHHHHHHEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCH TKEVAYNPKIGIDTFDFIVIDECHRSIYGLWRQVLEYFDAFLIGLSATPSKHTLGFFAQN HHHHCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VVAQYDLEKSILDKVNVGYEIFRIKTRISEQGSIIEANAEFQIPFRDKDTRKIGYESLEE HHHHHHHHHHHHHHHCCCHHEEEEHHHHCCCCCEEECCCEEEECCCCCCHHHHCHHHHHH DLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAEEIV HHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCHHHHHH RLAREVFNADNEFAQKITYNIGNQNPHELINAFRHSKKFRIAVTVDMIATGTDIKPLEVL HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHH IFMRDVKSASYYAQMVGRGVRSIHNDDLRAVTPNADCKTRFYVIDAVGVSESQKIDSRPL HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHH ERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLELSLSKEDNASLQELNSNKSL HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCHH CALAKEILAFADSLQALERAEVAHNPLEIFTNDTFCKLLLELAKKSKIYIDEISQDSVLS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEEE AEFDTQKAQNLIAQFNEFILQHKDEITALSIIYSQNYKNRHLTYEVIAELAHKLKQDSMD CHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC IPSLWNAYKLRDKGKVSKNPSKNLTNLISLVRYALKMDTELQDFAIGANARYNLWRGRCK CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHH KKGIAFSPEQEAFLELIKEYIIANGCAEVKDIQEICADLGGIYRAKAIFKENLGELVEEL CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLALVG HHHHCC >Mature Secondary Structure MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGTRADYILF CCCCHHHHHHHHHHHHHHCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE VAGKACGVIEAKKISLSLSGAENQAKNYAYTLPAHIPSFQGMLPFVYVSNASEIYFTDLR ECCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCEEEEECCC EPNPRARRIFAFHTPKELLEKLNSDSLRERIRHIPPLSSQDSKKLRDCQKEAIEGLEKSL CCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH KQNKQRALIQMATGAGKTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHCCCCC ADKRHFSEIYNVVHLETNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKE CHHHHHHHHHHHHEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCH TKEVAYNPKIGIDTFDFIVIDECHRSIYGLWRQVLEYFDAFLIGLSATPSKHTLGFFAQN HHHHCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH VVAQYDLEKSILDKVNVGYEIFRIKTRISEQGSIIEANAEFQIPFRDKDTRKIGYESLEE HHHHHHHHHHHHHHHCCCHHEEEEHHHHCCCCCEEECCCEEEECCCCCCHHHHCHHHHHH DLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAEEIV HHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCHHHHHH RLAREVFNADNEFAQKITYNIGNQNPHELINAFRHSKKFRIAVTVDMIATGTDIKPLEVL HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHH IFMRDVKSASYYAQMVGRGVRSIHNDDLRAVTPNADCKTRFYVIDAVGVSESQKIDSRPL HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHH ERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLELSLSKEDNASLQELNSNKSL HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCHH CALAKEILAFADSLQALERAEVAHNPLEIFTNDTFCKLLLELAKKSKIYIDEISQDSVLS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEEE AEFDTQKAQNLIAQFNEFILQHKDEITALSIIYSQNYKNRHLTYEVIAELAHKLKQDSMD CHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC IPSLWNAYKLRDKGKVSKNPSKNLTNLISLVRYALKMDTELQDFAIGANARYNLWRGRCK CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHH KKGIAFSPEQEAFLELIKEYIIANGCAEVKDIQEICADLGGIYRAKAIFKENLGELVEEL CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLALVG HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3323532; 7610040; 9278503; 1650347 [H]