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The map label for this gene is yohD [H]

Identifier: 32266870

GI number: 32266870

Start: 1324319

End: 1325080

Strand: Direct

Name: yohD [H]

Synonym: HH1371

Alternate gene names: 32266870

Gene position: 1324319-1325080 (Clockwise)

Preceding gene: 32266869

Following gene: 32266871

Centisome position: 73.61

GC content: 35.7

Gene sequence:

>762_bases
ATGGAATCCATACAAAAGGTAATTGCTTACGTAAAACAGAATCCAAAACGTATTTTTATTTGGGGCTTACTGCTTAGCAT
TATTCTTATACTCTTTATTCTTTATAAACGCTCGGGATTCTCACTTGAAGAATTTATCACGCATTTATGGAATCAATATG
TAGAAGATTGGGGTTATGTGATTTTATTTTTTTGGGGCATTTTAGAGGGAGAGCTTGGACTTATTTTTGCTGGATTGGCT
GCACACGATGGCAAAATGAATCTATTTATGGCTATTTTTATCGCGGGGCTTGGCGGATTTGTGGGAGATCAAATTTATTT
TTATATCGGGCGATTTAATCGCAAGACGATTCAAGAGGAATTCACTTCCCAACGGCGCAAATTTGCCCTTGCACATTTAT
TGTTGAAAAAATATGGCTGGCCTATTATCTTTATTCAACGCTATATGTATGGTATGCGGACAATTATTCCTATGAGTATT
GGCACAACGCGATATAGTGCGCTTAAATTTGCTGTTATTAACCTTTTTTCGGCGTGGGTATGGGCGGCAATCACTATTGT
ATTAACTTGGTTTTTTGGTGAGCATATTTTTATTATCTTAGATTGGTTTAAAGGACACCCTTATTTGCTTATACCTCTTG
CGATTATTATTGGCGGGGGTGTATGGTGGTATTTTCATTCTCAAACAAAAAAAGTGGATAAAAAGATTGCTAAGATTCAA
AGAGAGCTTGAAAACAAAGAAAAAATAAGCAATACACAATAG

Upstream 100 bases:

>100_bases
TTGAGGCTGCATTTGTGATTAATCTCAAAGGTTTAGAGGGTGAAAAAAAGCTCGCTCCTTATACACAAGTCTTTAGCATT
GTAGAATATGAAGGAAAATA

Downstream 100 bases:

>100_bases
TATAAGAGTTGCTTAAAAACTAAAACTAAGGAGCAGTTTATGAAAGTAAGTATTTCTCACAAAAATAATTTTAAGGGTGT
GTCATATCAAGCACAGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MESIQKVIAYVKQNPKRIFIWGLLLSIILILFILYKRSGFSLEEFITHLWNQYVEDWGYVILFFWGILEGELGLIFAGLA
AHDGKMNLFMAIFIAGLGGFVGDQIYFYIGRFNRKTIQEEFTSQRRKFALAHLLLKKYGWPIIFIQRYMYGMRTIIPMSI
GTTRYSALKFAVINLFSAWVWAAITIVLTWFFGEHIFIILDWFKGHPYLLIPLAIIIGGGVWWYFHSQTKKVDKKIAKIQ
RELENKEKISNTQ

Sequences:

>Translated_253_residues
MESIQKVIAYVKQNPKRIFIWGLLLSIILILFILYKRSGFSLEEFITHLWNQYVEDWGYVILFFWGILEGELGLIFAGLA
AHDGKMNLFMAIFIAGLGGFVGDQIYFYIGRFNRKTIQEEFTSQRRKFALAHLLLKKYGWPIIFIQRYMYGMRTIIPMSI
GTTRYSALKFAVINLFSAWVWAAITIVLTWFFGEHIFIILDWFKGHPYLLIPLAIIIGGGVWWYFHSQTKKVDKKIAKIQ
RELENKEKISNTQ
>Mature_253_residues
MESIQKVIAYVKQNPKRIFIWGLLLSIILILFILYKRSGFSLEEFITHLWNQYVEDWGYVILFFWGILEGELGLIFAGLA
AHDGKMNLFMAIFIAGLGGFVGDQIYFYIGRFNRKTIQEEFTSQRRKFALAHLLLKKYGWPIIFIQRYMYGMRTIIPMSI
GTTRYSALKFAVINLFSAWVWAAITIVLTWFFGEHIFIILDWFKGHPYLLIPLAIIIGGGVWWYFHSQTKKVDKKIAKIQ
RELENKEKISNTQ

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=153, Percent_Identity=27.4509803921569, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 29699; Mature: 29699

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESIQKVIAYVKQNPKRIFIWGLLLSIILILFILYKRSGFSLEEFITHLWNQYVEDWGYV
CHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILFFWGILEGELGLIFAGLAAHDGKMNLFMAIFIAGLGGFVGDQIYFYIGRFNRKTIQEE
HHHHHHHHHCCHHHHEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHH
FTSQRRKFALAHLLLKKYGWPIIFIQRYMYGMRTIIPMSIGTTRYSALKFAVINLFSAWV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
WAAITIVLTWFFGEHIFIILDWFKGHPYLLIPLAIIIGGGVWWYFHSQTKKVDKKIAKIQ
HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
RELENKEKISNTQ
HHHHHHHHCCCCC
>Mature Secondary Structure
MESIQKVIAYVKQNPKRIFIWGLLLSIILILFILYKRSGFSLEEFITHLWNQYVEDWGYV
CHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILFFWGILEGELGLIFAGLAAHDGKMNLFMAIFIAGLGGFVGDQIYFYIGRFNRKTIQEE
HHHHHHHHHCCHHHHEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHH
FTSQRRKFALAHLLLKKYGWPIIFIQRYMYGMRTIIPMSIGTTRYSALKFAVINLFSAWV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
WAAITIVLTWFFGEHIFIILDWFKGHPYLLIPLAIIIGGGVWWYFHSQTKKVDKKIAKIQ
HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
RELENKEKISNTQ
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]